Wall clock time and date at job start Tue Mar 31 2020 21:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47196 * 2 1 4 4 O 1.42898 * 109.47295 * 179.97438 * 3 2 1 5 5 C 1.42898 * 113.99627 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46742 * 180.02562 * 5 4 3 7 7 O 1.21288 * 120.00095 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00374 * 180.02562 * 6 5 4 9 9 C 1.47419 * 125.65221 * 179.97438 * 8 6 5 10 10 C 1.54905 * 104.92834 * 155.83963 * 9 8 6 11 11 H 1.09002 * 111.00852 * 155.13877 * 10 9 8 12 12 C 1.53007 * 111.00473 * 278.99353 * 10 9 8 13 13 N 1.46500 * 109.46764 * 293.54383 * 12 10 9 14 14 C 1.36941 * 119.99721 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00032 * 0.02562 * 14 13 12 16 16 C 1.38812 * 119.99691 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00317 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99664 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47480 * 59.99851 * 18 16 14 20 20 H 1.48502 * 109.47313 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47173 * 299.99888 * 18 16 14 22 22 C 1.55448 * 101.45165 * 37.00468 * 10 9 8 23 23 H 1.08998 * 110.85957 * 82.96191 * 22 10 9 24 24 C 1.53001 * 110.70895 * 206.14261 * 22 10 9 25 25 F 1.39902 * 109.47154 * 175.00047 * 24 22 10 26 26 F 1.39892 * 109.47275 * 295.00585 * 24 22 10 27 27 F 1.39903 * 109.47003 * 55.00590 * 24 22 10 28 28 C 1.47026 * 125.64203 * 0.02595 * 8 6 5 29 29 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47431 * 300.00134 * 1 2 3 31 31 H 1.09005 * 109.46839 * 60.00048 * 1 2 3 32 32 H 1.08997 * 109.47431 * 239.99866 * 2 1 3 33 33 H 1.09002 * 109.47312 * 119.99742 * 2 1 3 34 34 H 1.08997 * 109.47040 * 59.99626 * 3 2 1 35 35 H 1.09002 * 109.46780 * 300.00068 * 3 2 1 36 36 H 1.09001 * 109.47497 * 60.00403 * 5 4 3 37 37 H 1.08995 * 109.47511 * 299.99510 * 5 4 3 38 38 H 1.09002 * 110.36926 * 274.73432 * 9 8 6 39 39 H 1.08995 * 110.36556 * 36.94716 * 9 8 6 40 40 H 1.08998 * 109.47202 * 53.54667 * 12 10 9 41 41 H 1.09001 * 109.47002 * 173.54406 * 12 10 9 42 42 H 0.97000 * 120.00236 * 359.97438 * 13 12 10 43 43 H 0.97002 * 120.00350 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.88266 * 300.45023 * 28 8 6 45 45 H 1.09000 * 109.88221 * 61.61840 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0501 2.7481 0.0001 6 6 5.5524 2.6291 0.0001 7 8 6.0741 1.5341 0.0011 8 7 6.3165 3.7394 0.0002 9 6 7.7904 3.7683 0.0008 10 6 8.1629 5.1413 -0.6119 11 1 9.1494 5.4634 -0.2785 12 6 8.0899 5.0981 -2.1397 13 7 9.1300 4.2031 -2.6530 14 6 9.2580 4.0051 -4.0020 15 1 8.5926 4.5089 -4.6873 16 6 10.2432 3.1567 -4.4884 17 7 11.0538 2.5423 -3.6531 18 14 10.4183 2.8870 -6.3285 19 1 10.7010 4.1839 -6.9942 20 1 11.5359 1.9437 -6.5864 21 1 9.1569 2.3184 -6.8678 22 6 7.0485 6.0532 -0.0263 23 1 7.3053 6.3819 0.9807 24 6 6.7983 7.2557 -0.9386 25 9 5.7168 7.9957 -0.4487 26 9 7.9402 8.0632 -0.9696 27 9 6.5089 6.8075 -2.2320 28 6 5.8178 5.1225 0.0008 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.7282 3.2895 0.8896 37 1 3.7290 3.2884 -0.8904 38 1 8.1709 3.6916 1.0194 39 1 8.1858 2.9591 -0.6130 40 1 7.1106 4.7308 -2.4464 41 1 8.2434 6.1005 -2.5392 42 1 9.7279 3.7509 -2.0375 43 1 11.7425 1.9497 -3.9930 44 1 5.2031 5.2953 -0.8826 45 1 5.2340 5.3057 0.9028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717906189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:51 Heat of formation + Delta-G solvation = -235.405950 kcal Electronic energy + Delta-G solvation = -30925.095992 eV Core-core repulsion = 26141.547409 eV Total energy + Delta-G solvation = -4783.548583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.15978 -48.64819 -48.54000 -41.37514 -39.51687 -38.44503 -36.39756 -34.60310 -34.06781 -32.76119 -30.94147 -29.33828 -27.29072 -26.87886 -26.19853 -24.92010 -23.28430 -22.47344 -21.57513 -20.67958 -19.52410 -19.40165 -19.12348 -18.54608 -18.04866 -17.59379 -17.38855 -17.12303 -16.67360 -16.31414 -15.83676 -15.69760 -15.56500 -15.27444 -15.15611 -14.98367 -14.85494 -14.83388 -14.67223 -14.45738 -14.34560 -14.00594 -13.80327 -13.45507 -13.15418 -13.09464 -13.03449 -12.99579 -12.88572 -12.77812 -12.46190 -12.27793 -12.22161 -11.83293 -11.79797 -11.74323 -11.68470 -10.98631 -10.93062 -10.68531 -9.79141 -9.01638 -7.97544 -5.25947 1.43386 1.45321 1.47078 1.51407 1.52925 1.82752 2.49547 2.63200 2.73905 2.90527 2.98737 3.34539 3.39675 3.58483 3.64844 3.79209 3.96317 4.03121 4.07113 4.08296 4.17963 4.24491 4.24840 4.41937 4.45471 4.49414 4.56183 4.65104 4.69275 4.74131 4.84441 4.86435 4.97522 5.04357 5.16550 5.22316 5.23295 5.35849 5.45459 6.08516 6.24597 6.37543 7.05689 7.31092 8.05972 8.28555 9.25665 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.007855 B = 0.003838 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3563.582078 B = 7294.033139 C = 9706.558433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.055 3.945 4 O -0.405 6.405 5 C 0.056 3.944 6 C 0.519 3.481 7 O -0.576 6.576 8 N -0.610 5.610 9 C 0.117 3.883 10 C -0.097 4.097 11 H 0.117 0.883 12 C 0.154 3.846 13 N -0.742 5.742 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.073 4.073 17 N -0.967 5.967 18 Si 0.971 3.029 19 H -0.274 1.274 20 H -0.293 1.293 21 H -0.282 1.282 22 C -0.129 4.129 23 H 0.176 0.824 24 C 0.462 3.538 25 F -0.175 7.175 26 F -0.185 7.185 27 F -0.186 7.186 28 C 0.102 3.898 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.018 0.982 41 H 0.033 0.967 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.083 0.917 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.876 9.446 14.289 27.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.020 4.020 4 O -0.324 6.324 5 C -0.023 4.023 6 C 0.309 3.691 7 O -0.455 6.455 8 N -0.345 5.345 9 C -0.006 4.006 10 C -0.116 4.116 11 H 0.135 0.865 12 C 0.028 3.972 13 N -0.386 5.386 14 C -0.377 4.377 15 H 0.089 0.911 16 C -0.266 4.266 17 N -0.617 5.617 18 Si 0.800 3.200 19 H -0.200 1.200 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.149 4.149 23 H 0.194 0.806 24 C 0.408 3.592 25 F -0.157 7.157 26 F -0.166 7.166 27 F -0.168 7.168 28 C -0.020 4.020 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.051 0.949 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.628 8.679 14.086 26.443 hybrid contribution 0.806 -0.288 -1.348 1.597 sum -19.821 8.392 12.738 25.011 Atomic orbital electron populations 1.21658 0.92618 1.02872 1.02839 1.21504 0.97299 0.95358 1.02434 1.22854 0.78563 0.98698 1.01924 1.87983 1.21858 1.26762 1.95794 1.22282 0.87982 0.86746 1.05319 1.20735 0.90140 0.82557 0.75667 1.90747 1.75785 1.28071 1.50875 1.48310 1.06962 1.06061 1.73196 1.22214 0.79945 0.97067 1.01331 1.22629 0.99816 0.93971 0.95227 0.86471 1.21265 0.91144 0.93365 0.91423 1.42534 1.37872 1.54132 1.04020 1.19502 1.12083 1.21232 0.84913 0.91134 1.25545 0.98761 1.00279 1.02012 1.69794 1.22549 1.34627 1.34775 0.85253 0.76906 0.77588 0.80286 1.20011 1.21935 1.20830 1.23687 0.97709 0.91548 1.01962 0.80622 1.20386 0.73993 0.84840 0.79976 1.93201 1.55870 1.79196 1.87395 1.93197 1.51209 1.75686 1.96522 1.93210 1.93310 1.88741 1.41496 1.22292 0.94990 0.78812 1.05870 0.91632 0.91298 0.91887 0.92728 0.91920 0.90745 0.91881 0.86008 0.88201 0.88499 0.93299 0.96445 0.94894 0.79408 0.93976 0.89858 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.91 71.98 0.71 -0.87 16 2 C -0.13 -2.20 6.30 30.60 0.19 -2.01 16 3 C 0.06 0.94 5.94 71.98 0.43 1.37 16 4 O -0.40 -10.76 9.88 -129.94 -1.28 -12.05 16 5 C 0.06 1.16 5.61 71.24 0.40 1.56 16 6 C 0.52 16.20 7.93 87.66 0.69 16.89 16 7 O -0.58 -25.35 16.75 15.98 0.27 -25.08 16 8 N -0.61 -15.84 3.31 -811.80 -2.69 -18.53 16 9 C 0.12 3.52 6.26 86.85 0.54 4.06 16 10 C -0.10 -2.66 2.91 -9.30 -0.03 -2.69 16 11 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 12 C 0.15 6.01 4.07 86.38 0.35 6.36 16 13 N -0.74 -38.41 5.20 -343.44 -1.79 -40.20 16 14 C -0.25 -14.24 9.99 84.03 0.84 -13.40 16 15 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 16 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 17 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 18 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 19 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 21 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 22 C -0.13 -2.20 2.91 -9.50 -0.03 -2.22 16 23 H 0.18 1.52 8.14 -2.39 -0.02 1.50 16 24 C 0.46 9.54 2.33 71.98 0.17 9.71 16 25 F -0.18 -3.00 17.12 44.97 0.77 -2.23 16 26 F -0.18 -4.41 16.95 44.97 0.76 -3.65 16 27 F -0.19 -5.06 12.37 44.97 0.56 -4.50 16 28 C 0.10 1.61 5.50 86.73 0.48 2.09 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.05 2.04 7.21 -2.39 -0.02 2.02 16 40 H 0.02 0.73 7.22 -2.39 -0.02 0.71 16 41 H 0.03 1.32 5.90 -2.39 -0.01 1.31 16 42 H 0.37 20.43 7.21 -92.71 -0.67 19.76 16 43 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.08 1.31 7.31 -2.39 -0.02 1.30 16 45 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -83.12 377.51 4.47 -78.65 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.34 Total: 21.43 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 5.22 Total: 16.93 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -4.19 Total: -119.50 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -1.02 Total: -37.13 kcal Atomic # 9 Polarization: -12.46 SS G_CDS: 2.09 Total: -10.38 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -83.12 4.47 -78.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717906189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.755 kcal (2) G-P(sol) polarization free energy of solvation -83.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds