Wall clock time and date at job start Tue Mar 31 2020 21:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47371 * 2 1 4 4 O 1.42904 * 109.47123 * 119.99896 * 2 1 3 5 5 C 1.42904 * 113.99551 * 89.99986 * 4 2 1 6 6 C 1.50708 * 109.46642 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00123 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99615 * 179.97438 * 6 5 4 9 9 C 1.46929 * 120.63227 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.77313 * 233.58572 * 9 8 6 11 11 C 1.53039 * 109.31499 * 305.36301 * 10 9 8 12 12 H 1.08999 * 109.46511 * 301.34624 * 11 10 9 13 13 C 1.53004 * 109.46050 * 181.38717 * 11 10 9 14 14 F 1.39896 * 109.47076 * 299.93124 * 13 11 10 15 15 F 1.39902 * 109.47199 * 59.93404 * 13 11 10 16 16 F 1.39903 * 109.46870 * 179.97438 * 13 11 10 17 17 C 1.53045 * 109.53790 * 61.36737 * 11 10 9 18 18 H 1.09004 * 109.52161 * 58.60183 * 17 11 10 19 19 N 1.46499 * 109.49904 * 178.68314 * 17 11 10 20 20 C 1.36939 * 119.99933 * 205.11404 * 19 17 11 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47144 * 90.00258 * 24 22 20 26 26 H 1.48500 * 109.47140 * 210.00775 * 24 22 20 27 27 H 1.48502 * 109.46967 * 330.00206 * 24 22 20 28 28 C 1.46923 * 120.62899 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.46871 * 299.99845 * 1 2 3 30 30 H 1.09001 * 109.46859 * 59.99435 * 1 2 3 31 31 H 1.08994 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47054 * 239.99841 * 2 1 3 33 33 H 1.08998 * 109.46824 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46911 * 299.99969 * 3 2 1 35 35 H 1.08996 * 109.47161 * 59.99906 * 3 2 1 36 36 H 1.08990 * 109.47442 * 60.00121 * 5 4 2 37 37 H 1.09002 * 109.47034 * 299.99262 * 5 4 2 38 38 H 1.08990 * 109.58590 * 353.37519 * 9 8 6 39 39 H 1.08999 * 109.58368 * 113.80408 * 9 8 6 40 40 H 1.08994 * 109.50006 * 65.32074 * 10 9 8 41 41 H 1.09007 * 109.49411 * 185.38225 * 10 9 8 42 42 H 0.97001 * 119.99790 * 24.83377 * 19 17 11 43 43 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.59020 * 6.62973 * 28 8 6 45 45 H 1.09002 * 109.59306 * 246.19838 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9886 6 6 2.7014 -2.6833 2.2746 7 8 2.8752 -1.9809 3.2479 8 7 2.9557 -4.0050 2.3432 9 6 2.7494 -4.8688 1.1727 10 6 1.8401 -6.0344 1.5743 11 6 2.4406 -6.7507 2.7860 12 1 3.4391 -7.1102 2.5374 13 6 1.5529 -7.9367 3.1686 14 9 0.2714 -7.4758 3.4887 15 9 1.4731 -8.8262 2.0917 16 9 2.1020 -8.5921 4.2760 17 6 2.5277 -5.7780 3.9643 18 1 1.5327 -5.3991 4.1982 19 7 3.0734 -6.4729 5.1328 20 6 2.7859 -6.0222 6.3936 21 1 2.1604 -5.1518 6.5263 22 6 3.2982 -6.6841 7.5009 23 7 4.0607 -7.7447 7.3391 24 14 2.9066 -6.0689 9.2206 25 1 1.6684 -6.7255 9.7113 26 1 4.0336 -6.3940 10.1313 27 1 2.7065 -4.5978 9.1864 28 6 3.4454 -4.6093 3.5897 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9564 0.8899 36 1 2.9318 -2.2467 0.1987 37 1 1.2537 -2.5434 0.7125 38 1 2.2781 -4.2959 0.3743 39 1 3.7093 -5.2554 0.8303 40 1 0.8515 -5.6532 1.8300 41 1 1.7563 -6.7338 0.7423 42 1 3.6350 -7.2548 5.0136 43 1 4.4190 -8.2070 8.1130 44 1 3.4331 -3.8652 4.3860 45 1 4.4619 -4.9749 3.4439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734590302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:34 Heat of formation + Delta-G solvation = -219.623050 kcal Electronic energy + Delta-G solvation = -31398.654415 eV Core-core repulsion = 26615.790230 eV Total energy + Delta-G solvation = -4782.864185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.55790 -47.12815 -46.87023 -40.19068 -38.51906 -37.33807 -34.67170 -33.03044 -32.90798 -31.40485 -29.09178 -28.23436 -27.48206 -26.16345 -24.06475 -23.32003 -22.01153 -21.58981 -20.63467 -19.20976 -17.87767 -17.70542 -17.62511 -17.26492 -16.92710 -16.60538 -16.14389 -15.57956 -15.08271 -14.77101 -14.45457 -14.29221 -13.97428 -13.84000 -13.57650 -13.52820 -13.41188 -13.29185 -13.08863 -13.02813 -12.97741 -12.93163 -12.68477 -12.56713 -12.43520 -12.33689 -12.14197 -11.69667 -11.49057 -11.28063 -11.06328 -10.97643 -10.82652 -10.78544 -10.37051 -10.01510 -9.88554 -9.78580 -9.56126 -9.13246 -8.52155 -7.07877 -5.80280 -3.12412 2.67594 2.72866 3.24009 3.45493 3.51036 3.53074 3.67003 4.18154 4.26585 4.38968 4.46133 4.61584 4.65641 4.72669 4.78727 4.86358 4.89322 4.95092 5.03198 5.12779 5.25370 5.30952 5.33451 5.39408 5.42899 5.52043 5.54939 5.55991 5.67439 5.74631 5.83882 5.90577 5.94199 5.97943 6.05143 6.46835 6.50565 6.73163 6.95153 7.48291 7.69780 8.29818 8.35228 9.48517 9.95628 10.31433 11.41067 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003638 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.620694 B = 7695.328876 C = 9443.978794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.357 6.357 5 C 0.045 3.955 6 C 0.512 3.488 7 O -0.515 6.515 8 N -0.611 5.611 9 C 0.112 3.888 10 C -0.132 4.132 11 C -0.142 4.142 12 H 0.111 0.889 13 C 0.457 3.543 14 F -0.186 7.186 15 F -0.199 7.199 16 F -0.154 7.154 17 C 0.172 3.828 18 H 0.065 0.935 19 N -0.714 5.714 20 C -0.248 4.248 21 H 0.073 0.927 22 C -0.003 4.003 23 N -0.925 5.925 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.098 3.902 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.390 0.610 43 H 0.256 0.744 44 H 0.100 0.900 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 7.819 -21.445 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.275 6.275 5 C -0.035 4.035 6 C 0.298 3.702 7 O -0.389 6.389 8 N -0.348 5.348 9 C -0.011 4.011 10 C -0.171 4.171 11 C -0.163 4.163 12 H 0.129 0.871 13 C 0.403 3.597 14 F -0.168 7.168 15 F -0.181 7.181 16 F -0.135 7.135 17 C 0.060 3.940 18 H 0.083 0.917 19 N -0.356 5.356 20 C -0.379 4.379 21 H 0.091 0.909 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.737 3.263 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.026 4.026 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.227 0.773 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.679 8.345 -20.517 22.638 hybrid contribution -0.216 -0.526 0.653 0.866 sum -4.895 7.818 -19.864 21.902 Atomic orbital electron populations 1.22318 0.95858 1.02471 1.02764 1.22163 0.93800 0.94049 0.87908 1.21850 1.01940 0.94304 1.02583 1.88095 1.86502 1.17851 1.35057 1.22309 1.00879 0.83998 0.96272 1.20189 0.78376 0.82031 0.89592 1.90748 1.50746 1.59898 1.37518 1.48272 1.66415 1.06547 1.13541 1.21667 0.99882 0.91691 0.87878 1.21972 1.00279 0.97784 0.97026 1.22837 0.99803 0.94366 0.99267 0.87050 1.20411 0.79773 0.84528 0.75000 1.93131 1.41944 1.88700 1.92998 1.93116 1.96556 1.71769 1.56648 1.93323 1.84709 1.82344 1.53101 1.20511 0.97614 0.90107 0.85779 0.91662 1.42500 1.59649 1.33348 1.00111 1.19183 1.26214 1.09737 0.82770 0.90930 1.24736 0.99754 0.97571 0.97922 1.69670 1.37388 1.20764 1.29407 0.86199 0.77329 0.78310 0.84418 1.21615 1.21715 1.20517 1.22773 0.97927 0.97111 0.84834 0.91503 0.91606 0.92445 0.92166 0.91887 0.91245 0.91541 0.90555 0.90498 0.89689 0.90589 0.90046 0.89434 0.77345 0.93397 0.88124 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.53 37.16 0.35 -1.00 16 2 C 0.08 0.68 3.34 -26.73 -0.09 0.59 16 3 C -0.15 -1.17 9.56 37.16 0.36 -0.81 16 4 O -0.36 -4.57 9.52 -55.14 -0.52 -5.10 16 5 C 0.05 0.49 4.57 36.01 0.16 0.65 16 6 C 0.51 7.80 7.78 -10.98 -0.09 7.72 16 7 O -0.51 -10.53 15.91 -14.35 -0.23 -10.76 16 8 N -0.61 -8.41 2.97 -172.74 -0.51 -8.92 16 9 C 0.11 1.03 6.34 -3.71 -0.02 1.01 16 10 C -0.13 -1.38 5.11 -26.61 -0.14 -1.51 16 11 C -0.14 -2.07 1.82 -90.57 -0.16 -2.24 16 12 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 13 C 0.46 7.71 2.68 37.16 0.10 7.81 16 14 F -0.19 -3.31 16.33 2.25 0.04 -3.28 16 15 F -0.20 -3.00 16.77 2.25 0.04 -2.96 16 16 F -0.15 -3.25 14.67 2.25 0.03 -3.22 16 17 C 0.17 3.20 2.24 -67.78 -0.15 3.04 16 18 H 0.07 1.33 7.78 -51.93 -0.40 0.92 16 19 N -0.71 -16.93 3.85 -53.28 -0.21 -17.14 16 20 C -0.25 -6.76 9.93 -15.06 -0.15 -6.91 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 23 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 24 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 28 C 0.10 1.71 6.02 -3.69 -0.02 1.68 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 7.87 -51.93 -0.41 0.02 16 32 H 0.06 0.40 7.79 -51.93 -0.40 0.00 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 37 H 0.08 0.64 7.42 -51.93 -0.39 0.26 16 38 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 41 H 0.09 0.72 7.77 -51.93 -0.40 0.32 16 42 H 0.39 9.80 6.54 -40.82 -0.27 9.54 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.10 2.11 7.00 -51.93 -0.36 1.75 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -33.90 373.50 -6.67 -40.57 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.69 Total: 4.44 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 0.06 Total: 9.86 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.01 Total: -52.75 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.75 Total: -15.86 kcal Atomic # 9 Polarization: -9.56 SS G_CDS: 0.11 Total: -9.46 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.90 -6.67 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734590302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.052 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds