Wall clock time and date at job start Tue Mar 31 2020 21:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39898 * 109.47190 * 2 1 4 4 F 1.39903 * 109.47205 * 240.00569 * 2 1 3 5 5 C 1.50704 * 109.47339 * 120.00449 * 2 1 3 6 6 C 1.38353 * 119.85275 * 89.99833 * 5 2 1 7 7 C 1.37960 * 120.14124 * 180.02562 * 6 5 2 8 8 C 1.39571 * 119.85468 * 0.02562 * 7 6 5 9 9 C 1.47845 * 120.14477 * 179.97438 * 8 7 6 10 10 O 1.21552 * 120.00326 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00087 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99985 * 179.97438 * 11 9 8 13 13 H 1.09002 * 112.85221 * 334.67013 * 12 11 9 14 14 C 1.53785 * 113.68813 * 105.94035 * 12 11 9 15 15 C 1.53777 * 87.08241 * 89.12417 * 14 12 11 16 16 H 1.08998 * 113.69520 * 270.87557 * 15 14 12 17 17 C 1.52999 * 113.61195 * 139.97738 * 15 14 12 18 18 N 1.46498 * 109.46770 * 87.50624 * 17 15 14 19 19 C 1.36940 * 120.00197 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99670 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00433 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99447 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99894 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47188 * 90.00352 * 23 21 19 25 25 H 1.48505 * 109.46935 * 210.00449 * 23 21 19 26 26 H 1.48504 * 109.47164 * 329.99891 * 23 21 19 27 27 C 1.53781 * 113.61339 * 203.47543 * 12 11 9 28 28 C 1.39578 * 119.71346 * 0.24884 * 8 7 6 29 29 C 1.37961 * 119.84778 * 359.47323 * 28 8 7 30 30 H 1.09002 * 109.47221 * 299.99442 * 1 2 3 31 31 H 1.08998 * 109.47128 * 59.99756 * 1 2 3 32 32 H 1.08999 * 109.46973 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.93063 * 0.02681 * 6 5 2 34 34 H 1.08002 * 120.07114 * 180.02562 * 7 6 5 35 35 H 0.96998 * 119.99866 * 0.02562 * 11 9 8 36 36 H 1.08999 * 113.61060 * 203.67840 * 14 12 11 37 37 H 1.08997 * 113.61198 * 334.57634 * 14 12 11 38 38 H 1.09005 * 109.47016 * 207.50089 * 17 15 14 39 39 H 1.08994 * 109.47189 * 327.50593 * 17 15 14 40 40 H 0.96999 * 120.00322 * 359.97438 * 18 17 15 41 41 H 0.97000 * 119.99203 * 179.97438 * 22 21 19 42 42 H 1.09000 * 113.61578 * 25.34726 * 27 12 11 43 43 H 1.08997 * 113.61673 * 156.25695 * 27 12 11 44 44 H 1.07997 * 120.07947 * 179.72439 * 28 8 7 45 45 H 1.08004 * 119.92947 * 180.26884 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0324 -0.7105 1.2304 6 6 2.2619 -2.0743 1.1926 7 6 2.7213 -2.7309 2.3157 8 6 2.9540 -2.0163 3.4918 9 6 3.4458 -2.7134 4.6992 10 8 3.6480 -3.9117 4.6693 11 7 3.6700 -2.0204 5.8333 12 6 4.1568 -2.7114 7.0299 13 1 3.8919 -3.7686 7.0454 14 6 5.6393 -2.4431 7.3381 15 6 5.1679 -1.2341 8.1632 16 1 5.0830 -0.3147 7.5839 17 6 5.9418 -1.0442 9.4693 18 7 7.1326 -0.2290 9.2171 19 6 7.9844 0.0753 10.2452 20 1 7.7785 -0.2861 11.2420 21 6 9.1130 0.8473 10.0062 22 7 9.3642 1.2871 8.7914 23 14 10.2753 1.2617 11.4087 24 1 11.3200 0.2116 11.5125 25 1 10.9176 2.5749 11.1476 26 1 9.5120 1.3283 12.6808 27 6 3.8323 -1.9758 8.3408 28 6 2.7149 -0.6415 3.5248 29 6 2.2610 0.0039 2.3931 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.0811 -2.6262 0.2821 34 1 2.9005 -3.7955 2.2848 35 1 3.5083 -1.0643 5.8573 36 1 6.1090 -3.2238 7.9364 37 1 6.2254 -2.1709 6.4603 38 1 5.3059 -0.5425 10.1987 39 1 6.2430 -2.0170 9.8578 40 1 7.3178 0.0952 8.3218 41 1 10.1527 1.8269 8.6245 42 1 2.9597 -1.3261 8.2725 43 1 3.8081 -2.6285 9.2133 44 1 2.8887 -0.0835 4.4330 45 1 2.0797 1.0683 2.4159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725373744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:40 Heat of formation + Delta-G solvation = -101.169030 kcal Electronic energy + Delta-G solvation = -27977.674628 eV Core-core repulsion = 23630.716219 eV Total energy + Delta-G solvation = -4346.958409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.08330 -48.10590 -41.62495 -40.28399 -39.08507 -36.35809 -34.80102 -33.93099 -32.81120 -32.05232 -30.79277 -28.52054 -26.63744 -26.18233 -25.11233 -23.85039 -23.30964 -22.80477 -21.59107 -20.36605 -19.31846 -19.07149 -18.54463 -18.35231 -17.33911 -17.21357 -16.73036 -16.27191 -16.18603 -15.85733 -15.76244 -15.50838 -15.25030 -15.05646 -14.92498 -14.69771 -14.52099 -14.35942 -14.25332 -14.06031 -13.69385 -13.53758 -13.41565 -13.35381 -13.12214 -13.08980 -12.91914 -12.69724 -12.25904 -12.17774 -12.04600 -11.92873 -11.74940 -11.37035 -11.18485 -11.12130 -10.86012 -10.30157 -10.14660 -10.00079 -8.97640 -7.95275 -5.23327 -0.48886 0.21741 1.46753 1.48608 1.56972 1.61258 1.99289 2.53814 2.56033 2.65043 3.05361 3.33555 3.37819 3.54880 3.57778 3.61898 3.66421 3.80465 3.85308 3.93346 3.95058 4.19613 4.29329 4.33264 4.50712 4.55642 4.60969 4.69190 4.75457 4.85052 4.87181 4.87575 4.92470 4.98935 5.00366 5.05560 5.13504 5.17764 5.22841 5.26570 5.34847 5.49100 5.62484 5.66445 6.27766 6.42440 7.07547 7.33618 8.12072 8.33879 9.28395 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014980 B = 0.001993 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.753161 B =14048.326418 C =15265.156662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.329 3.671 3 F -0.203 7.203 4 F -0.204 7.204 5 C -0.136 4.136 6 C -0.094 4.094 7 C -0.069 4.069 8 C -0.131 4.131 9 C 0.557 3.443 10 O -0.574 6.574 11 N -0.693 5.693 12 C 0.125 3.875 13 H 0.097 0.903 14 C -0.144 4.144 15 C -0.111 4.111 16 H 0.087 0.913 17 C 0.159 3.841 18 N -0.745 5.745 19 C -0.244 4.244 20 H 0.075 0.925 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.973 3.027 24 H -0.289 1.289 25 H -0.295 1.295 26 H -0.268 1.268 27 C -0.114 4.114 28 C -0.080 4.080 29 C -0.095 4.095 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.413 0.587 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.023 0.977 39 H 0.020 0.980 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.156 0.844 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.577 -4.370 -17.070 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.293 3.707 3 F -0.184 7.184 4 F -0.185 7.185 5 C -0.137 4.137 6 C -0.112 4.112 7 C -0.088 4.088 8 C -0.134 4.134 9 C 0.346 3.654 10 O -0.455 6.455 11 N -0.344 5.344 12 C 0.019 3.981 13 H 0.115 0.885 14 C -0.183 4.183 15 C -0.130 4.130 16 H 0.105 0.895 17 C 0.033 3.967 18 N -0.388 5.388 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.802 3.198 24 H -0.216 1.216 25 H -0.222 1.222 26 H -0.193 1.193 27 C -0.152 4.152 28 C -0.098 4.098 29 C -0.112 4.112 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.171 0.829 34 H 0.156 0.844 35 H 0.251 0.749 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.038 0.962 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.173 0.827 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -24.377 -5.198 -16.900 30.114 hybrid contribution 1.489 0.863 0.184 1.731 sum -22.888 -4.335 -16.716 28.672 Atomic orbital electron populations 1.22816 0.87737 1.06971 1.06725 1.19836 0.95533 0.74374 0.80951 1.93022 1.90951 1.37752 1.96695 1.93016 1.90962 1.81081 1.53451 1.20634 1.02373 0.95320 0.95358 1.21052 0.97860 0.93223 0.99098 1.21330 0.95361 1.00993 0.91101 1.20070 1.04123 0.95015 0.94163 1.18571 0.76785 0.86438 0.83640 1.90757 1.53838 1.16146 1.84753 1.45540 1.65967 1.12559 1.10348 1.21817 0.94014 0.97541 0.84691 0.88483 1.23432 0.96524 0.98672 0.99667 1.22698 0.96601 0.97613 0.96099 0.89510 1.20841 0.87093 0.93202 0.95580 1.42589 1.25746 1.61892 1.08558 1.19670 1.02111 1.25050 0.90788 0.90662 1.25586 1.00812 1.01695 0.99014 1.69818 1.29306 1.41939 1.21095 0.85137 0.78897 0.76724 0.79004 1.21586 1.22163 1.19274 1.23228 0.96697 0.98930 0.96385 1.21542 0.96144 0.92422 0.99742 1.21125 0.97555 1.01402 0.91151 0.87723 0.88667 0.87851 0.82927 0.84360 0.74855 0.89563 0.93235 0.95877 0.96207 0.79581 0.94070 0.88667 0.87346 0.82678 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 9.37 71.98 0.67 -0.55 16 2 C 0.33 4.41 2.32 29.85 0.07 4.48 16 3 F -0.20 -3.40 16.20 44.97 0.73 -2.68 16 4 F -0.20 -3.41 16.19 44.97 0.73 -2.68 16 5 C -0.14 -1.95 5.00 -19.81 -0.10 -2.05 16 6 C -0.09 -1.41 9.38 22.23 0.21 -1.20 16 7 C -0.07 -1.27 9.60 22.53 0.22 -1.06 16 8 C -0.13 -2.56 5.87 -20.09 -0.12 -2.68 16 9 C 0.56 13.70 7.77 86.79 0.67 14.37 16 10 O -0.57 -18.45 15.97 -3.88 -0.06 -18.51 16 11 N -0.69 -14.47 5.22 -442.89 -2.31 -16.78 16 12 C 0.12 2.90 4.30 45.52 0.20 3.09 16 13 H 0.10 2.41 7.50 -2.39 -0.02 2.39 16 14 C -0.14 -4.20 7.43 31.12 0.23 -3.97 16 15 C -0.11 -3.21 3.64 -10.26 -0.04 -3.25 16 16 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 17 C 0.16 6.09 6.10 86.38 0.53 6.62 16 18 N -0.75 -37.80 5.60 -343.45 -1.92 -39.72 16 19 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 22 N -0.97 -59.95 13.06 21.65 0.28 -59.66 16 23 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 C -0.11 -2.32 7.38 31.12 0.23 -2.09 16 28 C -0.08 -1.17 9.54 22.53 0.21 -0.95 16 29 C -0.09 -1.27 9.38 22.23 0.21 -1.06 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.15 1.74 7.59 -2.91 -0.02 1.71 16 34 H 0.14 2.64 7.65 -2.91 -0.02 2.62 16 35 H 0.41 6.48 6.74 -92.71 -0.62 5.85 16 36 H 0.09 2.59 7.90 -2.39 -0.02 2.57 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.02 0.77 7.84 -2.39 -0.02 0.75 16 40 H 0.37 20.16 7.67 -92.71 -0.71 19.45 16 41 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.11 2.02 8.10 -2.39 -0.02 2.00 16 44 H 0.16 1.54 6.41 -2.91 -0.02 1.52 16 45 H 0.16 1.53 7.59 -2.91 -0.02 1.51 16 Total: -1.00 -73.72 383.81 3.67 -70.05 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.30 Total: 28.84 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.50 Total: -7.30 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -3.95 Total: -116.17 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.06 Total: -18.51 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 1.46 Total: -5.36 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -73.72 3.67 -70.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725373744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.120 kcal (2) G-P(sol) polarization free energy of solvation -73.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds