Wall clock time and date at job start Tue Mar 31 2020 21:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46786 * 2 1 4 4 O 1.42902 * 109.46696 * 119.99265 * 2 1 3 5 5 C 1.42898 * 113.99753 * 90.01002 * 4 2 1 6 6 C 1.50695 * 109.47094 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00392 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00145 * 179.97438 * 6 5 4 9 9 C 1.46921 * 120.62908 * 359.97438 * 8 6 5 10 10 C 1.53196 * 108.77375 * 126.41467 * 9 8 6 11 11 C 1.53038 * 109.31353 * 54.63733 * 10 9 8 12 12 H 1.08996 * 109.45651 * 58.65383 * 11 10 9 13 13 C 1.52996 * 109.45815 * 178.61300 * 11 10 9 14 14 F 1.39905 * 109.46910 * 180.02562 * 13 11 10 15 15 F 1.39898 * 109.47226 * 300.06778 * 13 11 10 16 16 F 1.39904 * 109.47279 * 60.07010 * 13 11 10 17 17 C 1.53041 * 109.53332 * 298.63348 * 11 10 9 18 18 H 1.09002 * 109.49243 * 181.34846 * 17 11 10 19 19 N 1.46494 * 109.50240 * 301.41173 * 17 11 10 20 20 C 1.36931 * 120.00458 * 205.00307 * 19 17 11 21 21 H 1.08002 * 120.00103 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47339 * 180.02562 * 24 22 20 26 26 H 1.48493 * 109.47239 * 300.00542 * 24 22 20 27 27 H 1.48504 * 109.46636 * 60.00101 * 24 22 20 28 28 C 1.46924 * 120.63132 * 180.02562 * 8 6 5 29 29 H 1.08996 * 109.47043 * 60.00529 * 1 2 3 30 30 H 1.09003 * 109.46834 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47692 * 300.00167 * 1 2 3 32 32 H 1.08997 * 109.47238 * 239.99592 * 2 1 3 33 33 H 1.09002 * 109.47025 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46870 * 299.99240 * 3 2 1 35 35 H 1.08994 * 109.47142 * 59.99495 * 3 2 1 36 36 H 1.09000 * 109.47700 * 59.99460 * 5 4 2 37 37 H 1.09006 * 109.46607 * 299.99069 * 5 4 2 38 38 H 1.09007 * 109.58801 * 6.62695 * 9 8 6 39 39 H 1.08997 * 109.59207 * 246.20388 * 9 8 6 40 40 H 1.09003 * 109.49718 * 294.67934 * 10 9 8 41 41 H 1.09002 * 109.49493 * 174.59045 * 10 9 8 42 42 H 0.97000 * 119.99459 * 25.00106 * 19 17 11 43 43 H 0.97005 * 119.99717 * 179.97438 * 23 22 20 44 44 H 1.08991 * 109.59402 * 113.80110 * 28 8 6 45 45 H 1.09000 * 109.58788 * 353.36783 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0062 -0.6735 1.1669 5 6 2.2001 -2.0780 0.9888 6 6 2.7014 -2.6830 2.2748 7 8 2.8759 -1.9805 3.2479 8 7 2.9558 -4.0048 2.3436 9 6 2.7487 -4.8688 1.1735 10 6 4.0402 -5.6461 0.8999 11 6 4.4587 -6.3944 2.1676 12 1 3.6596 -7.0710 2.4704 13 6 5.7294 -7.1995 1.8880 14 9 6.1119 -7.8841 3.0466 15 9 5.4831 -8.1183 0.8623 16 9 6.7556 -6.3314 1.5001 17 6 4.7285 -5.3892 3.2896 18 1 5.0496 -5.9213 4.1851 19 7 5.7794 -4.4587 2.8705 20 6 6.5460 -3.8232 3.8103 21 1 6.3762 -4.0082 4.8607 22 6 7.5422 -2.9418 3.4131 23 7 7.7495 -2.7167 2.1330 24 14 8.5876 -2.0743 4.6953 25 1 9.5720 -1.1930 4.0176 26 1 7.7145 -1.2562 5.5747 27 1 9.3069 -3.0840 5.5129 28 6 3.4443 -4.6092 3.5905 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 2.9321 -2.2466 0.1989 37 1 1.2538 -2.5433 0.7127 38 1 2.5001 -4.2566 0.3065 39 1 1.9370 -5.5680 1.3745 40 1 4.8286 -4.9513 0.6104 41 1 3.8709 -6.3609 0.0946 42 1 5.9322 -4.2928 1.9270 43 1 8.4454 -2.1005 1.8554 44 1 2.6894 -5.2872 3.9883 45 1 3.6547 -3.8256 4.3184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734590301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:31 Heat of formation + Delta-G solvation = -216.028818 kcal Electronic energy + Delta-G solvation = -32106.108471 eV Core-core repulsion = 27323.400144 eV Total energy + Delta-G solvation = -4782.708327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.55475 -47.13857 -46.86057 -39.97047 -38.34328 -37.13754 -34.25967 -32.79732 -32.71815 -31.23854 -29.00630 -28.15196 -27.28550 -26.07638 -23.84310 -23.33809 -22.36109 -21.36306 -20.24145 -18.81088 -17.84308 -17.73889 -17.47018 -17.13838 -16.80654 -16.34940 -15.89669 -15.38870 -14.79265 -14.64388 -14.37475 -14.22149 -13.97548 -13.71566 -13.61057 -13.48478 -13.28673 -13.14706 -13.05067 -12.96871 -12.89594 -12.75497 -12.48096 -12.35494 -12.23563 -12.19230 -11.93719 -11.58187 -11.42581 -11.08370 -10.84913 -10.81936 -10.75702 -10.66609 -10.39194 -10.01924 -9.64755 -9.62240 -9.27005 -8.99723 -8.26920 -6.94110 -5.71962 -3.01378 2.94066 3.07611 3.27229 3.50985 3.54826 3.56570 3.92889 4.23350 4.31731 4.52461 4.65299 4.69518 4.87348 4.89985 4.93870 5.09088 5.12184 5.12769 5.23243 5.33729 5.35892 5.38557 5.47041 5.49859 5.53781 5.62535 5.69967 5.72793 5.77535 5.82918 5.97660 6.04989 6.07141 6.18024 6.26332 6.44470 6.56308 6.89396 7.20550 7.73588 7.75965 8.43907 8.64880 9.57594 10.06408 10.41479 11.50182 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.004796 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.453497 B = 5836.309905 C = 7770.301920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.355 6.355 5 C 0.048 3.952 6 C 0.520 3.480 7 O -0.508 6.508 8 N -0.600 5.600 9 C 0.116 3.884 10 C -0.136 4.136 11 C -0.138 4.138 12 H 0.108 0.892 13 C 0.456 3.544 14 F -0.187 7.187 15 F -0.199 7.199 16 F -0.154 7.154 17 C 0.163 3.837 18 H 0.073 0.927 19 N -0.709 5.709 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.003 4.003 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.292 1.292 26 H -0.285 1.285 27 H -0.286 1.286 28 C 0.098 3.902 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.388 0.612 43 H 0.254 0.746 44 H 0.054 0.946 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.043 -4.989 -7.902 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.273 6.273 5 C -0.032 4.032 6 C 0.307 3.693 7 O -0.382 6.382 8 N -0.336 5.336 9 C -0.007 4.007 10 C -0.174 4.174 11 C -0.159 4.159 12 H 0.126 0.874 13 C 0.402 3.598 14 F -0.169 7.169 15 F -0.181 7.181 16 F -0.135 7.135 17 C 0.051 3.949 18 H 0.091 0.909 19 N -0.352 5.352 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.199 4.199 23 N -0.575 5.575 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.212 1.212 27 H -0.213 1.213 28 C -0.027 4.027 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.225 0.775 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.755 -4.406 -7.063 16.941 hybrid contribution 0.849 0.132 -0.077 0.863 sum -13.905 -4.275 -7.140 16.205 Atomic orbital electron populations 1.22310 0.96143 1.02172 1.02566 1.22141 0.93437 0.94196 0.88187 1.21849 1.02363 0.94237 1.02269 1.88097 1.86470 1.17986 1.34735 1.22274 1.00335 0.83853 0.96782 1.19975 0.78162 0.81748 0.89451 1.90725 1.50285 1.59449 1.37722 1.47768 1.66349 1.06684 1.12813 1.21591 0.96578 0.93832 0.88740 1.21967 0.99469 1.00154 0.95833 1.22745 0.93870 0.98726 1.00562 0.87413 1.20460 0.87710 0.78097 0.73582 1.93140 1.92686 1.81176 1.49891 1.93114 1.94516 1.69270 1.61188 1.93320 1.61295 1.68217 1.90700 1.20608 0.90298 0.89963 0.94015 0.90928 1.42437 1.36224 1.49426 1.07084 1.19066 1.10439 1.18925 0.88738 0.91246 1.24662 0.99444 0.99933 0.95891 1.69642 1.35079 1.39453 1.13352 0.86300 0.80002 0.79378 0.80701 1.21795 1.21156 1.21310 1.22471 0.95497 0.98453 0.86309 0.91715 0.92645 0.91669 0.92155 0.91592 0.91397 0.91689 0.90384 0.91121 0.89857 0.91145 0.89072 0.89975 0.77548 0.93575 0.92834 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.53 37.16 0.35 -1.29 16 2 C 0.08 0.92 3.34 -26.73 -0.09 0.83 16 3 C -0.15 -1.66 9.56 37.16 0.36 -1.31 16 4 O -0.35 -5.77 9.52 -55.14 -0.52 -6.30 16 5 C 0.05 0.68 4.57 36.00 0.16 0.84 16 6 C 0.52 9.62 7.78 -10.99 -0.09 9.54 16 7 O -0.51 -12.07 15.91 -14.35 -0.23 -12.30 16 8 N -0.60 -9.50 2.89 -172.75 -0.50 -10.00 16 9 C 0.12 1.30 6.34 -3.71 -0.02 1.28 16 10 C -0.14 -1.75 4.95 -26.61 -0.13 -1.88 16 11 C -0.14 -1.99 2.02 -90.58 -0.18 -2.17 16 12 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 13 C 0.46 7.59 2.69 37.16 0.10 7.69 16 14 F -0.19 -3.27 16.77 2.25 0.04 -3.23 16 15 F -0.20 -2.99 16.77 2.25 0.04 -2.95 16 16 F -0.15 -3.22 14.40 2.25 0.03 -3.18 16 17 C 0.16 2.96 2.45 -67.79 -0.17 2.80 16 18 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 19 N -0.71 -16.78 3.68 -53.29 -0.20 -16.98 16 20 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 23 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 24 Si 0.91 23.23 29.55 -169.99 -5.02 18.21 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 26 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 C 0.10 1.66 6.05 -3.69 -0.02 1.64 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.48 7.87 -51.93 -0.41 0.08 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.61 7.79 -51.93 -0.40 0.21 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.02 7.64 -51.93 -0.40 0.63 16 37 H 0.07 0.75 7.67 -51.93 -0.40 0.35 16 38 H 0.08 0.76 5.93 -51.92 -0.31 0.45 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.48 6.11 -51.93 -0.32 1.17 16 41 H 0.08 0.84 7.76 -51.93 -0.40 0.44 16 42 H 0.39 9.77 4.95 -40.82 -0.20 9.57 16 43 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 2.12 7.01 -51.93 -0.36 1.76 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -35.15 370.28 -6.56 -41.71 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.53 Total: 5.80 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 0.03 Total: 11.01 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.03 Total: -54.35 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.75 Total: -18.60 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 0.11 Total: -9.37 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.15 -6.56 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734590301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.315 kcal (2) G-P(sol) polarization free energy of solvation -35.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds