Wall clock time and date at job start Tue Mar 31 2020 21:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46953 * 2 1 4 4 O 1.42897 * 109.47104 * 120.00151 * 2 1 3 5 5 C 1.42902 * 113.99810 * 89.99697 * 4 2 1 6 6 C 1.50699 * 109.47056 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00244 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00134 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.63052 * 0.02562 * 8 6 5 10 10 C 1.53187 * 108.77623 * 126.36901 * 9 8 6 11 11 C 1.53036 * 109.33909 * 54.61900 * 10 9 8 12 12 H 1.08998 * 109.46343 * 58.67009 * 11 10 9 13 13 C 1.52999 * 109.46209 * 178.63045 * 11 10 9 14 14 F 1.39905 * 109.47026 * 60.00082 * 13 11 10 15 15 F 1.39900 * 109.47564 * 180.02562 * 13 11 10 16 16 F 1.39900 * 109.47185 * 299.99903 * 13 11 10 17 17 C 1.53042 * 109.54058 * 298.68652 * 11 10 9 18 18 H 1.09000 * 109.49338 * 301.34556 * 17 11 10 19 19 N 1.46497 * 109.49865 * 181.28568 * 17 11 10 20 20 C 1.36937 * 120.00227 * 155.12778 * 19 17 11 21 21 H 1.08001 * 120.00030 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99974 * 179.97438 * 20 19 17 23 23 N 1.31623 * 120.00381 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46955 * 60.00083 * 24 22 20 26 26 H 1.48497 * 109.47209 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47425 * 299.99886 * 24 22 20 28 28 C 1.46927 * 120.63332 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47012 * 59.99164 * 1 2 3 30 30 H 1.08995 * 109.47537 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46818 * 299.99954 * 1 2 3 32 32 H 1.08998 * 109.46818 * 240.00046 * 2 1 3 33 33 H 1.09002 * 109.46553 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47465 * 299.99734 * 3 2 1 35 35 H 1.09002 * 109.46872 * 60.00249 * 3 2 1 36 36 H 1.08999 * 109.47075 * 60.00276 * 5 4 2 37 37 H 1.08996 * 109.47309 * 299.99819 * 5 4 2 38 38 H 1.09000 * 109.58414 * 6.58067 * 9 8 6 39 39 H 1.08999 * 109.58551 * 246.15992 * 9 8 6 40 40 H 1.09002 * 109.49796 * 174.58834 * 10 9 8 41 41 H 1.09000 * 109.49812 * 294.65558 * 10 9 8 42 42 H 0.97008 * 119.99779 * 335.12381 * 19 17 11 43 43 H 0.96995 * 120.00329 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.58621 * 353.42243 * 28 8 6 45 45 H 1.09003 * 109.58297 * 113.69808 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2000 -2.0782 0.9885 6 6 2.7014 -2.6833 2.2744 7 8 2.8753 -1.9810 3.2478 8 7 2.9566 -4.0049 2.3428 9 6 2.7514 -4.8686 1.1720 10 6 4.0439 -5.6440 0.8986 11 6 4.4635 -6.3924 2.1658 12 1 3.6655 -7.0706 2.4681 13 6 5.7356 -7.1952 1.8861 14 9 6.7600 -6.3252 1.4974 15 9 6.1191 -7.8800 3.0442 16 9 5.4906 -8.1149 0.8608 17 6 4.7304 -5.3878 3.2890 18 1 5.5118 -4.6942 2.9785 19 7 5.1616 -6.1030 4.4926 20 6 5.9250 -5.4636 5.4325 21 1 6.2097 -4.4321 5.2864 22 6 6.3331 -6.1412 6.5732 23 7 5.9858 -7.3982 6.7517 24 14 7.3751 -5.2692 7.8551 25 1 6.6330 -4.0955 8.3812 26 1 7.6751 -6.2045 8.9688 27 1 8.6452 -4.8143 7.2345 28 6 3.4463 -4.6094 3.5892 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9319 -2.2467 0.1985 37 1 1.2537 -2.5434 0.7124 38 1 2.5024 -4.2561 0.3053 39 1 1.9404 -5.5688 1.3721 40 1 3.8760 -6.3585 0.0928 41 1 4.8315 -4.9481 0.6096 42 1 4.9062 -7.0296 4.6238 43 1 6.2706 -7.8716 7.5489 44 1 3.6559 -3.8259 4.3175 45 1 2.6911 -5.2866 3.9882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734590300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:28 Heat of formation + Delta-G solvation = -219.585668 kcal Electronic energy + Delta-G solvation = -31370.591180 eV Core-core repulsion = 26587.728616 eV Total energy + Delta-G solvation = -4782.862564 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.55763 -47.12649 -46.87096 -40.19051 -38.52137 -37.33779 -34.67109 -33.03162 -32.90903 -31.40638 -29.09194 -28.23651 -27.48597 -26.16523 -24.06416 -23.31977 -22.01007 -21.59401 -20.63116 -19.21164 -17.87643 -17.71131 -17.62273 -17.24923 -16.93488 -16.58837 -16.16311 -15.63483 -14.99216 -14.74765 -14.53434 -14.28664 -13.97128 -13.76577 -13.71186 -13.50159 -13.36904 -13.24968 -13.14492 -13.01030 -13.00024 -12.93372 -12.63261 -12.62203 -12.46608 -12.27107 -12.17339 -11.68961 -11.49923 -11.27686 -11.05778 -10.98333 -10.81130 -10.77999 -10.38379 -10.03741 -9.88593 -9.78236 -9.56081 -9.12511 -8.52062 -7.07925 -5.80006 -3.12233 2.67997 2.72438 3.24039 3.46779 3.50370 3.52111 3.67029 4.18181 4.26677 4.38942 4.46082 4.61686 4.65363 4.72283 4.78647 4.86466 4.89193 4.94842 5.03355 5.12801 5.25464 5.29861 5.33549 5.39490 5.42855 5.50721 5.54967 5.56168 5.67449 5.74761 5.83994 5.89305 5.94317 5.98003 6.05302 6.46977 6.50693 6.73311 6.95150 7.48324 7.69374 8.29837 8.35445 9.48645 9.95779 10.31583 11.41268 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.003601 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.386371 B = 7774.414705 C = 9533.677124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.046 3.954 6 C 0.512 3.488 7 O -0.515 6.515 8 N -0.611 5.611 9 C 0.112 3.888 10 C -0.132 4.132 11 C -0.142 4.142 12 H 0.111 0.889 13 C 0.457 3.543 14 F -0.186 7.186 15 F -0.154 7.154 16 F -0.199 7.199 17 C 0.172 3.828 18 H 0.065 0.935 19 N -0.714 5.714 20 C -0.249 4.249 21 H 0.072 0.928 22 C -0.002 4.002 23 N -0.926 5.926 24 Si 0.908 3.092 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.098 3.902 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.390 0.610 43 H 0.257 0.743 44 H 0.100 0.900 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.517 6.748 -19.663 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.275 6.275 5 C -0.035 4.035 6 C 0.298 3.702 7 O -0.389 6.389 8 N -0.348 5.348 9 C -0.011 4.011 10 C -0.171 4.171 11 C -0.163 4.163 12 H 0.129 0.871 13 C 0.403 3.597 14 F -0.168 7.168 15 F -0.135 7.135 16 F -0.181 7.181 17 C 0.060 3.940 18 H 0.083 0.917 19 N -0.356 5.356 20 C -0.380 4.380 21 H 0.090 0.910 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.738 3.262 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.211 1.211 28 C -0.027 4.027 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.227 0.773 43 H 0.067 0.933 44 H 0.119 0.881 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.226 7.300 -18.799 22.611 hybrid contribution 0.583 -0.360 0.410 0.798 sum -9.643 6.940 -18.390 21.894 Atomic orbital electron populations 1.22316 0.95918 1.02373 1.02744 1.22163 0.93725 0.94100 0.87954 1.21852 1.02050 0.94259 1.02546 1.88093 1.86508 1.17859 1.35036 1.22307 1.00808 0.83990 0.96350 1.20191 0.78443 0.81963 0.89594 1.90750 1.50754 1.59812 1.37604 1.48274 1.66216 1.06699 1.13581 1.21667 0.97125 0.93984 0.88341 1.21971 0.98854 0.99985 0.96252 1.22829 0.94491 0.99608 0.99335 0.87054 1.20407 0.86641 0.78489 0.74159 1.93134 1.62860 1.69563 1.91210 1.93321 1.92141 1.80296 1.47725 1.93115 1.94445 1.69096 1.61440 1.20485 0.95042 0.91908 0.86562 0.91672 1.42493 1.61208 1.12897 1.18995 1.19138 1.24868 0.95791 0.98201 0.90980 1.24734 1.00765 0.95997 0.98443 1.69656 1.49713 1.09232 1.28660 0.86271 0.80334 0.78464 0.81135 1.21033 1.21672 1.21129 1.22755 0.96559 0.98301 0.85043 0.91600 0.92516 0.91549 0.92126 0.91808 0.91239 0.91570 0.90440 0.90611 0.89688 0.90594 0.89433 0.90037 0.77345 0.93335 0.88140 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.53 37.16 0.35 -0.94 16 2 C 0.08 0.68 3.34 -26.73 -0.09 0.59 16 3 C -0.15 -1.19 9.56 37.16 0.36 -0.84 16 4 O -0.36 -4.57 9.52 -55.14 -0.52 -5.10 16 5 C 0.05 0.49 4.57 36.01 0.16 0.65 16 6 C 0.51 7.81 7.78 -10.99 -0.09 7.72 16 7 O -0.51 -10.54 15.91 -14.36 -0.23 -10.77 16 8 N -0.61 -8.41 2.97 -172.80 -0.51 -8.93 16 9 C 0.11 1.03 6.34 -3.71 -0.02 1.01 16 10 C -0.13 -1.38 5.11 -26.62 -0.14 -1.51 16 11 C -0.14 -2.07 1.82 -90.58 -0.16 -2.23 16 12 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 13 C 0.46 7.71 2.68 37.16 0.10 7.81 16 14 F -0.19 -3.31 16.34 2.25 0.04 -3.27 16 15 F -0.15 -3.25 14.67 2.25 0.03 -3.21 16 16 F -0.20 -3.00 16.77 2.25 0.04 -2.96 16 17 C 0.17 3.20 2.24 -67.84 -0.15 3.05 16 18 H 0.07 1.32 7.79 -51.93 -0.40 0.92 16 19 N -0.71 -16.93 3.85 -53.34 -0.21 -17.14 16 20 C -0.25 -6.79 9.93 -15.06 -0.15 -6.94 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 22 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 23 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 24 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 C 0.10 1.71 6.01 -3.74 -0.02 1.68 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.64 7.63 -51.93 -0.40 0.24 16 37 H 0.08 0.60 7.67 -51.93 -0.40 0.20 16 38 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.72 7.77 -51.93 -0.40 0.32 16 41 H 0.08 0.89 7.84 -51.93 -0.41 0.49 16 42 H 0.39 9.81 6.54 -40.82 -0.27 9.54 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.10 2.11 7.00 -51.93 -0.36 1.75 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -33.87 373.50 -6.67 -40.54 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.69 Total: 4.47 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 0.06 Total: 9.88 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.01 Total: -52.78 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.75 Total: -15.87 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 0.11 Total: -9.45 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.87 -6.67 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734590300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.045 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds