Wall clock time and date at job start Tue Mar 31 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 6 6 H 1.09004 * 111.00348 * 82.60834 * 5 4 2 7 7 N 1.46894 * 111.00860 * 206.42364 * 5 4 2 8 8 C 1.46901 * 111.00172 * 205.00156 * 7 5 4 9 9 C 1.52993 * 109.47202 * 179.97438 * 8 7 5 10 10 N 1.46500 * 109.47104 * 179.97438 * 9 8 7 11 11 C 1.34949 * 126.03614 * 124.99725 * 10 9 8 12 12 C 1.35317 * 107.75030 * 179.97438 * 11 10 9 13 13 C 1.39878 * 107.91433 * 0.02562 * 12 11 10 14 14 N 1.30836 * 108.20432 * 359.73556 * 13 12 11 15 15 C 1.54907 * 101.58028 * 324.49859 * 5 4 2 16 16 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 17 17 C 1.34780 * 125.64274 * 300.45579 * 16 2 1 18 18 O 1.21270 * 120.00380 * 0.02562 * 17 16 2 19 19 C 1.50708 * 119.99384 * 179.97438 * 17 16 2 20 20 S 1.81007 * 109.46762 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99397 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00832 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99393 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99997 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99781 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47333 * 89.99848 * 25 23 21 27 27 H 1.48496 * 109.47262 * 210.00196 * 25 23 21 28 28 H 1.48508 * 109.47299 * 330.00221 * 25 23 21 29 29 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 30 30 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 31 31 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 32 32 H 1.09000 * 110.71809 * 21.13997 * 4 2 1 33 33 H 1.09002 * 110.72272 * 144.23157 * 4 2 1 34 34 H 1.00897 * 111.00237 * 81.04153 * 7 5 4 35 35 H 1.09002 * 109.46992 * 300.00088 * 8 7 5 36 36 H 1.08996 * 109.47438 * 59.99580 * 8 7 5 37 37 H 1.08999 * 109.47451 * 299.99489 * 9 8 7 38 38 H 1.09007 * 109.47458 * 59.99862 * 9 8 7 39 39 H 1.08004 * 126.13075 * 359.96200 * 11 10 9 40 40 H 1.07998 * 126.04250 * 179.97438 * 12 11 10 41 41 H 1.08003 * 125.89261 * 179.97438 * 13 12 11 42 42 H 1.09001 * 110.36979 * 155.84714 * 15 5 4 43 43 H 1.08999 * 110.36689 * 278.06189 * 15 5 4 44 44 H 1.08999 * 109.46840 * 300.00108 * 19 17 16 45 45 H 1.08993 * 109.46953 * 60.00231 * 19 17 16 46 46 H 0.97007 * 119.99943 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 2.3519 -2.1685 -0.6954 6 1 1.4454 -2.7729 -0.6649 7 7 3.3966 -2.8309 -1.4876 8 6 3.2809 -4.2924 -1.3944 9 6 4.3828 -4.9456 -2.2310 10 7 4.2678 -6.4031 -2.1375 11 6 4.1593 -7.2591 -3.1751 12 6 4.0769 -8.5116 -2.6697 13 6 4.1366 -8.4178 -1.2754 14 7 4.2563 -7.1548 -0.9555 15 6 2.8568 -1.8508 0.7342 16 7 2.0300 -0.7157 1.1829 17 6 1.7750 -0.3880 2.4652 18 8 1.0780 0.5714 2.7188 19 6 2.3554 -1.2146 3.5838 20 16 1.8349 -0.5265 5.1750 21 6 2.6315 -1.6534 6.2706 22 1 3.2235 -2.4650 5.8742 23 6 2.4988 -1.4973 7.6435 24 7 1.7777 -0.5079 8.1268 25 14 3.3438 -2.6915 8.8051 26 1 4.7029 -2.1887 9.1295 27 1 2.5497 -2.8127 10.0541 28 1 3.4505 -4.0225 8.1552 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.4980 -0.8990 31 1 -0.3634 0.5296 0.8808 32 1 1.2919 -0.7862 -2.0211 33 1 2.9640 -0.2790 -1.6204 34 1 4.3148 -2.5221 -1.2056 35 1 3.3841 -4.5993 -0.3536 36 1 2.3066 -4.6045 -1.7702 37 1 4.2791 -4.6387 -3.2717 38 1 5.3574 -4.6336 -1.8555 39 1 4.1412 -6.9923 -4.2215 40 1 3.9811 -9.4226 -3.2418 41 1 4.0952 -9.2454 -0.5827 42 1 2.7088 -2.7100 1.3885 43 1 3.9096 -1.5695 0.7110 44 1 2.0000 -2.2416 3.4987 45 1 3.4433 -1.2001 3.5196 46 1 1.6848 -0.3991 9.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755671146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:35 Heat of formation + Delta-G solvation = 50.991025 kcal Electronic energy + Delta-G solvation = -26144.158908 eV Core-core repulsion = 22389.931792 eV Total energy + Delta-G solvation = -3754.227116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43047 -40.20060 -37.91813 -36.08043 -33.47978 -32.43531 -32.19408 -30.65074 -29.94936 -28.74415 -27.33047 -25.87753 -25.48514 -23.48374 -22.50425 -21.40643 -21.15876 -20.66555 -19.01629 -17.77126 -17.57298 -16.79910 -16.44733 -16.07394 -15.70017 -15.05144 -14.82923 -14.80484 -14.49999 -14.25676 -14.02522 -13.86993 -13.58504 -13.31827 -13.24339 -13.05615 -13.01183 -12.69996 -12.53108 -12.39265 -12.20854 -11.89116 -11.79133 -11.54277 -11.10748 -11.06181 -11.01820 -10.94822 -10.76908 -10.76243 -9.82351 -9.76652 -9.41866 -9.07064 -8.95659 -8.94267 -8.53660 -8.24683 -6.51150 -6.22160 -3.92914 1.56270 2.09971 2.54672 2.85470 3.04519 3.22202 3.24861 3.29953 3.50531 3.71157 4.14645 4.19566 4.30444 4.32546 4.44620 4.49439 4.69358 4.72977 4.80921 4.96038 5.02707 5.08277 5.12880 5.13567 5.27656 5.33684 5.37477 5.42467 5.47020 5.52182 5.59739 5.61949 5.67855 5.68662 5.76282 5.86994 6.05644 6.11527 6.28359 6.31370 6.43212 6.54961 6.63941 6.81193 7.38166 7.59022 7.65281 8.34739 8.55213 9.23143 10.85257 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.002652 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.622582 B =10554.125610 C =13455.629291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.113 4.113 5 C 0.079 3.921 6 H 0.095 0.905 7 N -0.673 5.673 8 C 0.045 3.955 9 C 0.136 3.864 10 N -0.373 5.373 11 C 0.054 3.946 12 C -0.277 4.277 13 C 0.044 3.956 14 N -0.293 5.293 15 C 0.075 3.925 16 N -0.620 5.620 17 C 0.550 3.450 18 O -0.511 6.511 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.347 0.653 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.173 0.827 40 H 0.147 0.853 41 H 0.183 0.817 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 -10.724 -27.695 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.032 4.032 6 H 0.113 0.887 7 N -0.304 5.304 8 C -0.085 4.085 9 C 0.014 3.986 10 N -0.156 5.156 11 C -0.092 4.092 12 C -0.306 4.306 13 C -0.142 4.142 14 N -0.115 5.115 15 C -0.050 4.050 16 N -0.358 5.358 17 C 0.338 3.662 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.166 0.834 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.190 0.810 40 H 0.164 0.836 41 H 0.200 0.800 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.584 -8.137 -26.717 28.157 hybrid contribution 1.690 -2.753 0.670 3.300 sum 5.275 -10.890 -26.047 28.721 Atomic orbital electron populations 1.22160 0.94727 1.02254 1.03037 1.21528 0.94879 0.96430 0.84102 0.90693 1.22700 1.02130 0.93863 0.96476 1.22756 0.95059 0.95730 0.89687 0.88713 1.60480 1.07404 1.04671 1.57832 1.22222 0.99011 0.87596 0.99646 1.21618 1.00143 0.74080 1.02752 1.48678 1.56287 1.06554 1.04035 1.22593 1.01669 0.90431 0.94510 1.21545 1.16832 0.97638 0.94590 1.23952 0.99649 0.94702 0.95908 1.77420 1.23874 1.04245 1.05916 1.22986 0.95307 0.90206 0.96545 1.48478 1.51846 1.30440 1.04988 1.20010 0.80057 0.84760 0.81365 1.90690 1.37247 1.28118 1.82435 1.23520 1.03660 1.02464 1.00145 1.85381 1.67192 1.40173 0.90518 1.22853 1.36546 1.15826 0.93104 0.90989 1.24992 0.95233 0.96007 0.97338 1.70016 1.37311 1.29322 1.13606 0.86168 0.79211 0.80531 0.79604 1.20251 1.20712 1.19670 0.92737 0.91969 0.90671 0.89666 0.90107 0.83443 0.92957 0.90241 0.87678 0.89737 0.80959 0.83556 0.80031 0.90516 0.91357 0.89496 0.89480 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.05 37.16 0.34 -1.65 16 2 C 0.13 1.59 3.49 -66.96 -0.23 1.36 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.11 -0.93 6.19 -24.90 -0.15 -1.08 16 5 C 0.08 0.65 3.38 -65.57 -0.22 0.43 16 6 H 0.09 0.85 7.83 -51.93 -0.41 0.44 16 7 N -0.67 -4.33 6.41 -104.47 -0.67 -5.00 16 8 C 0.05 0.32 5.74 -3.83 -0.02 0.29 16 9 C 0.14 0.80 6.77 -4.05 -0.03 0.77 16 10 N -0.37 -3.12 3.68 -61.36 -0.23 -3.35 16 11 C 0.05 0.37 11.45 -17.22 -0.20 0.17 16 12 C -0.28 -2.02 10.80 -40.01 -0.43 -2.46 16 13 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 14 N -0.29 -3.20 12.42 30.63 0.38 -2.82 16 15 C 0.08 0.81 6.29 -2.53 -0.02 0.80 16 16 N -0.62 -8.94 3.08 -163.02 -0.50 -9.44 16 17 C 0.55 10.72 7.65 -10.98 -0.08 10.63 16 18 O -0.51 -11.80 14.77 5.57 0.08 -11.72 16 19 C -0.15 -3.09 5.16 36.01 0.19 -2.91 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.45 9.50 30.94 0.29 -15.16 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 25 Si 0.92 21.67 29.55 -169.99 -5.02 16.64 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.17 6.77 -51.93 -0.35 0.82 16 32 H 0.08 0.62 7.83 -51.93 -0.41 0.21 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.35 1.93 8.19 -39.29 -0.32 1.61 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.11 0.40 8.07 -51.93 -0.42 -0.02 16 38 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.17 0.55 8.06 -52.48 -0.42 0.13 16 40 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.18 1.14 8.06 -52.48 -0.42 0.71 16 42 H 0.08 0.88 7.48 -51.93 -0.39 0.49 16 43 H 0.07 0.67 7.75 -51.93 -0.40 0.26 16 44 H 0.09 1.72 7.85 -51.92 -0.41 1.31 16 45 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -36.33 395.14 -9.65 -45.98 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.30 Total: -0.16 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -0.88 Total: -6.59 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.28 Total: -46.26 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.33 -9.65 -45.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755671146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.974 kcal (2) G-P(sol) polarization free energy of solvation -36.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds