Wall clock time and date at job start Tue Mar 31 2020 21:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46786 * 2 1 4 4 O 1.42902 * 109.46696 * 119.99265 * 2 1 3 5 5 C 1.42898 * 113.99753 * 90.01002 * 4 2 1 6 6 C 1.50695 * 109.47094 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00392 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00145 * 179.97438 * 6 5 4 9 9 C 1.46921 * 120.62908 * 359.97438 * 8 6 5 10 10 C 1.53196 * 108.77375 * 126.41467 * 9 8 6 11 11 C 1.53038 * 109.31353 * 54.63733 * 10 9 8 12 12 H 1.08996 * 109.45651 * 58.65383 * 11 10 9 13 13 C 1.52996 * 109.45815 * 178.61300 * 11 10 9 14 14 F 1.39905 * 109.46910 * 180.02562 * 13 11 10 15 15 F 1.39898 * 109.47226 * 300.06778 * 13 11 10 16 16 F 1.39904 * 109.47279 * 60.07010 * 13 11 10 17 17 C 1.53041 * 109.53332 * 298.63348 * 11 10 9 18 18 H 1.09002 * 109.49243 * 181.34846 * 17 11 10 19 19 N 1.46494 * 109.50240 * 301.41173 * 17 11 10 20 20 C 1.36931 * 120.00458 * 205.00307 * 19 17 11 21 21 H 1.08002 * 120.00103 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47339 * 180.02562 * 24 22 20 26 26 H 1.48493 * 109.47239 * 300.00542 * 24 22 20 27 27 H 1.48504 * 109.46636 * 60.00101 * 24 22 20 28 28 C 1.46924 * 120.63132 * 180.02562 * 8 6 5 29 29 H 1.08996 * 109.47043 * 60.00529 * 1 2 3 30 30 H 1.09003 * 109.46834 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47692 * 300.00167 * 1 2 3 32 32 H 1.08997 * 109.47238 * 239.99592 * 2 1 3 33 33 H 1.09002 * 109.47025 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46870 * 299.99240 * 3 2 1 35 35 H 1.08994 * 109.47142 * 59.99495 * 3 2 1 36 36 H 1.09000 * 109.47700 * 59.99460 * 5 4 2 37 37 H 1.09006 * 109.46607 * 299.99069 * 5 4 2 38 38 H 1.09007 * 109.58801 * 6.62695 * 9 8 6 39 39 H 1.08997 * 109.59207 * 246.20388 * 9 8 6 40 40 H 1.09003 * 109.49718 * 294.67934 * 10 9 8 41 41 H 1.09002 * 109.49493 * 174.59045 * 10 9 8 42 42 H 0.97000 * 119.99459 * 25.00106 * 19 17 11 43 43 H 0.97005 * 119.99717 * 179.97438 * 23 22 20 44 44 H 1.08991 * 109.59402 * 113.80110 * 28 8 6 45 45 H 1.09000 * 109.58788 * 353.36783 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0062 -0.6735 1.1669 5 6 2.2001 -2.0780 0.9888 6 6 2.7014 -2.6830 2.2748 7 8 2.8759 -1.9805 3.2479 8 7 2.9558 -4.0048 2.3436 9 6 2.7487 -4.8688 1.1735 10 6 4.0402 -5.6461 0.8999 11 6 4.4587 -6.3944 2.1676 12 1 3.6596 -7.0710 2.4704 13 6 5.7294 -7.1995 1.8880 14 9 6.1119 -7.8841 3.0466 15 9 5.4831 -8.1183 0.8623 16 9 6.7556 -6.3314 1.5001 17 6 4.7285 -5.3892 3.2896 18 1 5.0496 -5.9213 4.1851 19 7 5.7794 -4.4587 2.8705 20 6 6.5460 -3.8232 3.8103 21 1 6.3762 -4.0082 4.8607 22 6 7.5422 -2.9418 3.4131 23 7 7.7495 -2.7167 2.1330 24 14 8.5876 -2.0743 4.6953 25 1 9.5720 -1.1930 4.0176 26 1 7.7145 -1.2562 5.5747 27 1 9.3069 -3.0840 5.5129 28 6 3.4443 -4.6092 3.5905 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6765 1.9564 0.8899 36 1 2.9321 -2.2466 0.1989 37 1 1.2538 -2.5433 0.7127 38 1 2.5001 -4.2566 0.3065 39 1 1.9370 -5.5680 1.3745 40 1 4.8286 -4.9513 0.6104 41 1 3.8709 -6.3609 0.0946 42 1 5.9322 -4.2928 1.9270 43 1 8.4454 -2.1005 1.8554 44 1 2.6894 -5.2872 3.9883 45 1 3.6547 -3.8256 4.3184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734590301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:30 Heat of formation + Delta-G solvation = -239.554785 kcal Electronic energy + Delta-G solvation = -32107.128634 eV Core-core repulsion = 27323.400144 eV Total energy + Delta-G solvation = -4783.728490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.90302 -48.43698 -48.31361 -41.25773 -39.47165 -38.47502 -35.91741 -34.32454 -33.68395 -32.81273 -30.64445 -29.33377 -28.10542 -27.39669 -25.77074 -24.47425 -23.75272 -22.24353 -21.57789 -20.17250 -19.30369 -19.07725 -19.06335 -18.57409 -17.95930 -17.57997 -17.07511 -16.79066 -16.36795 -15.98361 -15.73112 -15.49638 -15.37008 -15.10160 -15.04184 -14.80727 -14.54438 -14.51118 -14.45218 -14.37236 -14.16385 -13.79073 -13.70154 -13.55726 -13.46454 -13.10038 -13.02880 -12.84741 -12.83053 -12.75730 -12.35369 -12.32809 -12.13651 -11.97908 -11.69471 -11.62536 -11.55248 -11.05340 -10.65377 -10.58752 -9.66533 -8.88643 -7.92545 -5.17347 1.41079 1.45292 1.48903 1.65798 1.86392 2.00401 2.54653 2.92053 2.98240 3.10101 3.26227 3.42084 3.62000 3.78816 3.96043 3.96894 4.03670 4.08519 4.10704 4.15059 4.29498 4.30002 4.33061 4.39730 4.61757 4.68742 4.75230 4.76374 4.79519 4.82721 4.87294 4.93250 4.94086 5.11648 5.27299 5.28287 5.35544 5.50466 5.65133 6.22085 6.28770 6.53630 7.32481 7.38513 8.10793 8.33476 9.30155 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.004796 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.453497 B = 5836.309905 C = 7770.301920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 C -0.152 4.152 4 O -0.398 6.398 5 C 0.053 3.947 6 C 0.504 3.496 7 O -0.580 6.580 8 N -0.597 5.597 9 C 0.111 3.889 10 C -0.133 4.133 11 C -0.126 4.126 12 H 0.158 0.842 13 C 0.451 3.549 14 F -0.195 7.195 15 F -0.186 7.186 16 F -0.186 7.186 17 C 0.156 3.844 18 H 0.067 0.933 19 N -0.718 5.718 20 C -0.230 4.230 21 H 0.068 0.932 22 C -0.067 4.067 23 N -0.960 5.960 24 Si 0.957 3.043 25 H -0.296 1.296 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.104 3.896 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.050 0.950 41 H 0.120 0.880 42 H 0.380 0.620 43 H 0.246 0.754 44 H 0.100 0.900 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.942 -7.045 -9.576 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 C -0.209 4.209 4 O -0.318 6.318 5 C -0.026 4.026 6 C 0.293 3.707 7 O -0.459 6.459 8 N -0.331 5.331 9 C -0.010 4.010 10 C -0.171 4.171 11 C -0.146 4.146 12 H 0.176 0.824 13 C 0.397 3.603 14 F -0.176 7.176 15 F -0.167 7.167 16 F -0.167 7.167 17 C 0.045 3.955 18 H 0.084 0.916 19 N -0.360 5.360 20 C -0.362 4.362 21 H 0.086 0.914 22 C -0.260 4.260 23 N -0.611 5.611 24 Si 0.787 3.213 25 H -0.222 1.222 26 H -0.218 1.218 27 H -0.202 1.202 28 C -0.022 4.022 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.069 0.931 41 H 0.138 0.862 42 H 0.215 0.785 43 H 0.055 0.945 44 H 0.118 0.882 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.695 -6.542 -8.750 20.796 hybrid contribution 1.691 0.649 0.450 1.866 sum -16.003 -5.893 -8.299 18.966 Atomic orbital electron populations 1.22261 0.94129 1.03071 1.03055 1.22448 0.95043 0.93860 0.87484 1.21908 1.01023 0.94761 1.03201 1.88061 1.87186 1.19180 1.37359 1.22355 1.02613 0.83388 0.94248 1.20922 0.77373 0.82249 0.90156 1.90686 1.53608 1.61284 1.40343 1.47932 1.64792 1.06613 1.13786 1.22053 0.96889 0.94196 0.87834 1.22002 0.99006 1.00136 0.95962 1.22783 0.93867 0.98134 0.99852 0.82446 1.20854 0.87741 0.78163 0.73551 1.93126 1.92875 1.81311 1.50336 1.93134 1.94307 1.68729 1.60569 1.93265 1.63011 1.69401 1.91031 1.20835 0.89266 0.89871 0.95484 0.91556 1.42515 1.37334 1.50177 1.05977 1.19396 1.09712 1.17683 0.89456 0.91445 1.25313 1.01508 1.01781 0.97387 1.69774 1.35953 1.40700 1.14676 0.85455 0.78561 0.78450 0.78789 1.22196 1.21751 1.20217 1.22220 0.96091 0.97429 0.86417 0.89247 0.91537 0.93121 0.90204 0.93726 0.88247 0.92958 0.89252 0.86484 0.87194 0.86353 0.93106 0.86218 0.78506 0.94474 0.88165 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.53 71.98 0.69 -2.03 16 2 C 0.07 1.50 3.34 30.60 0.10 1.60 16 3 C -0.15 -3.31 9.56 71.98 0.69 -2.62 16 4 O -0.40 -12.87 9.52 -129.94 -1.24 -14.10 16 5 C 0.05 1.42 4.57 71.23 0.33 1.74 16 6 C 0.50 18.49 7.78 87.65 0.68 19.17 16 7 O -0.58 -28.82 15.91 16.00 0.25 -28.57 16 8 N -0.60 -17.64 2.89 -818.83 -2.37 -20.00 16 9 C 0.11 1.95 6.34 86.36 0.55 2.49 16 10 C -0.13 -2.92 4.95 30.67 0.15 -2.76 16 11 C -0.13 -3.21 2.02 -10.77 -0.02 -3.24 16 12 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 13 C 0.45 14.16 2.69 71.98 0.19 14.35 16 14 F -0.19 -6.52 16.77 44.97 0.75 -5.77 16 15 F -0.19 -5.01 16.77 44.97 0.75 -4.26 16 16 F -0.19 -7.79 14.40 44.97 0.65 -7.14 16 17 C 0.16 5.48 2.45 45.08 0.11 5.59 16 18 H 0.07 2.41 7.70 -2.39 -0.02 2.40 16 19 N -0.72 -34.65 3.68 -322.52 -1.19 -35.84 16 20 C -0.23 -13.09 9.93 84.03 0.83 -12.25 16 21 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 23 N -0.96 -60.47 13.06 21.65 0.28 -60.19 16 24 Si 0.96 49.50 29.55 68.60 2.03 51.53 16 25 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 26 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 27 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 28 C 0.10 3.40 6.05 86.38 0.52 3.92 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.40 7.79 -2.39 -0.02 1.38 16 33 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 2.15 7.64 -2.39 -0.02 2.13 16 37 H 0.12 1.97 7.67 -2.38 -0.02 1.95 16 38 H 0.11 1.40 5.93 -2.38 -0.01 1.38 16 39 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 1.58 6.11 -2.39 -0.01 1.57 16 41 H 0.12 1.80 7.76 -2.39 -0.02 1.78 16 42 H 0.38 19.65 4.95 -92.71 -0.46 19.19 16 43 H 0.25 15.28 8.31 -92.70 -0.77 14.51 16 44 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.05 2.28 7.01 -2.39 -0.02 2.27 16 Total: -1.00 -84.80 370.28 5.78 -79.02 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.56 Total: 22.92 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: 5.29 Total: 22.40 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -3.27 Total: -116.03 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.98 Total: -42.67 kcal Atomic # 9 Polarization: -19.33 SS G_CDS: 2.16 Total: -17.17 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.03 Total: 51.53 kcal Total: -84.80 5.78 -79.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734590301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.530 kcal (2) G-P(sol) polarization free energy of solvation -84.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds