Wall clock time and date at job start Tue Mar 31 2020 21:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47371 * 2 1 4 4 O 1.42904 * 109.47123 * 119.99896 * 2 1 3 5 5 C 1.42904 * 113.99551 * 89.99986 * 4 2 1 6 6 C 1.50708 * 109.46642 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00123 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99615 * 179.97438 * 6 5 4 9 9 C 1.46929 * 120.63227 * 0.02562 * 8 6 5 10 10 C 1.53192 * 108.77313 * 233.58572 * 9 8 6 11 11 C 1.53039 * 109.31499 * 305.36301 * 10 9 8 12 12 H 1.08999 * 109.46511 * 301.34624 * 11 10 9 13 13 C 1.53004 * 109.46050 * 181.38717 * 11 10 9 14 14 F 1.39896 * 109.47076 * 299.93124 * 13 11 10 15 15 F 1.39902 * 109.47199 * 59.93404 * 13 11 10 16 16 F 1.39903 * 109.46870 * 179.97438 * 13 11 10 17 17 C 1.53045 * 109.53790 * 61.36737 * 11 10 9 18 18 H 1.09004 * 109.52161 * 58.60183 * 17 11 10 19 19 N 1.46499 * 109.49904 * 178.68314 * 17 11 10 20 20 C 1.36939 * 119.99933 * 205.11404 * 19 17 11 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47144 * 90.00258 * 24 22 20 26 26 H 1.48500 * 109.47140 * 210.00775 * 24 22 20 27 27 H 1.48502 * 109.46967 * 330.00206 * 24 22 20 28 28 C 1.46923 * 120.62899 * 179.97438 * 8 6 5 29 29 H 1.09004 * 109.46871 * 299.99845 * 1 2 3 30 30 H 1.09001 * 109.46859 * 59.99435 * 1 2 3 31 31 H 1.08994 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47054 * 239.99841 * 2 1 3 33 33 H 1.08998 * 109.46824 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.46911 * 299.99969 * 3 2 1 35 35 H 1.08996 * 109.47161 * 59.99906 * 3 2 1 36 36 H 1.08990 * 109.47442 * 60.00121 * 5 4 2 37 37 H 1.09002 * 109.47034 * 299.99262 * 5 4 2 38 38 H 1.08990 * 109.58590 * 353.37519 * 9 8 6 39 39 H 1.08999 * 109.58368 * 113.80408 * 9 8 6 40 40 H 1.08994 * 109.50006 * 65.32074 * 10 9 8 41 41 H 1.09007 * 109.49411 * 185.38225 * 10 9 8 42 42 H 0.97001 * 119.99790 * 24.83377 * 19 17 11 43 43 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.59020 * 6.62973 * 28 8 6 45 45 H 1.09002 * 109.59306 * 246.19838 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0782 0.9886 6 6 2.7014 -2.6833 2.2746 7 8 2.8752 -1.9809 3.2479 8 7 2.9557 -4.0050 2.3432 9 6 2.7494 -4.8688 1.1727 10 6 1.8401 -6.0344 1.5743 11 6 2.4406 -6.7507 2.7860 12 1 3.4391 -7.1102 2.5374 13 6 1.5529 -7.9367 3.1686 14 9 0.2714 -7.4758 3.4887 15 9 1.4731 -8.8262 2.0917 16 9 2.1020 -8.5921 4.2760 17 6 2.5277 -5.7780 3.9643 18 1 1.5327 -5.3991 4.1982 19 7 3.0734 -6.4729 5.1328 20 6 2.7859 -6.0222 6.3936 21 1 2.1604 -5.1518 6.5263 22 6 3.2982 -6.6841 7.5009 23 7 4.0607 -7.7447 7.3391 24 14 2.9066 -6.0689 9.2206 25 1 1.6684 -6.7255 9.7113 26 1 4.0336 -6.3940 10.1313 27 1 2.7065 -4.5978 9.1864 28 6 3.4454 -4.6093 3.5897 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9564 0.8899 36 1 2.9318 -2.2467 0.1987 37 1 1.2537 -2.5434 0.7125 38 1 2.2781 -4.2959 0.3743 39 1 3.7093 -5.2554 0.8303 40 1 0.8515 -5.6532 1.8300 41 1 1.7563 -6.7338 0.7423 42 1 3.6350 -7.2548 5.0136 43 1 4.4190 -8.2070 8.1130 44 1 3.4331 -3.8652 4.3860 45 1 4.4619 -4.9749 3.4439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734590302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:33 Heat of formation + Delta-G solvation = -241.898319 kcal Electronic energy + Delta-G solvation = -31399.620343 eV Core-core repulsion = 26615.790230 eV Total energy + Delta-G solvation = -4783.830113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.94361 -48.46011 -48.36588 -41.32826 -39.44636 -38.52190 -36.27736 -34.41442 -33.67433 -33.02097 -30.56896 -29.32427 -28.09231 -27.41634 -25.85525 -24.45744 -23.42219 -22.22388 -21.97731 -20.34176 -19.41233 -19.09667 -19.06392 -18.65379 -17.98614 -17.70866 -17.13651 -16.77791 -16.54567 -15.88906 -15.64828 -15.56611 -15.46969 -15.10300 -15.00905 -14.82832 -14.71376 -14.58185 -14.49920 -14.42480 -14.09937 -13.94063 -13.77563 -13.65713 -13.43904 -13.10142 -13.03334 -12.93057 -12.84286 -12.62393 -12.31803 -12.29384 -12.19948 -12.11800 -11.75605 -11.61566 -11.58503 -11.13747 -10.75809 -10.59148 -9.82068 -9.04500 -7.97432 -5.27280 1.44277 1.44746 1.53552 1.56157 1.71184 1.92960 2.51567 2.87332 2.92479 3.10148 3.13836 3.36371 3.55891 3.66372 3.88879 4.03769 4.07088 4.10511 4.14787 4.18334 4.20118 4.28930 4.32192 4.35424 4.45794 4.57063 4.66294 4.77950 4.79700 4.86719 4.92603 4.95316 4.97874 5.05658 5.20057 5.32624 5.37167 5.40726 5.51869 6.20117 6.23333 6.45610 7.17558 7.32064 7.98241 8.24563 9.24350 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003638 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.620694 B = 7695.328876 C = 9443.978794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 C -0.151 4.151 4 O -0.398 6.398 5 C 0.052 3.948 6 C 0.502 3.498 7 O -0.583 6.583 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.126 4.126 11 C -0.132 4.132 12 H 0.129 0.871 13 C 0.453 3.547 14 F -0.194 7.194 15 F -0.184 7.184 16 F -0.184 7.184 17 C 0.173 3.827 18 H 0.043 0.957 19 N -0.724 5.724 20 C -0.244 4.244 21 H 0.064 0.936 22 C -0.060 4.060 23 N -0.956 5.956 24 Si 0.963 3.037 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.112 3.888 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.383 0.617 43 H 0.252 0.748 44 H 0.054 0.946 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 8.057 -25.456 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 C -0.208 4.208 4 O -0.318 6.318 5 C -0.027 4.027 6 C 0.291 3.709 7 O -0.462 6.462 8 N -0.341 5.341 9 C -0.014 4.014 10 C -0.164 4.164 11 C -0.152 4.152 12 H 0.147 0.853 13 C 0.399 3.601 14 F -0.176 7.176 15 F -0.165 7.165 16 F -0.166 7.166 17 C 0.063 3.937 18 H 0.061 0.939 19 N -0.366 5.366 20 C -0.376 4.376 21 H 0.082 0.918 22 C -0.253 4.253 23 N -0.605 5.605 24 Si 0.792 3.208 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.014 4.014 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.143 0.857 42 H 0.218 0.782 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.333 8.589 -24.613 26.608 hybrid contribution -0.086 -0.574 1.798 1.889 sum -5.420 8.015 -22.815 24.781 Atomic orbital electron populations 1.22319 0.95298 1.02827 1.02816 1.22430 0.94282 0.94087 0.87671 1.21900 1.01583 0.94416 1.02924 1.88066 1.87093 1.19012 1.37638 1.22425 1.03229 0.83286 0.93794 1.21222 0.77108 0.81912 0.90654 1.90719 1.53668 1.61576 1.40267 1.48293 1.65427 1.06959 1.13442 1.22143 1.01537 0.90977 0.86719 1.22078 0.99914 0.98593 0.95862 1.22827 1.00752 0.92649 0.98984 0.85349 1.20764 0.79685 0.85205 0.74450 1.93114 1.42582 1.88771 1.93127 1.93138 1.96485 1.71427 1.55493 1.93265 1.85175 1.83102 1.55031 1.20565 0.96087 0.91161 0.85898 0.93935 1.42548 1.59871 1.33542 1.00600 1.19390 1.24823 1.08805 0.84602 0.91787 1.25395 1.00610 0.98271 1.01043 1.69790 1.38954 1.22019 1.29777 0.85314 0.76919 0.77790 0.80770 1.21474 1.21702 1.20247 1.22159 0.97916 0.95342 0.85969 0.93650 0.89369 0.91922 0.89125 0.92490 0.88638 0.93469 0.86472 0.87294 0.85088 0.87957 0.90456 0.85658 0.78214 0.93903 0.92691 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.53 71.98 0.69 -1.53 16 2 C 0.07 1.04 3.34 30.60 0.10 1.14 16 3 C -0.15 -2.11 9.56 71.98 0.69 -1.42 16 4 O -0.40 -9.51 9.52 -129.94 -1.24 -10.75 16 5 C 0.05 0.92 4.57 71.24 0.33 1.24 16 6 C 0.50 14.72 7.78 87.66 0.68 15.40 16 7 O -0.58 -24.79 15.91 16.01 0.25 -24.54 16 8 N -0.61 -15.51 2.97 -818.82 -2.43 -17.94 16 9 C 0.11 1.42 6.34 86.36 0.55 1.96 16 10 C -0.13 -2.09 5.11 30.67 0.16 -1.93 16 11 C -0.13 -3.59 1.82 -10.76 -0.02 -3.61 16 12 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 13 C 0.45 14.78 2.68 71.98 0.19 14.97 16 14 F -0.19 -6.80 16.33 44.97 0.73 -6.07 16 15 F -0.18 -5.07 16.77 44.97 0.75 -4.32 16 16 F -0.18 -7.89 14.67 44.97 0.66 -7.23 16 17 C 0.17 6.51 2.24 45.09 0.10 6.61 16 18 H 0.04 1.78 7.78 -2.38 -0.02 1.77 16 19 N -0.72 -35.40 3.85 -322.48 -1.24 -36.64 16 20 C -0.24 -13.80 9.93 84.03 0.83 -12.97 16 21 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 22 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 23 N -0.96 -58.26 13.06 21.65 0.28 -57.98 16 24 Si 0.96 47.81 29.55 68.60 2.03 49.84 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 27 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 28 C 0.11 3.96 6.02 86.38 0.52 4.48 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.72 7.87 -2.39 -0.02 0.70 16 32 H 0.09 0.76 7.79 -2.39 -0.02 0.74 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 1.13 7.89 -2.39 -0.02 1.12 16 37 H 0.11 1.24 7.42 -2.39 -0.02 1.22 16 38 H 0.13 0.65 5.93 -2.39 -0.01 0.63 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.41 7.85 -2.39 -0.02 1.39 16 41 H 0.13 1.28 7.77 -2.38 -0.02 1.26 16 42 H 0.38 19.79 6.54 -92.71 -0.61 19.18 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.05 2.45 7.00 -2.39 -0.02 2.44 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -80.99 373.50 5.49 -75.50 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.40 Total: 18.78 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 5.28 Total: 21.35 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -3.39 Total: -112.56 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.98 Total: -35.28 kcal Atomic # 9 Polarization: -19.77 SS G_CDS: 2.15 Total: -17.62 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -80.99 5.49 -75.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734590302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.399 kcal (2) G-P(sol) polarization free energy of solvation -80.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds