Wall clock time and date at job start Tue Mar 31 2020 21:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46791 * 2 1 4 4 O 1.42896 * 109.47110 * 120.00124 * 2 1 3 5 5 C 1.42902 * 114.00291 * 89.99529 * 4 2 1 6 6 C 1.50698 * 109.47064 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00087 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00162 * 180.02562 * 6 5 4 9 9 C 1.46933 * 120.62602 * 359.97327 * 8 6 5 10 10 C 1.53188 * 108.77495 * 233.63137 * 9 8 6 11 11 C 1.53034 * 109.31404 * 305.36890 * 10 9 8 12 12 H 1.09000 * 109.46169 * 301.34220 * 11 10 9 13 13 C 1.53004 * 109.46014 * 181.38869 * 11 10 9 14 14 F 1.39902 * 109.47213 * 59.99989 * 13 11 10 15 15 F 1.39899 * 109.46868 * 179.97438 * 13 11 10 16 16 F 1.39904 * 109.46800 * 299.99704 * 13 11 10 17 17 C 1.53346 * 109.61010 * 61.37429 * 11 10 9 18 18 H 1.08997 * 109.68637 * 178.74435 * 17 11 10 19 19 N 1.46500 * 109.47317 * 58.54920 * 17 11 10 20 20 C 1.36940 * 120.00067 * 155.38091 * 19 17 11 21 21 H 1.07996 * 120.00028 * 359.97438 * 20 19 17 22 22 C 1.38808 * 119.99971 * 180.02562 * 20 19 17 23 23 N 1.31625 * 120.00183 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00020 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47057 * 89.99847 * 24 22 20 26 26 H 1.48504 * 109.47150 * 209.99761 * 24 22 20 27 27 H 1.48500 * 109.47327 * 329.99902 * 24 22 20 28 28 C 1.46919 * 120.63395 * 180.02562 * 8 6 5 29 29 H 1.08993 * 109.46943 * 299.99771 * 1 2 3 30 30 H 1.08993 * 109.46978 * 60.00194 * 1 2 3 31 31 H 1.09003 * 109.47003 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46567 * 239.99610 * 2 1 3 33 33 H 1.09002 * 109.46546 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47007 * 299.99374 * 3 2 1 35 35 H 1.08990 * 109.47652 * 60.00156 * 3 2 1 36 36 H 1.09000 * 109.46292 * 60.00413 * 5 4 2 37 37 H 1.08993 * 109.47058 * 300.00230 * 5 4 2 38 38 H 1.08994 * 109.58580 * 353.42544 * 9 8 6 39 39 H 1.09002 * 109.58042 * 113.84624 * 9 8 6 40 40 H 1.08994 * 109.49494 * 65.32533 * 10 9 8 41 41 H 1.09007 * 109.49349 * 185.38405 * 10 9 8 42 42 H 0.96996 * 119.99877 * 335.37646 * 19 17 11 43 43 H 0.96999 * 119.99716 * 179.97438 * 23 22 20 44 44 H 1.09002 * 109.58751 * 246.15665 * 28 8 6 45 45 H 1.08996 * 109.58750 * 6.43850 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9886 6 6 2.7014 -2.6832 2.2746 7 8 2.8753 -1.9808 3.2479 8 7 2.9566 -4.0048 2.3431 9 6 2.7503 -4.8687 1.1726 10 6 1.8410 -6.0343 1.5742 11 6 2.4416 -6.7505 2.7859 12 1 3.4401 -7.1100 2.5372 13 6 1.5540 -7.9366 3.1686 14 9 1.4755 -8.8268 2.0922 15 9 2.1032 -8.5918 4.2760 16 9 0.2720 -7.4758 3.4872 17 6 2.5294 -5.7772 3.9676 18 1 2.9363 -6.2921 4.8379 19 7 1.1921 -5.2678 4.2812 20 6 0.9113 -4.8115 5.5414 21 1 1.6755 -4.8276 6.3043 22 6 -0.3560 -4.3294 5.8386 23 7 -1.2877 -4.3103 4.9090 24 14 -0.7393 -3.7076 7.5579 25 1 -0.4392 -2.2554 7.6374 26 1 -2.1763 -3.9332 7.8570 27 1 0.0929 -4.4399 8.5461 28 6 3.4453 -4.6093 3.5898 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 2.9320 -2.2467 0.1987 37 1 1.2538 -2.5433 0.7125 38 1 2.2789 -4.2957 0.3742 39 1 3.7102 -5.2552 0.8301 40 1 0.8525 -5.6531 1.8299 41 1 1.7572 -6.7337 0.7422 42 1 0.5056 -5.2537 3.5961 43 1 -2.1733 -3.9737 5.1169 44 1 4.4620 -4.9747 3.4448 45 1 3.4347 -3.8646 4.3856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734590303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:36 Heat of formation + Delta-G solvation = -216.287231 kcal Electronic energy + Delta-G solvation = -32156.235796 eV Core-core repulsion = 27373.516263 eV Total energy + Delta-G solvation = -4782.719533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.55684 -47.13765 -46.86738 -39.96621 -38.33330 -37.12941 -34.25976 -32.78815 -32.70898 -31.24339 -29.00463 -28.14058 -27.25141 -26.08147 -23.84583 -23.33983 -22.35331 -21.34780 -20.25019 -18.80709 -17.84548 -17.73764 -17.47162 -17.15311 -16.78734 -16.36603 -15.85685 -15.38041 -14.84303 -14.56652 -14.36562 -14.28006 -13.99088 -13.71333 -13.52183 -13.46943 -13.37536 -13.09423 -13.05159 -12.94900 -12.87817 -12.75399 -12.51903 -12.32378 -12.22545 -12.18480 -11.88030 -11.57353 -11.44111 -11.08346 -10.85271 -10.82913 -10.74883 -10.67215 -10.37964 -9.99386 -9.65330 -9.61002 -9.26991 -9.00315 -8.27016 -6.94092 -5.72239 -3.01616 2.93567 3.08039 3.27274 3.50542 3.55496 3.56315 3.92966 4.23133 4.31746 4.51917 4.65080 4.69866 4.87123 4.90333 4.98942 5.09793 5.11599 5.13405 5.22675 5.33784 5.35538 5.38546 5.49025 5.52921 5.53811 5.64587 5.72534 5.76411 5.78603 5.82600 5.97577 6.05004 6.11394 6.22195 6.26324 6.44331 6.56164 6.89426 7.20994 7.73896 7.75980 8.43596 8.64864 9.57434 10.06228 10.41273 11.49932 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009444 B = 0.004852 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.139396 B = 5769.930153 C = 7569.616957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 C -0.148 4.148 4 O -0.355 6.355 5 C 0.048 3.952 6 C 0.520 3.480 7 O -0.508 6.508 8 N -0.600 5.600 9 C 0.116 3.884 10 C -0.136 4.136 11 C -0.139 4.139 12 H 0.108 0.892 13 C 0.456 3.544 14 F -0.199 7.199 15 F -0.187 7.187 16 F -0.154 7.154 17 C 0.164 3.836 18 H 0.073 0.927 19 N -0.709 5.709 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.003 4.003 23 N -0.927 5.927 24 Si 0.905 3.095 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.282 1.282 28 C 0.098 3.902 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.388 0.612 43 H 0.254 0.746 44 H 0.053 0.947 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -0.821 -15.221 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.022 3.978 3 C -0.206 4.206 4 O -0.273 6.273 5 C -0.032 4.032 6 C 0.307 3.693 7 O -0.382 6.382 8 N -0.336 5.336 9 C -0.007 4.007 10 C -0.174 4.174 11 C -0.159 4.159 12 H 0.126 0.874 13 C 0.401 3.599 14 F -0.181 7.181 15 F -0.169 7.169 16 F -0.135 7.135 17 C 0.052 3.948 18 H 0.091 0.909 19 N -0.352 5.352 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.200 4.200 23 N -0.575 5.575 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.208 1.208 28 C -0.028 4.028 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.225 0.775 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.908 -0.289 -14.304 16.853 hybrid contribution -0.840 -0.151 0.432 0.956 sum 8.068 -0.440 -13.872 16.054 Atomic orbital electron populations 1.22316 0.95782 1.02757 1.02610 1.22133 0.93936 0.93867 0.87891 1.21843 1.01697 0.94505 1.02524 1.88093 1.86416 1.17905 1.34926 1.22271 1.00805 0.83983 0.96175 1.19976 0.78039 0.81950 0.89369 1.90725 1.50232 1.59971 1.37246 1.47766 1.66795 1.06440 1.12603 1.21591 0.99170 0.91815 0.88166 1.21960 1.01347 0.97701 0.96404 1.22803 0.99144 0.93883 1.00096 0.87410 1.20465 0.81479 0.83809 0.74102 1.93115 1.96679 1.71757 1.56548 1.93139 1.85635 1.83103 1.55010 1.93319 1.39738 1.87947 1.92541 1.20656 0.89918 0.91313 0.92948 0.90883 1.42449 1.06373 1.74463 1.11915 1.19109 0.95793 1.34280 0.87914 0.91194 1.24662 0.96190 1.01500 0.97607 1.69651 1.03456 1.52051 1.32311 0.86231 0.77088 0.78854 0.84230 1.21655 1.21906 1.20759 1.22450 0.95407 0.98181 0.86719 0.91425 0.91813 0.92233 0.92396 0.92060 0.91362 0.91539 0.91069 0.90435 0.89859 0.91133 0.89088 0.89969 0.77547 0.93636 0.92850 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.53 37.16 0.35 -1.67 16 2 C 0.08 0.93 3.34 -26.73 -0.09 0.84 16 3 C -0.15 -1.51 9.56 37.16 0.36 -1.16 16 4 O -0.36 -5.79 9.52 -55.14 -0.52 -6.31 16 5 C 0.05 0.68 4.57 36.00 0.16 0.85 16 6 C 0.52 9.62 7.78 -10.98 -0.09 9.54 16 7 O -0.51 -12.07 15.91 -14.36 -0.23 -12.29 16 8 N -0.60 -9.49 2.89 -172.80 -0.50 -9.99 16 9 C 0.12 1.30 6.34 -3.71 -0.02 1.28 16 10 C -0.14 -1.74 4.95 -26.62 -0.13 -1.88 16 11 C -0.14 -1.99 2.01 -90.42 -0.18 -2.17 16 12 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 13 C 0.46 7.58 2.69 37.16 0.10 7.68 16 14 F -0.20 -2.99 16.77 2.25 0.04 -2.95 16 15 F -0.19 -3.27 16.78 2.25 0.04 -3.23 16 16 F -0.15 -3.22 14.40 2.25 0.03 -3.18 16 17 C 0.16 2.97 2.47 -67.67 -0.17 2.80 16 18 H 0.07 1.35 7.72 -51.93 -0.40 0.95 16 19 N -0.71 -16.78 3.70 -53.18 -0.20 -16.98 16 20 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 23 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 24 Si 0.90 23.26 29.55 -169.99 -5.02 18.24 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 C 0.10 1.66 6.03 -3.73 -0.02 1.63 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 32 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 37 H 0.08 1.03 7.42 -51.93 -0.39 0.64 16 38 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.48 6.12 -51.93 -0.32 1.16 16 41 H 0.08 0.84 7.77 -51.92 -0.40 0.44 16 42 H 0.39 9.77 4.94 -40.82 -0.20 9.57 16 43 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 2.12 7.00 -51.93 -0.36 1.75 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -35.18 370.32 -6.56 -41.75 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.53 Total: 5.92 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 0.03 Total: 10.80 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.03 Total: -54.32 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.75 Total: -18.61 kcal Atomic # 9 Polarization: -9.47 SS G_CDS: 0.11 Total: -9.36 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.18 -6.56 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734590303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.539 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds