Wall clock time and date at job start Tue Mar 31 2020 21:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87477 * 2 1 4 4 C 1.54318 * 109.88589 * 238.98305 * 2 1 3 5 5 C 1.55154 * 102.94706 * 262.77585 * 4 2 1 6 6 H 1.09004 * 111.00348 * 82.60834 * 5 4 2 7 7 N 1.46894 * 111.00860 * 206.42364 * 5 4 2 8 8 C 1.46901 * 111.00172 * 205.00156 * 7 5 4 9 9 C 1.52993 * 109.47202 * 179.97438 * 8 7 5 10 10 N 1.46500 * 109.47104 * 179.97438 * 9 8 7 11 11 C 1.34949 * 126.03614 * 124.99725 * 10 9 8 12 12 C 1.35317 * 107.75030 * 179.97438 * 11 10 9 13 13 C 1.39878 * 107.91433 * 0.02562 * 12 11 10 14 14 N 1.30836 * 108.20432 * 359.73556 * 13 12 11 15 15 C 1.54907 * 101.58028 * 324.49859 * 5 4 2 16 16 N 1.47026 * 109.88309 * 121.17632 * 2 1 3 17 17 C 1.34780 * 125.64274 * 300.45579 * 16 2 1 18 18 O 1.21270 * 120.00380 * 0.02562 * 17 16 2 19 19 C 1.50708 * 119.99384 * 179.97438 * 17 16 2 20 20 S 1.81007 * 109.46762 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99397 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00832 * 0.02562 * 21 20 19 23 23 C 1.38809 * 119.99393 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99997 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99781 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47333 * 89.99848 * 25 23 21 27 27 H 1.48496 * 109.47262 * 210.00196 * 25 23 21 28 28 H 1.48508 * 109.47299 * 330.00221 * 25 23 21 29 29 H 1.09002 * 109.47153 * 181.01454 * 1 2 3 30 30 H 1.09001 * 109.46832 * 61.01645 * 1 2 3 31 31 H 1.09004 * 109.47261 * 301.01627 * 1 2 3 32 32 H 1.09000 * 110.71809 * 21.13997 * 4 2 1 33 33 H 1.09002 * 110.72272 * 144.23157 * 4 2 1 34 34 H 1.00897 * 111.00237 * 81.04153 * 7 5 4 35 35 H 1.09002 * 109.46992 * 300.00088 * 8 7 5 36 36 H 1.08996 * 109.47438 * 59.99580 * 8 7 5 37 37 H 1.08999 * 109.47451 * 299.99489 * 9 8 7 38 38 H 1.09007 * 109.47458 * 59.99862 * 9 8 7 39 39 H 1.08004 * 126.13075 * 359.96200 * 11 10 9 40 40 H 1.07998 * 126.04250 * 179.97438 * 12 11 10 41 41 H 1.08003 * 125.89261 * 179.97438 * 13 12 11 42 42 H 1.09001 * 110.36979 * 155.84714 * 15 5 4 43 43 H 1.08999 * 110.36689 * 278.06189 * 15 5 4 44 44 H 1.08999 * 109.46840 * 300.00108 * 19 17 16 45 45 H 1.08993 * 109.46953 * 60.00231 * 19 17 16 46 46 H 0.97007 * 119.99943 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 2.3519 -2.1685 -0.6954 6 1 1.4454 -2.7729 -0.6649 7 7 3.3966 -2.8309 -1.4876 8 6 3.2809 -4.2924 -1.3944 9 6 4.3828 -4.9456 -2.2310 10 7 4.2678 -6.4031 -2.1375 11 6 4.1593 -7.2591 -3.1751 12 6 4.0769 -8.5116 -2.6697 13 6 4.1366 -8.4178 -1.2754 14 7 4.2563 -7.1548 -0.9555 15 6 2.8568 -1.8508 0.7342 16 7 2.0300 -0.7157 1.1829 17 6 1.7750 -0.3880 2.4652 18 8 1.0780 0.5714 2.7188 19 6 2.3554 -1.2146 3.5838 20 16 1.8349 -0.5265 5.1750 21 6 2.6315 -1.6534 6.2706 22 1 3.2235 -2.4650 5.8742 23 6 2.4988 -1.4973 7.6435 24 7 1.7777 -0.5079 8.1268 25 14 3.3438 -2.6915 8.8051 26 1 4.7029 -2.1887 9.1295 27 1 2.5497 -2.8127 10.0541 28 1 3.4505 -4.0225 8.1552 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.4980 -0.8990 31 1 -0.3634 0.5296 0.8808 32 1 1.2919 -0.7862 -2.0211 33 1 2.9640 -0.2790 -1.6204 34 1 4.3148 -2.5221 -1.2056 35 1 3.3841 -4.5993 -0.3536 36 1 2.3066 -4.6045 -1.7702 37 1 4.2791 -4.6387 -3.2717 38 1 5.3574 -4.6336 -1.8555 39 1 4.1412 -6.9923 -4.2215 40 1 3.9811 -9.4226 -3.2418 41 1 4.0952 -9.2454 -0.5827 42 1 2.7088 -2.7100 1.3885 43 1 3.9096 -1.5695 0.7110 44 1 2.0000 -2.2416 3.4987 45 1 3.4433 -1.2001 3.5196 46 1 1.6848 -0.3991 9.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755671146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:35 Heat of formation + Delta-G solvation = 25.298924 kcal Electronic energy + Delta-G solvation = -26145.273001 eV Core-core repulsion = 22389.931792 eV Total energy + Delta-G solvation = -3755.341209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97589 -41.35659 -39.09688 -36.88688 -34.63599 -34.14735 -33.39461 -31.30271 -30.65176 -30.26694 -27.97051 -27.70574 -26.80224 -24.17220 -23.44461 -21.97602 -21.89528 -21.32203 -20.39333 -19.60236 -18.28393 -17.95221 -17.38831 -17.03530 -16.92438 -16.43721 -16.35774 -15.94809 -15.71402 -15.21091 -14.84230 -14.71845 -14.60688 -14.42204 -14.27686 -14.03097 -13.97936 -13.76778 -13.59405 -13.22142 -13.20009 -13.08157 -12.98297 -12.92103 -12.63827 -12.59663 -12.27588 -11.92253 -11.77654 -11.62041 -11.52465 -11.18647 -10.94532 -10.36139 -10.35193 -9.82752 -9.55600 -9.48486 -8.73327 -8.39223 -6.18348 1.02305 1.18648 1.39041 1.40283 1.50810 1.52379 1.62322 1.98618 2.00875 2.22708 2.94713 2.95345 3.21653 3.44468 3.51140 3.76352 3.83600 3.89783 4.01456 4.08221 4.10577 4.15684 4.19513 4.24709 4.34142 4.37891 4.39081 4.51874 4.63344 4.66724 4.69079 4.80978 4.88986 4.93941 4.96441 5.04638 5.11507 5.19041 5.28947 5.36447 5.47632 5.74042 5.81539 6.14838 6.17640 6.28676 6.34587 6.80690 7.01649 7.07641 8.70115 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.002652 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.622582 B =10554.125610 C =13455.629291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 H 0.068 0.932 4 C -0.096 4.096 5 C 0.091 3.909 6 H 0.091 0.909 7 N -0.656 5.656 8 C 0.054 3.946 9 C 0.135 3.865 10 N -0.380 5.380 11 C 0.058 3.942 12 C -0.290 4.290 13 C 0.030 3.970 14 N -0.344 5.344 15 C 0.066 3.934 16 N -0.610 5.610 17 C 0.547 3.453 18 O -0.558 6.558 19 C -0.121 4.121 20 S -0.145 6.145 21 C -0.548 4.548 22 H 0.079 0.921 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.260 1.260 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.033 0.967 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.356 0.644 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.210 0.790 40 H 0.166 0.834 41 H 0.195 0.805 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.527 -12.432 -30.690 33.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.087 0.913 4 C -0.134 4.134 5 C -0.021 4.021 6 H 0.109 0.891 7 N -0.287 5.287 8 C -0.076 4.076 9 C 0.014 3.986 10 N -0.163 5.163 11 C -0.088 4.088 12 C -0.319 4.319 13 C -0.156 4.156 14 N -0.166 5.166 15 C -0.058 4.058 16 N -0.346 5.346 17 C 0.335 3.665 18 O -0.436 6.436 19 C -0.272 4.272 20 S 0.082 5.918 21 C -0.696 4.696 22 H 0.097 0.903 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.821 3.179 26 H -0.191 1.191 27 H -0.200 1.200 28 H -0.184 1.184 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.052 0.948 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.176 0.824 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.227 0.773 40 H 0.183 0.817 41 H 0.212 0.788 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.117 0.883 45 H 0.120 0.880 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.200 -9.869 -29.771 31.793 hybrid contribution 1.199 -2.237 1.435 2.916 sum 6.399 -12.106 -28.336 31.471 Atomic orbital electron populations 1.22118 0.94984 1.02084 1.02561 1.21821 0.94802 0.96611 0.84439 0.91343 1.22646 1.03339 0.92734 0.94692 1.22623 0.95374 0.96066 0.88002 0.89121 1.60483 1.07457 1.04189 1.56585 1.22089 0.99296 0.87775 0.98449 1.21768 0.99670 0.72993 1.04134 1.48879 1.56258 1.07371 1.03798 1.23245 0.99808 0.89982 0.95755 1.21890 1.17050 0.98932 0.94077 1.24358 0.99242 0.94667 0.97287 1.77342 1.25992 1.05368 1.07948 1.23330 0.95797 0.88573 0.98129 1.48406 1.51029 1.31124 1.03993 1.19697 0.79922 0.84138 0.82785 1.90672 1.39446 1.30001 1.83468 1.23314 1.04402 1.02656 0.96862 1.85526 1.68520 1.42233 0.95491 1.23163 1.36714 1.15956 0.93752 0.90259 1.26136 0.95748 0.97936 0.99231 1.70175 1.38822 1.31380 1.14200 0.84948 0.78095 0.78038 0.76868 1.19118 1.20014 1.18396 0.92557 0.88936 0.94768 0.87595 0.88377 0.82412 0.95465 0.90875 0.84804 0.89353 0.77287 0.81692 0.78819 0.91311 0.89588 0.88341 0.87993 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 9.05 71.98 0.65 -3.11 16 2 C 0.13 2.81 3.49 45.34 0.16 2.97 16 3 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 4 C -0.10 -1.23 6.19 31.78 0.20 -1.04 16 5 C 0.09 1.26 3.38 46.31 0.16 1.41 16 6 H 0.09 1.41 7.83 -2.38 -0.02 1.39 16 7 N -0.66 -6.31 6.41 -484.44 -3.11 -9.41 16 8 C 0.05 0.65 5.74 86.30 0.50 1.14 16 9 C 0.14 1.23 6.77 86.38 0.58 1.82 16 10 N -0.38 -5.68 3.68 -348.06 -1.28 -6.96 16 11 C 0.06 0.63 11.45 83.54 0.96 1.59 16 12 C -0.29 -3.75 10.80 21.99 0.24 -3.51 16 13 C 0.03 0.51 12.03 85.24 1.03 1.54 16 14 N -0.34 -7.38 12.42 -57.02 -0.71 -8.09 16 15 C 0.07 1.32 6.29 86.85 0.55 1.86 16 16 N -0.61 -17.22 3.08 -788.06 -2.43 -19.65 16 17 C 0.55 21.82 7.65 87.66 0.67 22.49 16 18 O -0.56 -27.04 14.77 -3.00 -0.04 -27.08 16 19 C -0.12 -5.18 5.16 71.24 0.37 -4.82 16 20 S -0.14 -8.33 20.57 -56.49 -1.16 -9.49 16 21 C -0.55 -32.22 9.50 67.96 0.65 -31.57 16 22 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 23 C 0.01 0.84 5.49 84.86 0.47 1.31 16 24 N -0.91 -56.72 13.22 21.65 0.29 -56.44 16 25 Si 1.00 44.52 29.55 68.60 2.03 46.55 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 1.09 6.77 -2.38 -0.02 1.08 16 32 H 0.11 1.05 7.83 -2.39 -0.02 1.03 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.36 2.69 8.19 -89.70 -0.73 1.96 16 35 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 37 H 0.13 0.45 8.07 -2.39 -0.02 0.43 16 38 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.21 0.47 8.06 -2.91 -0.02 0.45 16 40 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.07 1.51 7.48 -2.39 -0.02 1.49 16 43 H 0.09 1.46 7.75 -2.39 -0.02 1.44 16 44 H 0.10 3.94 7.85 -2.40 -0.02 3.92 16 45 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 46 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -83.76 395.14 0.98 -82.77 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.24 Total: 15.72 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 7.16 Total: -7.92 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -7.24 Total: -100.55 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.04 Total: -27.08 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -83.76 0.98 -82.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755671146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.071 kcal (2) G-P(sol) polarization free energy of solvation -83.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds