Wall clock time and date at job start Tue Mar 31 2020 21:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46791 * 2 1 4 4 O 1.42896 * 109.47110 * 120.00124 * 2 1 3 5 5 C 1.42902 * 114.00291 * 89.99529 * 4 2 1 6 6 C 1.50698 * 109.47064 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00087 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00162 * 180.02562 * 6 5 4 9 9 C 1.46933 * 120.62602 * 359.97327 * 8 6 5 10 10 C 1.53188 * 108.77495 * 233.63137 * 9 8 6 11 11 C 1.53034 * 109.31404 * 305.36890 * 10 9 8 12 12 H 1.09000 * 109.46169 * 301.34220 * 11 10 9 13 13 C 1.53004 * 109.46014 * 181.38869 * 11 10 9 14 14 F 1.39902 * 109.47213 * 59.99989 * 13 11 10 15 15 F 1.39899 * 109.46868 * 179.97438 * 13 11 10 16 16 F 1.39904 * 109.46800 * 299.99704 * 13 11 10 17 17 C 1.53346 * 109.61010 * 61.37429 * 11 10 9 18 18 H 1.08997 * 109.68637 * 178.74435 * 17 11 10 19 19 N 1.46500 * 109.47317 * 58.54920 * 17 11 10 20 20 C 1.36940 * 120.00067 * 155.38091 * 19 17 11 21 21 H 1.07996 * 120.00028 * 359.97438 * 20 19 17 22 22 C 1.38808 * 119.99971 * 180.02562 * 20 19 17 23 23 N 1.31625 * 120.00183 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00020 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47057 * 89.99847 * 24 22 20 26 26 H 1.48504 * 109.47150 * 209.99761 * 24 22 20 27 27 H 1.48500 * 109.47327 * 329.99902 * 24 22 20 28 28 C 1.46919 * 120.63395 * 180.02562 * 8 6 5 29 29 H 1.08993 * 109.46943 * 299.99771 * 1 2 3 30 30 H 1.08993 * 109.46978 * 60.00194 * 1 2 3 31 31 H 1.09003 * 109.47003 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46567 * 239.99610 * 2 1 3 33 33 H 1.09002 * 109.46546 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47007 * 299.99374 * 3 2 1 35 35 H 1.08990 * 109.47652 * 60.00156 * 3 2 1 36 36 H 1.09000 * 109.46292 * 60.00413 * 5 4 2 37 37 H 1.08993 * 109.47058 * 300.00230 * 5 4 2 38 38 H 1.08994 * 109.58580 * 353.42544 * 9 8 6 39 39 H 1.09002 * 109.58042 * 113.84624 * 9 8 6 40 40 H 1.08994 * 109.49494 * 65.32533 * 10 9 8 41 41 H 1.09007 * 109.49349 * 185.38405 * 10 9 8 42 42 H 0.96996 * 119.99877 * 335.37646 * 19 17 11 43 43 H 0.96999 * 119.99716 * 179.97438 * 23 22 20 44 44 H 1.09002 * 109.58751 * 246.15665 * 28 8 6 45 45 H 1.08996 * 109.58750 * 6.43850 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2001 -2.0782 0.9886 6 6 2.7014 -2.6832 2.2746 7 8 2.8753 -1.9808 3.2479 8 7 2.9566 -4.0048 2.3431 9 6 2.7503 -4.8687 1.1726 10 6 1.8410 -6.0343 1.5742 11 6 2.4416 -6.7505 2.7859 12 1 3.4401 -7.1100 2.5372 13 6 1.5540 -7.9366 3.1686 14 9 1.4755 -8.8268 2.0922 15 9 2.1032 -8.5918 4.2760 16 9 0.2720 -7.4758 3.4872 17 6 2.5294 -5.7772 3.9676 18 1 2.9363 -6.2921 4.8379 19 7 1.1921 -5.2678 4.2812 20 6 0.9113 -4.8115 5.5414 21 1 1.6755 -4.8276 6.3043 22 6 -0.3560 -4.3294 5.8386 23 7 -1.2877 -4.3103 4.9090 24 14 -0.7393 -3.7076 7.5579 25 1 -0.4392 -2.2554 7.6374 26 1 -2.1763 -3.9332 7.8570 27 1 0.0929 -4.4399 8.5461 28 6 3.4453 -4.6093 3.5898 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 2.9320 -2.2467 0.1987 37 1 1.2538 -2.5433 0.7125 38 1 2.2789 -4.2957 0.3742 39 1 3.7102 -5.2552 0.8301 40 1 0.8525 -5.6531 1.8299 41 1 1.7572 -6.7337 0.7422 42 1 0.5056 -5.2537 3.5961 43 1 -2.1733 -3.9737 5.1169 44 1 4.4620 -4.9747 3.4448 45 1 3.4347 -3.8646 4.3856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734590303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:35 Heat of formation + Delta-G solvation = -239.908771 kcal Electronic energy + Delta-G solvation = -32157.260103 eV Core-core repulsion = 27373.516263 eV Total energy + Delta-G solvation = -4783.743840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.90403 -48.43534 -48.31891 -41.25221 -39.46570 -38.47013 -35.91973 -34.31909 -33.68607 -32.81920 -30.64507 -29.33281 -28.12015 -27.39597 -25.77549 -24.47494 -23.74310 -22.24441 -21.58550 -20.16878 -19.30677 -19.07662 -19.06235 -18.58133 -17.95705 -17.60128 -17.02134 -16.82672 -16.31532 -16.02412 -15.70955 -15.56293 -15.35746 -15.10687 -14.97292 -14.80287 -14.65900 -14.51547 -14.45766 -14.31354 -14.10326 -13.88585 -13.69857 -13.54565 -13.43459 -13.09525 -13.04318 -12.89136 -12.87634 -12.74133 -12.34222 -12.31490 -12.10276 -11.98346 -11.69928 -11.62832 -11.54787 -11.06877 -10.64452 -10.60435 -9.66530 -8.88803 -7.93021 -5.17769 1.40218 1.44225 1.49180 1.65554 1.86872 2.00699 2.54091 2.92424 2.98199 3.09934 3.25863 3.41841 3.62241 3.78896 3.95326 3.96710 4.01365 4.10417 4.11443 4.13713 4.28817 4.30092 4.33678 4.39637 4.61923 4.68675 4.73098 4.75315 4.80145 4.83172 4.87366 4.90059 4.95126 5.11661 5.27222 5.29283 5.33848 5.50478 5.65309 6.22499 6.28363 6.53806 7.32670 7.38130 8.10446 8.33001 9.29780 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009444 B = 0.004852 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.139396 B = 5769.930153 C = 7569.616957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.072 3.928 3 C -0.147 4.147 4 O -0.398 6.398 5 C 0.052 3.948 6 C 0.504 3.496 7 O -0.580 6.580 8 N -0.597 5.597 9 C 0.112 3.888 10 C -0.133 4.133 11 C -0.126 4.126 12 H 0.158 0.842 13 C 0.451 3.549 14 F -0.186 7.186 15 F -0.195 7.195 16 F -0.186 7.186 17 C 0.156 3.844 18 H 0.067 0.933 19 N -0.718 5.718 20 C -0.229 4.229 21 H 0.068 0.932 22 C -0.068 4.068 23 N -0.960 5.960 24 Si 0.956 3.044 25 H -0.300 1.300 26 H -0.294 1.294 27 H -0.269 1.269 28 C 0.104 3.896 29 H 0.039 0.961 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.050 0.950 41 H 0.120 0.880 42 H 0.380 0.620 43 H 0.246 0.754 44 H 0.101 0.899 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.967 -2.009 -18.439 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.015 3.985 3 C -0.204 4.204 4 O -0.318 6.318 5 C -0.027 4.027 6 C 0.293 3.707 7 O -0.459 6.459 8 N -0.331 5.331 9 C -0.010 4.010 10 C -0.171 4.171 11 C -0.146 4.146 12 H 0.176 0.824 13 C 0.397 3.603 14 F -0.168 7.168 15 F -0.176 7.176 16 F -0.167 7.167 17 C 0.046 3.954 18 H 0.085 0.915 19 N -0.360 5.360 20 C -0.361 4.361 21 H 0.086 0.914 22 C -0.260 4.260 23 N -0.611 5.611 24 Si 0.787 3.213 25 H -0.228 1.228 26 H -0.221 1.221 27 H -0.194 1.194 28 C -0.022 4.022 29 H 0.058 0.942 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.138 0.862 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.068 0.932 41 H 0.138 0.862 42 H 0.215 0.785 43 H 0.055 0.945 44 H 0.118 0.882 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.074 -1.544 -17.559 20.817 hybrid contribution -1.403 0.121 1.385 1.975 sum 9.671 -1.423 -16.174 18.898 Atomic orbital electron populations 1.22331 0.96052 1.02289 1.02723 1.22440 0.93802 0.94499 0.87734 1.21879 1.01773 0.93873 1.02917 1.88064 1.86932 1.19004 1.37787 1.22367 1.02308 0.83215 0.94778 1.20927 0.77083 0.82563 0.90137 1.90686 1.53470 1.61877 1.39891 1.47931 1.65403 1.06332 1.13447 1.22054 1.01495 0.90703 0.86718 1.21996 0.99487 0.98891 0.96736 1.22841 1.01268 0.91832 0.98696 0.82430 1.20859 0.80563 0.84751 0.74146 1.93135 1.96573 1.71408 1.55640 1.93124 1.85510 1.83353 1.55646 1.93264 1.42161 1.88410 1.92887 1.20886 0.87312 0.92419 0.94814 0.91492 1.42529 1.08622 1.74558 1.10322 1.19431 0.95256 1.31890 0.89494 0.91395 1.25311 0.96728 1.03452 1.00556 1.69780 1.03392 1.54234 1.33663 0.85392 0.76800 0.77648 0.81490 1.22837 1.22075 1.19355 1.22200 0.97419 0.96051 0.86523 0.94158 0.88825 0.92973 0.88975 0.91949 0.88368 0.93721 0.86162 0.89483 0.87204 0.86311 0.93154 0.86214 0.78514 0.94517 0.88163 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.86 9.53 71.98 0.69 -3.18 16 2 C 0.07 1.56 3.34 30.60 0.10 1.66 16 3 C -0.15 -2.80 9.56 71.98 0.69 -2.11 16 4 O -0.40 -12.83 9.52 -129.94 -1.24 -14.07 16 5 C 0.05 1.40 4.57 71.24 0.33 1.72 16 6 C 0.50 18.46 7.78 87.66 0.68 19.15 16 7 O -0.58 -28.81 15.91 16.00 0.25 -28.55 16 8 N -0.60 -17.60 2.89 -818.99 -2.37 -19.97 16 9 C 0.11 1.94 6.34 86.36 0.55 2.49 16 10 C -0.13 -2.92 4.95 30.67 0.15 -2.77 16 11 C -0.13 -3.21 2.01 -10.66 -0.02 -3.23 16 12 H 0.16 2.52 8.14 -2.39 -0.02 2.50 16 13 C 0.45 14.14 2.69 71.98 0.19 14.34 16 14 F -0.19 -5.01 16.77 44.97 0.75 -4.26 16 15 F -0.19 -6.51 16.78 44.97 0.75 -5.75 16 16 F -0.19 -7.79 14.40 44.97 0.65 -7.14 16 17 C 0.16 5.48 2.47 45.16 0.11 5.59 16 18 H 0.07 2.43 7.72 -2.39 -0.02 2.41 16 19 N -0.72 -34.67 3.70 -322.15 -1.19 -35.86 16 20 C -0.23 -12.99 9.93 84.03 0.83 -12.15 16 21 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 22 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 23 N -0.96 -60.55 13.06 21.65 0.28 -60.26 16 24 Si 0.96 49.61 29.55 68.60 2.03 51.63 16 25 H -0.30 -15.94 7.11 99.48 0.71 -15.24 16 26 H -0.29 -15.18 7.11 99.48 0.71 -14.47 16 27 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 28 C 0.10 3.38 6.03 86.35 0.52 3.90 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.19 7.87 -2.39 -0.02 1.17 16 32 H 0.09 1.35 7.79 -2.39 -0.02 1.33 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.12 1.95 7.89 -2.39 -0.02 1.93 16 37 H 0.09 2.12 7.42 -2.39 -0.02 2.10 16 38 H 0.11 1.39 5.93 -2.39 -0.01 1.38 16 39 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 1.57 6.12 -2.39 -0.01 1.56 16 41 H 0.12 1.80 7.77 -2.38 -0.02 1.78 16 42 H 0.38 19.66 4.94 -92.71 -0.46 19.21 16 43 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.05 2.27 7.00 -2.39 -0.02 2.26 16 Total: -1.00 -85.22 370.32 5.77 -79.45 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.56 Total: 22.99 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 5.29 Total: 21.80 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -3.28 Total: -116.09 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.98 Total: -42.62 kcal Atomic # 9 Polarization: -19.32 SS G_CDS: 2.16 Total: -17.16 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.03 Total: 51.63 kcal Total: -85.22 5.77 -79.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734590303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.456 kcal (2) G-P(sol) polarization free energy of solvation -85.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds