Wall clock time and date at job start Tue Mar 31 2020 21:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46953 * 2 1 4 4 O 1.42897 * 109.47104 * 120.00151 * 2 1 3 5 5 C 1.42902 * 113.99810 * 89.99697 * 4 2 1 6 6 C 1.50699 * 109.47056 * 179.97438 * 5 4 2 7 7 O 1.21288 * 120.00244 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00134 * 180.02562 * 6 5 4 9 9 C 1.46928 * 120.63052 * 0.02562 * 8 6 5 10 10 C 1.53187 * 108.77623 * 126.36901 * 9 8 6 11 11 C 1.53036 * 109.33909 * 54.61900 * 10 9 8 12 12 H 1.08998 * 109.46343 * 58.67009 * 11 10 9 13 13 C 1.52999 * 109.46209 * 178.63045 * 11 10 9 14 14 F 1.39905 * 109.47026 * 60.00082 * 13 11 10 15 15 F 1.39900 * 109.47564 * 180.02562 * 13 11 10 16 16 F 1.39900 * 109.47185 * 299.99903 * 13 11 10 17 17 C 1.53042 * 109.54058 * 298.68652 * 11 10 9 18 18 H 1.09000 * 109.49338 * 301.34556 * 17 11 10 19 19 N 1.46497 * 109.49865 * 181.28568 * 17 11 10 20 20 C 1.36937 * 120.00227 * 155.12778 * 19 17 11 21 21 H 1.08001 * 120.00030 * 359.97438 * 20 19 17 22 22 C 1.38811 * 119.99974 * 179.97438 * 20 19 17 23 23 N 1.31623 * 120.00381 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99948 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46955 * 60.00083 * 24 22 20 26 26 H 1.48497 * 109.47209 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47425 * 299.99886 * 24 22 20 28 28 C 1.46927 * 120.63332 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47012 * 59.99164 * 1 2 3 30 30 H 1.08995 * 109.47537 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46818 * 299.99954 * 1 2 3 32 32 H 1.08998 * 109.46818 * 240.00046 * 2 1 3 33 33 H 1.09002 * 109.46553 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47465 * 299.99734 * 3 2 1 35 35 H 1.09002 * 109.46872 * 60.00249 * 3 2 1 36 36 H 1.08999 * 109.47075 * 60.00276 * 5 4 2 37 37 H 1.08996 * 109.47309 * 299.99819 * 5 4 2 38 38 H 1.09000 * 109.58414 * 6.58067 * 9 8 6 39 39 H 1.08999 * 109.58551 * 246.15992 * 9 8 6 40 40 H 1.09002 * 109.49796 * 174.58834 * 10 9 8 41 41 H 1.09000 * 109.49812 * 294.65558 * 10 9 8 42 42 H 0.97008 * 119.99779 * 335.12381 * 19 17 11 43 43 H 0.96995 * 120.00329 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.58621 * 353.42243 * 28 8 6 45 45 H 1.09003 * 109.58297 * 113.69808 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2000 -2.0782 0.9885 6 6 2.7014 -2.6833 2.2744 7 8 2.8753 -1.9810 3.2478 8 7 2.9566 -4.0049 2.3428 9 6 2.7514 -4.8686 1.1720 10 6 4.0439 -5.6440 0.8986 11 6 4.4635 -6.3924 2.1658 12 1 3.6655 -7.0706 2.4681 13 6 5.7356 -7.1952 1.8861 14 9 6.7600 -6.3252 1.4974 15 9 6.1191 -7.8800 3.0442 16 9 5.4906 -8.1149 0.8608 17 6 4.7304 -5.3878 3.2890 18 1 5.5118 -4.6942 2.9785 19 7 5.1616 -6.1030 4.4926 20 6 5.9250 -5.4636 5.4325 21 1 6.2097 -4.4321 5.2864 22 6 6.3331 -6.1412 6.5732 23 7 5.9858 -7.3982 6.7517 24 14 7.3751 -5.2692 7.8551 25 1 6.6330 -4.0955 8.3812 26 1 7.6751 -6.2045 8.9688 27 1 8.6452 -4.8143 7.2345 28 6 3.4463 -4.6094 3.5892 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9319 -2.2467 0.1985 37 1 1.2537 -2.5434 0.7124 38 1 2.5024 -4.2561 0.3053 39 1 1.9404 -5.5688 1.3721 40 1 3.8760 -6.3585 0.0928 41 1 4.8315 -4.9481 0.6096 42 1 4.9062 -7.0296 4.6238 43 1 6.2706 -7.8716 7.5489 44 1 3.6559 -3.8259 4.3175 45 1 2.6911 -5.2866 3.9882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734590300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:28 Heat of formation + Delta-G solvation = -241.826831 kcal Electronic energy + Delta-G solvation = -31371.555629 eV Core-core repulsion = 26587.728616 eV Total energy + Delta-G solvation = -4783.827013 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.94157 -48.45730 -48.36415 -41.32920 -39.44841 -38.52193 -36.27621 -34.41398 -33.67476 -33.02240 -30.56936 -29.32521 -28.08851 -27.41890 -25.85450 -24.45715 -23.42110 -22.22830 -21.97144 -20.34353 -19.40990 -19.09897 -19.06161 -18.64811 -17.99673 -17.66951 -17.11889 -16.90859 -16.47530 -15.83278 -15.70300 -15.53400 -15.42743 -15.15517 -15.08164 -14.82268 -14.70266 -14.53391 -14.51241 -14.27570 -14.20486 -14.00082 -13.75220 -13.65875 -13.42200 -13.09543 -13.03471 -12.91329 -12.83388 -12.61899 -12.32465 -12.30877 -12.21404 -12.11734 -11.75150 -11.61135 -11.58973 -11.12825 -10.75620 -10.59276 -9.82090 -9.04601 -7.97106 -5.27081 1.44431 1.46241 1.52244 1.56201 1.70907 1.93062 2.51812 2.87263 2.92587 3.10127 3.14035 3.36473 3.55798 3.66544 3.88853 4.03926 4.07471 4.10189 4.15075 4.18395 4.19930 4.28902 4.32019 4.35370 4.45863 4.57103 4.66322 4.78502 4.79609 4.86686 4.92756 4.95785 4.97647 5.05759 5.20165 5.32394 5.37556 5.40591 5.51741 6.20039 6.23400 6.45532 7.17436 7.32169 7.98439 8.24704 9.24466 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.003601 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.386371 B = 7774.414705 C = 9533.677124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.152 4.152 4 O -0.398 6.398 5 C 0.052 3.948 6 C 0.502 3.498 7 O -0.583 6.583 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.126 4.126 11 C -0.132 4.132 12 H 0.128 0.872 13 C 0.453 3.547 14 F -0.194 7.194 15 F -0.184 7.184 16 F -0.184 7.184 17 C 0.174 3.826 18 H 0.043 0.957 19 N -0.724 5.724 20 C -0.246 4.246 21 H 0.064 0.936 22 C -0.059 4.059 23 N -0.956 5.956 24 Si 0.963 3.037 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.112 3.888 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.077 0.923 42 H 0.383 0.617 43 H 0.252 0.748 44 H 0.054 0.946 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.169 6.807 -23.356 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 C -0.209 4.209 4 O -0.318 6.318 5 C -0.027 4.027 6 C 0.291 3.709 7 O -0.462 6.462 8 N -0.341 5.341 9 C -0.014 4.014 10 C -0.164 4.164 11 C -0.152 4.152 12 H 0.146 0.854 13 C 0.399 3.601 14 F -0.176 7.176 15 F -0.166 7.166 16 F -0.165 7.165 17 C 0.063 3.937 18 H 0.061 0.939 19 N -0.366 5.366 20 C -0.378 4.378 21 H 0.082 0.918 22 C -0.253 4.253 23 N -0.606 5.606 24 Si 0.792 3.208 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.014 4.014 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.096 0.904 42 H 0.218 0.782 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.901 7.366 -22.580 26.566 hybrid contribution 1.087 -0.340 1.439 1.836 sum -10.814 7.026 -21.141 24.764 Atomic orbital electron populations 1.22305 0.94996 1.02936 1.02853 1.22431 0.94484 0.93985 0.87632 1.21907 1.01472 0.94554 1.02971 1.88063 1.87131 1.19035 1.37581 1.22421 1.03295 0.83329 0.93677 1.21224 0.77237 0.81787 0.90649 1.90721 1.53721 1.61452 1.40339 1.48295 1.65146 1.07108 1.13567 1.22142 0.97076 0.94375 0.87787 1.22076 0.99331 1.00399 0.94630 1.22819 0.93706 0.98818 0.99871 0.85385 1.20755 0.87143 0.78606 0.73575 1.93117 1.63503 1.69774 1.91179 1.93263 1.92552 1.81050 1.49710 1.93137 1.94286 1.68631 1.60495 1.20538 0.94627 0.92427 0.86096 0.93908 1.42543 1.61212 1.12724 1.20075 1.19360 1.24140 0.95449 0.98821 0.91769 1.25396 1.02674 0.96783 1.00429 1.69779 1.51389 1.10351 1.29035 0.85387 0.78994 0.77401 0.79015 1.20897 1.21654 1.20761 1.22140 0.96139 0.96772 0.86344 0.89432 0.91714 0.93511 0.89311 0.92759 0.88610 0.93356 0.86974 0.86799 0.85072 0.88011 0.85658 0.90402 0.78222 0.93887 0.92701 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.53 71.98 0.69 -1.36 16 2 C 0.07 1.04 3.34 30.60 0.10 1.14 16 3 C -0.15 -2.19 9.56 71.98 0.69 -1.50 16 4 O -0.40 -9.52 9.52 -129.94 -1.24 -10.76 16 5 C 0.05 0.92 4.57 71.24 0.33 1.25 16 6 C 0.50 14.74 7.78 87.66 0.68 15.42 16 7 O -0.58 -24.81 15.91 15.98 0.25 -24.55 16 8 N -0.61 -15.53 2.97 -819.02 -2.43 -17.96 16 9 C 0.11 1.42 6.34 86.36 0.55 1.97 16 10 C -0.13 -2.08 5.11 30.67 0.16 -1.92 16 11 C -0.13 -3.59 1.82 -10.77 -0.02 -3.61 16 12 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 13 C 0.45 14.76 2.68 71.98 0.19 14.96 16 14 F -0.19 -6.77 16.34 44.97 0.73 -6.04 16 15 F -0.18 -7.88 14.67 44.97 0.66 -7.22 16 16 F -0.18 -5.07 16.77 44.97 0.75 -4.31 16 17 C 0.17 6.52 2.24 45.05 0.10 6.62 16 18 H 0.04 1.79 7.79 -2.39 -0.02 1.77 16 19 N -0.72 -35.41 3.85 -322.67 -1.24 -36.65 16 20 C -0.25 -13.89 9.93 84.03 0.83 -13.05 16 21 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 22 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 23 N -0.96 -58.29 13.06 21.65 0.28 -58.00 16 24 Si 0.96 47.77 29.55 68.60 2.03 49.80 16 25 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 28 C 0.11 3.96 6.01 86.34 0.52 4.48 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.78 7.79 -2.39 -0.02 0.76 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.11 1.22 7.63 -2.39 -0.02 1.20 16 37 H 0.11 1.17 7.67 -2.39 -0.02 1.15 16 38 H 0.13 0.65 5.93 -2.39 -0.01 0.63 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.13 1.28 7.77 -2.39 -0.02 1.26 16 41 H 0.08 1.41 7.84 -2.39 -0.02 1.39 16 42 H 0.38 19.80 6.54 -92.70 -0.61 19.19 16 43 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.05 2.45 7.00 -2.39 -0.02 2.44 16 45 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -80.88 373.50 5.48 -75.39 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.40 Total: 18.92 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 5.28 Total: 21.39 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -3.40 Total: -112.62 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.98 Total: -35.31 kcal Atomic # 9 Polarization: -19.72 SS G_CDS: 2.15 Total: -17.58 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -80.88 5.48 -75.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734590300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.432 kcal (2) G-P(sol) polarization free energy of solvation -80.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds