Wall clock time and date at job start Tue Mar 31 2020 21:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 O 1.42895 * 109.47503 * 180.02562 * 3 2 1 5 5 C 1.42902 * 114.00370 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47205 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00147 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00198 * 180.02562 * 6 5 4 9 9 C 1.47485 * 127.03657 * 180.02562 * 8 6 5 10 10 C 1.54010 * 107.08396 * 154.51376 * 9 8 6 11 11 H 1.09000 * 110.32457 * 242.41251 * 10 9 8 12 12 C 1.52999 * 110.32715 * 120.30220 * 10 9 8 13 13 N 1.46498 * 109.47352 * 66.44833 * 12 10 9 14 14 C 1.36933 * 120.00315 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99594 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00116 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99875 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99747 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46845 * 60.00059 * 18 16 14 20 20 H 1.48500 * 109.46638 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46961 * 299.99850 * 18 16 14 22 22 C 1.54615 * 105.04390 * 1.30760 * 10 9 8 23 23 H 1.09000 * 110.74055 * 263.51245 * 22 10 9 24 24 C 1.52997 * 110.74003 * 140.36957 * 22 10 9 25 25 F 1.39895 * 109.47407 * 59.99806 * 24 22 10 26 26 F 1.39898 * 109.47054 * 179.97438 * 24 22 10 27 27 F 1.39898 * 109.46947 * 299.99667 * 24 22 10 28 28 C 1.48124 * 127.03000 * 359.68169 * 8 6 5 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.08999 * 109.46857 * 300.00103 * 5 4 3 37 37 H 1.09001 * 109.46918 * 59.99989 * 5 4 3 38 38 H 1.09000 * 109.91498 * 273.87341 * 9 8 6 39 39 H 1.09000 * 109.91421 * 35.15482 * 9 8 6 40 40 H 1.08997 * 109.47411 * 186.45306 * 12 10 9 41 41 H 1.09004 * 109.46812 * 306.45640 * 12 10 9 42 42 H 0.97005 * 119.99971 * 0.02562 * 13 12 10 43 43 H 0.97001 * 119.99282 * 180.02562 * 17 16 14 44 44 H 1.08995 * 110.66137 * 337.76855 * 28 8 6 45 45 H 1.09000 * 110.66415 * 100.89331 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0501 2.7481 -0.0012 6 6 5.5524 2.6291 -0.0012 7 8 6.0741 1.5342 -0.0002 8 7 6.3163 3.7394 -0.0012 9 6 7.7898 3.8040 -0.0017 10 6 8.1834 5.1515 -0.6350 11 1 8.7545 4.9879 -1.5489 12 6 8.9961 5.9873 0.3560 13 7 10.2821 5.3323 0.6077 14 6 11.1834 5.9010 1.4676 15 1 10.9459 6.8322 1.9605 16 6 12.4022 5.2807 1.7057 17 7 12.6917 4.1461 1.1046 18 14 13.6313 6.0562 2.8794 19 1 13.0205 6.1764 4.2275 20 1 14.8448 5.2040 2.9593 21 1 14.0060 7.4049 2.3836 22 6 6.8425 5.8504 -0.9574 23 1 6.5614 5.6853 -1.9975 24 6 6.9243 7.3472 -0.6515 25 9 7.9338 7.9272 -1.4272 26 9 5.6995 7.9524 -0.9528 27 9 7.2146 7.5308 0.7046 28 6 5.8478 5.1446 -0.0078 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.7281 3.2887 -0.8912 37 1 3.7289 3.2892 0.8887 38 1 8.1641 3.7508 1.0206 39 1 8.1971 2.9832 -0.5921 40 1 9.1690 6.9792 -0.0614 41 1 8.4452 6.0779 1.2922 42 1 10.4955 4.4961 0.1647 43 1 13.5432 3.7125 1.2714 44 1 4.8324 5.2096 -0.3986 45 1 5.9044 5.5737 0.9926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717906192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:56 Heat of formation + Delta-G solvation = -234.357443 kcal Electronic energy + Delta-G solvation = -30556.165080 eV Core-core repulsion = 25772.661964 eV Total energy + Delta-G solvation = -4783.503116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.17937 -48.61187 -48.55928 -41.35865 -39.53784 -38.46810 -36.45413 -34.58791 -34.13953 -32.70216 -30.95785 -29.39291 -27.16800 -26.87672 -26.16374 -24.88930 -23.52987 -22.46235 -21.49257 -20.73469 -19.54318 -19.30534 -19.12026 -18.49225 -18.13558 -17.48283 -17.41672 -17.00679 -16.57222 -16.32931 -16.14840 -15.51240 -15.48790 -15.33814 -15.18017 -15.12036 -14.96880 -14.87238 -14.69745 -14.45075 -14.36357 -14.05547 -13.60867 -13.44041 -13.20543 -13.03069 -13.02551 -12.92681 -12.86711 -12.74776 -12.47755 -12.30656 -12.17365 -11.81577 -11.77687 -11.74329 -11.65386 -11.01338 -10.91365 -10.66683 -9.96292 -9.00907 -7.95554 -5.24586 1.40252 1.43630 1.46661 1.49650 1.55725 1.80953 2.52397 2.65085 2.73014 2.89967 3.01664 3.36285 3.41147 3.57728 3.64111 3.68169 3.98033 4.05714 4.08339 4.10876 4.19689 4.25241 4.27493 4.36753 4.40793 4.44438 4.58283 4.66793 4.67679 4.70673 4.83352 4.86326 4.92178 5.04074 5.18428 5.18646 5.25200 5.37538 5.48912 6.10000 6.25919 6.36020 6.99954 7.32781 8.06440 8.29473 9.27479 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.002883 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.531644 B = 9709.432188 C =11517.161340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.056 3.944 4 O -0.404 6.404 5 C 0.055 3.945 6 C 0.526 3.474 7 O -0.575 6.575 8 N -0.613 5.613 9 C 0.123 3.877 10 C -0.093 4.093 11 H 0.101 0.899 12 C 0.143 3.857 13 N -0.743 5.743 14 C -0.243 4.243 15 H 0.075 0.925 16 C -0.075 4.075 17 N -0.968 5.968 18 Si 0.972 3.028 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.277 1.277 22 C -0.136 4.136 23 H 0.161 0.839 24 C 0.466 3.534 25 F -0.186 7.186 26 F -0.174 7.174 27 F -0.183 7.183 28 C 0.105 3.895 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.038 0.962 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.143 0.857 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.029 3.034 -5.993 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.020 4.020 4 O -0.324 6.324 5 C -0.024 4.024 6 C 0.316 3.684 7 O -0.453 6.453 8 N -0.348 5.348 9 C 0.000 4.000 10 C -0.112 4.112 11 H 0.119 0.881 12 C 0.017 3.983 13 N -0.386 5.386 14 C -0.375 4.375 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.801 3.199 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.203 1.203 22 C -0.156 4.156 23 H 0.179 0.821 24 C 0.412 3.588 25 F -0.167 7.167 26 F -0.156 7.156 27 F -0.164 7.164 28 C -0.017 4.017 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.161 0.839 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.674 2.342 -5.853 28.383 hybrid contribution 1.553 0.255 0.584 1.678 sum -26.122 2.597 -5.268 26.774 Atomic orbital electron populations 1.21662 0.92791 1.02816 1.02824 1.21500 0.97164 0.95466 1.02468 1.22846 0.78505 0.98605 1.02023 1.87976 1.21837 1.26716 1.95828 1.22301 0.87457 0.86874 1.05767 1.20795 0.90143 0.82149 0.75297 1.90746 1.75792 1.27912 1.50856 1.48678 1.06637 1.06286 1.73213 1.21870 0.80146 0.97064 1.00948 1.22175 0.94821 0.94023 1.00221 0.88109 1.21531 0.86103 0.94492 0.96201 1.42522 1.15447 1.27024 1.53591 1.19530 0.95995 1.04297 1.17671 0.90731 1.25564 1.00201 0.98161 1.02806 1.69808 1.24145 1.19579 1.48343 0.85232 0.78230 0.77438 0.79000 1.20421 1.22248 1.20293 1.23580 0.98029 0.87659 1.06345 0.82121 1.20241 0.73464 0.90974 0.74142 1.93183 1.61479 1.86798 1.75277 1.93198 1.43606 1.85834 1.92916 1.93200 1.93099 1.96216 1.33900 1.22746 0.99390 0.79207 1.00323 0.91526 0.91742 0.91720 0.92409 0.92157 0.91047 0.91432 0.86276 0.87098 0.92472 0.91689 0.95068 0.94395 0.79417 0.94024 0.83897 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.91 71.98 0.71 -0.53 16 2 C -0.13 -1.80 6.30 30.59 0.19 -1.61 16 3 C 0.06 0.75 5.94 71.98 0.43 1.17 16 4 O -0.40 -9.02 9.88 -129.94 -1.28 -10.31 16 5 C 0.05 0.90 5.35 71.24 0.38 1.28 16 6 C 0.53 14.25 7.97 87.66 0.70 14.95 16 7 O -0.57 -22.63 16.84 15.99 0.27 -22.36 16 8 N -0.61 -14.73 3.29 -810.12 -2.67 -17.40 16 9 C 0.12 3.86 6.30 86.53 0.55 4.41 16 10 C -0.09 -2.63 2.85 -9.90 -0.03 -2.66 16 11 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 12 C 0.14 5.39 3.86 86.38 0.33 5.72 16 13 N -0.74 -37.26 5.37 -343.45 -1.84 -39.10 16 14 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 15 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 16 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 17 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 18 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 C -0.14 -2.46 3.03 -9.71 -0.03 -2.49 16 23 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 24 C 0.47 9.83 2.40 71.98 0.17 10.00 16 25 F -0.19 -4.82 15.48 44.97 0.70 -4.12 16 26 F -0.17 -3.00 17.23 44.97 0.77 -2.23 16 27 F -0.18 -4.68 12.77 44.97 0.57 -4.11 16 28 C 0.11 1.60 6.26 86.60 0.54 2.14 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.12 0.99 7.90 -2.39 -0.02 0.98 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 2.17 7.61 -2.39 -0.02 2.15 16 39 H 0.06 2.28 8.05 -2.39 -0.02 2.26 16 40 H 0.03 1.21 5.40 -2.39 -0.01 1.20 16 41 H 0.04 1.45 6.68 -2.38 -0.02 1.43 16 42 H 0.37 20.00 7.51 -92.70 -0.70 19.31 16 43 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.14 0.79 7.23 -2.39 -0.02 0.78 16 45 H 0.09 1.47 7.32 -2.39 -0.02 1.46 16 Total: -1.00 -78.80 375.71 4.40 -74.39 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.32 Total: 20.47 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 5.26 Total: 15.71 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -4.23 Total: -116.20 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.01 Total: -32.66 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 2.04 Total: -10.46 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -78.80 4.40 -74.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717906192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.963 kcal (2) G-P(sol) polarization free energy of solvation -78.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds