Wall clock time and date at job start Tue Mar 31 2020 21:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47012 * 2 1 4 4 O 1.42895 * 109.47201 * 180.02562 * 3 2 1 5 5 C 1.42901 * 114.00155 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47427 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99659 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00205 * 179.97438 * 6 5 4 9 9 C 1.48149 * 127.83973 * 359.97265 * 8 6 5 10 10 C 1.54393 * 104.61751 * 140.41447 * 9 8 6 11 11 H 1.08997 * 110.42690 * 264.95396 * 10 9 8 12 12 C 1.53000 * 110.34131 * 142.74091 * 10 9 8 13 13 F 1.39902 * 109.46843 * 304.46279 * 12 10 9 14 14 F 1.39892 * 109.47216 * 64.46088 * 12 10 9 15 15 F 1.39893 * 109.46895 * 184.46421 * 12 10 9 16 16 C 1.54283 * 104.95913 * 23.86667 * 10 9 8 17 17 H 1.09006 * 110.34073 * 118.97441 * 16 10 9 18 18 C 1.52997 * 110.34549 * 241.12858 * 16 10 9 19 19 N 1.46505 * 109.47212 * 185.00108 * 18 16 10 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 16 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46725 * 59.99976 * 24 22 20 26 26 H 1.48498 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46920 * 300.00189 * 24 22 20 28 28 C 1.48147 * 127.83848 * 179.97438 * 8 6 5 29 29 H 1.08994 * 109.47231 * 59.99849 * 1 2 3 30 30 H 1.09005 * 109.46774 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47452 * 299.99585 * 1 2 3 32 32 H 1.08998 * 109.47074 * 240.00040 * 2 1 3 33 33 H 1.08994 * 109.47231 * 120.00151 * 2 1 3 34 34 H 1.09008 * 109.47258 * 60.00118 * 3 2 1 35 35 H 1.09003 * 109.47224 * 300.00355 * 3 2 1 36 36 H 1.08998 * 109.47213 * 59.99978 * 5 4 3 37 37 H 1.09005 * 109.46924 * 299.99329 * 5 4 3 38 38 H 1.09000 * 110.40472 * 21.62932 * 9 8 6 39 39 H 1.08994 * 110.50897 * 259.25068 * 9 8 6 40 40 H 1.09002 * 109.47153 * 65.00100 * 18 16 10 41 41 H 1.09001 * 109.46832 * 305.00291 * 18 16 10 42 42 H 0.96996 * 119.99606 * 0.02562 * 19 18 16 43 43 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 44 44 H 1.09000 * 110.41275 * 100.79899 * 28 8 6 45 45 H 1.09006 * 110.40750 * 338.36450 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0501 2.7480 -0.0001 6 6 5.5525 2.6291 -0.0014 7 8 6.0740 1.5342 -0.0022 8 7 6.3163 3.7394 -0.0017 9 6 5.8676 5.1513 -0.0014 10 6 6.8473 5.8713 0.9502 11 1 6.4281 5.9298 1.9546 12 6 7.1655 7.2727 0.4251 13 9 7.6553 7.1807 -0.8822 14 9 6.0019 8.0492 0.4335 15 9 8.1303 7.8694 1.2437 16 6 8.1183 4.9968 0.9495 17 1 8.9698 5.5662 0.5768 18 6 8.4050 4.4739 2.3585 19 7 9.6770 3.7470 2.3602 20 6 10.1433 3.1859 3.5190 21 1 9.5732 3.2789 4.4317 22 6 11.3487 2.4976 3.5208 23 7 12.0437 2.3847 2.4088 24 14 11.9845 1.7316 5.1015 25 1 11.0019 0.7355 5.5989 26 1 13.2815 1.0579 4.8382 27 1 12.1753 2.7919 6.1235 28 6 7.7953 3.8249 -0.0024 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.7289 3.2884 0.8903 37 1 3.7282 3.2894 -0.8897 38 1 4.8476 5.2257 0.3756 39 1 5.9329 5.5729 -1.0044 40 1 7.6029 3.8035 2.6675 41 1 8.4649 5.3127 3.0520 42 1 10.1891 3.6638 1.5407 43 1 12.8862 1.9040 2.4100 44 1 8.1633 4.0381 -1.0061 45 1 8.2298 2.8988 0.3740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717906190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:55 Heat of formation + Delta-G solvation = -222.391721 kcal Electronic energy + Delta-G solvation = -30446.611654 eV Core-core repulsion = 25663.627411 eV Total energy + Delta-G solvation = -4782.984244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.21103 -47.71081 -47.63634 -40.22385 -38.54171 -37.39088 -34.69434 -33.94912 -32.61834 -31.19646 -29.63241 -28.31290 -26.22180 -25.86824 -24.98943 -23.43164 -21.89926 -21.78616 -20.37637 -19.64931 -18.57895 -18.22749 -17.87350 -17.36995 -17.07153 -16.74171 -16.41880 -15.73490 -15.45110 -14.75794 -14.70719 -14.65098 -14.47341 -14.26551 -14.09355 -13.92065 -13.84615 -13.76710 -13.65556 -13.38360 -13.32214 -12.92144 -12.54902 -12.44202 -12.34373 -12.24874 -11.93370 -11.82832 -11.66956 -11.22810 -11.18188 -11.11126 -10.90024 -10.74691 -10.58934 -10.08746 -9.95419 -9.77760 -9.70738 -8.90421 -8.80364 -6.95504 -5.76105 -3.06023 2.38247 2.57766 2.69273 3.46325 3.49646 3.50498 3.51479 3.68478 3.73534 3.85069 4.31109 4.46378 4.55099 4.63450 4.66081 4.72598 4.80627 4.83044 4.94037 4.99695 5.03389 5.12030 5.14171 5.15748 5.18541 5.39869 5.54287 5.58375 5.64886 5.67493 5.82123 5.90420 5.92996 5.99765 6.18211 6.28367 6.56294 6.67277 6.82836 7.42597 7.69479 8.14632 8.41514 9.53195 10.06902 10.41593 11.46489 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.007304 B = 0.003671 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3832.688967 B = 7625.818432 C =10735.784548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.363 6.363 5 C 0.051 3.949 6 C 0.535 3.465 7 O -0.503 6.503 8 N -0.620 5.620 9 C 0.109 3.891 10 C -0.149 4.149 11 H 0.130 0.870 12 C 0.461 3.539 13 F -0.180 7.180 14 F -0.186 7.186 15 F -0.174 7.174 16 C -0.101 4.101 17 H 0.099 0.901 18 C 0.164 3.836 19 N -0.729 5.729 20 C -0.243 4.243 21 H 0.070 0.930 22 C -0.010 4.010 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.112 3.888 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.075 0.925 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.285 8.079 -8.189 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.281 6.281 5 C -0.029 4.029 6 C 0.322 3.678 7 O -0.375 6.375 8 N -0.357 5.357 9 C -0.015 4.015 10 C -0.170 4.170 11 H 0.148 0.852 12 C 0.407 3.593 13 F -0.161 7.161 14 F -0.167 7.167 15 F -0.155 7.155 16 C -0.121 4.121 17 H 0.118 0.882 18 C 0.037 3.963 19 N -0.374 5.374 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 C -0.009 4.009 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -21.937 7.126 -8.039 24.426 hybrid contribution 0.469 0.306 0.558 0.791 sum -21.468 7.432 -7.481 23.918 Atomic orbital electron populations 1.21694 0.94703 1.02315 1.01914 1.21454 0.95527 0.95416 1.03847 1.22635 0.80484 0.98354 1.00173 1.88027 1.19536 1.25138 1.95399 1.22145 0.91445 0.86954 1.02394 1.19762 0.88021 0.83065 0.76909 1.90803 1.74199 1.25294 1.47252 1.48794 1.08039 1.04481 1.74350 1.22300 0.97843 0.82039 0.99358 1.23512 1.00536 0.89835 1.03159 0.85221 1.20327 0.74407 0.88762 0.75820 1.93184 1.88181 1.96429 1.38336 1.93176 1.49202 1.77985 1.96356 1.93235 1.64293 1.85619 1.72377 1.22414 0.94748 0.95315 0.99614 0.88238 1.20663 0.90333 0.94699 0.90639 1.42278 1.20388 1.64195 1.10536 1.19115 1.02567 1.27124 0.88539 0.91245 1.24735 0.97632 1.01133 0.97160 1.69638 1.15792 1.46924 1.25610 0.86253 0.78013 0.79069 0.82757 1.21202 1.21643 1.21260 1.22525 0.78575 1.00808 0.99019 0.92583 0.91951 0.92527 0.90923 0.90817 0.93126 0.93226 0.90253 0.90385 0.89036 0.89627 0.95846 0.95718 0.78137 0.93371 0.90680 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.52 16 2 C -0.12 -1.04 6.30 -26.73 -0.17 -1.21 16 3 C 0.06 0.52 5.94 37.16 0.22 0.75 16 4 O -0.36 -4.70 9.88 -55.14 -0.54 -5.24 16 5 C 0.05 0.54 5.40 36.01 0.19 0.73 16 6 C 0.54 8.06 7.99 -10.99 -0.09 7.97 16 7 O -0.50 -10.35 16.77 -14.35 -0.24 -10.59 16 8 N -0.62 -8.14 3.32 -169.30 -0.56 -8.70 16 9 C 0.11 0.99 6.25 -2.40 -0.02 0.97 16 10 C -0.15 -1.60 2.73 -89.22 -0.24 -1.84 16 11 H 0.13 1.24 7.71 -51.93 -0.40 0.84 16 12 C 0.46 5.03 2.53 37.16 0.09 5.12 16 13 F -0.18 -2.05 16.05 2.25 0.04 -2.01 16 14 F -0.19 -1.85 17.17 2.25 0.04 -1.82 16 15 F -0.17 -2.26 16.92 2.25 0.04 -2.22 16 16 C -0.10 -1.48 2.39 -89.22 -0.21 -1.69 16 17 H 0.10 1.50 7.40 -51.93 -0.38 1.12 16 18 C 0.16 3.14 5.37 -4.04 -0.02 3.12 16 19 N -0.73 -18.15 5.21 -59.91 -0.31 -18.46 16 20 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 21 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 24 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.11 1.71 6.47 -2.41 -0.02 1.70 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.65 7.95 -51.93 -0.41 0.23 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.56 7.30 -51.93 -0.38 0.18 16 39 H 0.09 0.68 7.21 -51.93 -0.37 0.30 16 40 H 0.02 0.47 8.13 -51.93 -0.42 0.05 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.38 10.01 7.61 -40.82 -0.31 9.70 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.11 2.12 7.31 -51.93 -0.38 1.74 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -34.86 384.19 -7.03 -41.88 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.84 Total: 3.52 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.13 Total: 7.74 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.15 Total: -54.77 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.79 Total: -15.83 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.11 Total: -6.05 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.86 -7.03 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717906190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.508 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds