Wall clock time and date at job start Tue Mar 31 2020 21:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.33040 * 2 1 4 4 C 1.54911 * 110.36385 * 237.64824 * 2 1 3 5 5 C 1.55156 * 101.58129 * 204.14852 * 4 2 1 6 6 H 1.08993 * 110.87527 * 277.07226 * 5 4 2 7 7 N 1.46903 * 110.71833 * 153.86193 * 5 4 2 8 8 C 1.46898 * 110.99673 * 160.02616 * 7 5 4 9 9 C 1.53006 * 109.47006 * 180.02562 * 8 7 5 10 10 N 1.46504 * 109.46883 * 180.02562 * 9 8 7 11 11 C 1.34945 * 126.03464 * 125.00022 * 10 9 8 12 12 C 1.35322 * 107.74328 * 179.97438 * 11 10 9 13 13 C 1.39863 * 107.91864 * 359.97438 * 12 11 10 14 14 N 1.30841 * 108.20499 * 359.74195 * 13 12 11 15 15 C 1.54329 * 102.94036 * 35.50325 * 5 4 2 16 16 N 1.47014 * 107.27126 * 337.80585 * 15 5 4 17 17 C 1.34778 * 125.65224 * 178.90374 * 16 15 5 18 18 O 1.21275 * 120.00726 * 180.02562 * 17 16 15 19 19 C 1.50699 * 119.99654 * 0.02651 * 17 16 15 20 20 S 1.80998 * 109.47335 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00229 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00336 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00244 * 180.02562 * 21 20 19 24 24 N 1.31636 * 119.99961 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00161 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46875 * 90.00183 * 25 23 21 27 27 H 1.48502 * 109.47145 * 210.00119 * 25 23 21 28 28 H 1.48496 * 109.47002 * 329.99843 * 25 23 21 29 29 H 1.08998 * 109.46794 * 299.21685 * 1 2 3 30 30 H 1.08999 * 109.46834 * 59.20967 * 1 2 3 31 31 H 1.08999 * 109.47242 * 179.21721 * 1 2 3 32 32 H 1.09007 * 111.00083 * 86.08040 * 4 2 1 33 33 H 1.08996 * 111.00348 * 322.22949 * 4 2 1 34 34 H 1.00894 * 111.00528 * 283.98087 * 7 5 4 35 35 H 1.09001 * 109.47392 * 60.00807 * 8 7 5 36 36 H 1.09001 * 109.47520 * 300.00529 * 8 7 5 37 37 H 1.09001 * 109.47002 * 299.99782 * 9 8 7 38 38 H 1.08993 * 109.46955 * 60.00219 * 9 8 7 39 39 H 1.07999 * 126.12987 * 359.95729 * 11 10 9 40 40 H 1.08001 * 126.03875 * 180.02562 * 12 11 10 41 41 H 1.08004 * 125.89957 * 179.97438 * 13 12 11 42 42 H 1.09003 * 109.87898 * 97.21984 * 15 5 4 43 43 H 1.08996 * 109.88062 * 218.22884 * 15 5 4 44 44 H 1.09007 * 109.47037 * 299.99764 * 19 17 16 45 45 H 1.09000 * 109.47804 * 59.99493 * 19 17 16 46 46 H 0.96995 * 119.99874 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0691 -0.7771 -1.2269 5 6 3.4778 -1.2005 -0.7331 6 1 4.1968 -0.3932 -0.8719 7 7 3.9261 -2.4177 -1.4226 8 6 5.3853 -2.5637 -1.3374 9 6 5.8136 -3.8394 -2.0657 10 7 7.2688 -3.9853 -1.9801 11 6 7.9323 -5.0596 -1.5040 12 6 9.2572 -4.8005 -1.5967 13 6 9.4085 -3.5245 -2.1490 14 7 8.2173 -3.0372 -2.3846 15 6 3.2494 -1.4760 0.7681 16 7 2.0432 -0.7373 1.1690 17 6 1.4965 -0.7350 2.4009 18 8 0.4954 -0.0862 2.6190 19 6 2.1293 -1.5388 3.5075 20 16 1.1703 -1.3312 5.0284 21 6 2.1056 -2.3488 6.1212 22 1 2.9829 -2.8651 5.7604 23 6 1.7145 -2.4876 7.4457 24 7 0.6444 -1.8595 7.8853 25 14 2.7057 -3.5669 8.6041 26 1 3.7594 -2.7517 9.2602 27 1 1.8068 -4.1391 9.6385 28 1 3.3389 -4.6679 7.8347 29 1 -0.3633 0.5016 0.8969 30 1 -0.3633 0.5261 -0.8828 31 1 -0.3634 -1.0275 -0.0140 32 1 2.1398 -0.1284 -2.1000 33 1 1.4510 -1.6494 -1.4392 34 1 3.4591 -3.2336 -1.0564 35 1 5.6839 -2.6249 -0.2908 36 1 5.8646 -1.7021 -1.8021 37 1 5.3344 -4.7012 -1.6012 38 1 5.5152 -3.7778 -3.1121 39 1 7.4858 -5.9640 -1.1178 40 1 10.0565 -5.4625 -1.2980 41 1 10.3467 -3.0286 -2.3500 42 1 3.1013 -2.5437 0.9306 43 1 4.1077 -1.1292 1.3434 44 1 2.1448 -2.5923 3.2282 45 1 3.1494 -1.1914 3.6714 46 1 0.3709 -1.9568 8.8108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755671148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:37 Heat of formation + Delta-G solvation = 28.403860 kcal Electronic energy + Delta-G solvation = -26139.270826 eV Core-core repulsion = 22384.064257 eV Total energy + Delta-G solvation = -3755.206569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98170 -41.35782 -39.07542 -36.84329 -34.62166 -34.15474 -33.41826 -31.34548 -30.69669 -30.20643 -28.01461 -27.69682 -26.71212 -24.17701 -23.22426 -22.12764 -21.86720 -21.32267 -20.44853 -19.48273 -18.18550 -18.15135 -17.57511 -16.93481 -16.91528 -16.53838 -16.00679 -15.86010 -15.65082 -15.44560 -15.11419 -14.75439 -14.60905 -14.41500 -14.30932 -13.94638 -13.76217 -13.57397 -13.47970 -13.34172 -13.20767 -13.13252 -12.97337 -12.90804 -12.62524 -12.49347 -12.29263 -12.02980 -11.76033 -11.73943 -11.52721 -11.17552 -10.69062 -10.35751 -10.32902 -9.80430 -9.54963 -9.48153 -8.71674 -8.37955 -6.16928 1.01061 1.20382 1.40107 1.41986 1.53146 1.53863 1.60923 1.98315 2.03325 2.23997 2.96064 2.97852 3.21088 3.43691 3.49523 3.65786 3.89618 3.98117 4.00680 4.06469 4.11433 4.16025 4.20704 4.24742 4.34729 4.35359 4.41544 4.55782 4.58723 4.63478 4.74679 4.80850 4.88783 4.93566 4.97553 5.03176 5.18402 5.20674 5.25812 5.37520 5.56298 5.74380 5.82832 6.15903 6.16254 6.27332 6.38344 6.79799 7.02962 7.11752 8.71314 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008567 B = 0.002648 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.609131 B =10570.986523 C =13530.645293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 H 0.078 0.922 4 C -0.100 4.100 5 C 0.092 3.908 6 H 0.102 0.898 7 N -0.663 5.663 8 C 0.056 3.944 9 C 0.134 3.866 10 N -0.379 5.379 11 C 0.052 3.948 12 C -0.291 4.291 13 C 0.032 3.968 14 N -0.337 5.337 15 C 0.068 3.932 16 N -0.612 5.612 17 C 0.546 3.454 18 O -0.553 6.553 19 C -0.121 4.121 20 S -0.146 6.146 21 C -0.547 4.547 22 H 0.080 0.920 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.257 1.257 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.354 0.646 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.204 0.796 40 H 0.164 0.836 41 H 0.200 0.800 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.460 -6.618 -25.087 29.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.096 0.904 4 C -0.138 4.138 5 C -0.019 4.019 6 H 0.120 0.880 7 N -0.294 5.294 8 C -0.074 4.074 9 C 0.013 3.987 10 N -0.163 5.163 11 C -0.094 4.094 12 C -0.320 4.320 13 C -0.153 4.153 14 N -0.159 5.159 15 C -0.057 4.057 16 N -0.348 5.348 17 C 0.334 3.666 18 O -0.431 6.431 19 C -0.272 4.272 20 S 0.081 5.919 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.821 3.179 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.181 1.181 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.221 0.779 40 H 0.181 0.819 41 H 0.217 0.783 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.037 -4.336 -25.664 28.676 hybrid contribution 2.001 -1.984 2.197 3.573 sum 14.038 -6.320 -23.467 28.066 Atomic orbital electron populations 1.22079 0.94516 1.02113 1.03084 1.22164 0.95060 0.96090 0.84286 0.90414 1.22809 0.94281 1.00803 0.95921 1.22539 0.97837 0.93774 0.87750 0.87963 1.60482 1.04672 1.05311 1.58941 1.22076 0.88464 0.98392 0.98510 1.21754 0.73525 0.99883 1.03532 1.48850 1.06812 1.12481 1.48118 1.23207 0.93404 0.93849 0.98928 1.21886 0.96800 0.99444 1.13844 1.24379 0.96825 0.95622 0.98491 1.77295 0.98698 1.15836 1.24060 1.23067 0.86939 0.97052 0.98612 1.48433 1.28700 1.49165 1.08460 1.19689 0.83405 0.81062 0.82403 1.90646 1.26351 1.44271 1.81883 1.23316 1.03592 1.03100 0.97202 1.85553 1.39343 1.65064 1.01916 1.23166 1.15124 1.33528 0.97675 0.90146 1.26141 0.96420 0.97359 0.99181 1.70180 1.25056 1.42298 1.17124 0.84948 0.77741 0.78065 0.77196 1.19322 1.20132 1.18126 0.93018 0.89446 0.93412 0.87271 0.89556 0.82546 0.95005 0.90827 0.85935 0.88656 0.77886 0.81883 0.78321 0.90591 0.91430 0.87976 0.88323 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 8.71 71.98 0.63 -3.40 16 2 C 0.13 2.78 3.77 45.47 0.17 2.95 16 3 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.10 -1.38 6.19 31.99 0.20 -1.18 16 5 C 0.09 1.23 3.24 46.10 0.15 1.38 16 6 H 0.10 1.35 7.89 -2.39 -0.02 1.33 16 7 N -0.66 -6.87 6.36 -485.44 -3.09 -9.96 16 8 C 0.06 0.66 5.73 86.31 0.49 1.15 16 9 C 0.13 1.31 6.77 86.38 0.58 1.90 16 10 N -0.38 -5.74 3.68 -348.05 -1.28 -7.02 16 11 C 0.05 0.63 11.45 83.54 0.96 1.59 16 12 C -0.29 -3.89 10.80 21.99 0.24 -3.65 16 13 C 0.03 0.51 12.02 85.23 1.02 1.54 16 14 N -0.34 -6.70 12.42 -57.02 -0.71 -7.41 16 15 C 0.07 1.29 6.14 86.73 0.53 1.83 16 16 N -0.61 -16.71 3.24 -788.16 -2.56 -19.27 16 17 C 0.55 21.06 7.65 87.66 0.67 21.73 16 18 O -0.55 -25.89 13.52 -3.01 -0.04 -25.93 16 19 C -0.12 -4.98 5.35 71.24 0.38 -4.60 16 20 S -0.15 -8.20 20.57 -56.49 -1.16 -9.37 16 21 C -0.55 -31.42 9.50 67.95 0.65 -30.77 16 22 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 23 C 0.01 0.79 5.49 84.86 0.47 1.26 16 24 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 25 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 29 H 0.05 1.74 5.89 -2.39 -0.01 1.73 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.09 1.19 8.06 -2.39 -0.02 1.17 16 34 H 0.35 2.94 8.16 -89.70 -0.73 2.21 16 35 H 0.03 0.44 8.13 -2.39 -0.02 0.42 16 36 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 37 H 0.12 0.51 8.07 -2.39 -0.02 0.49 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.08 1.33 7.57 -2.39 -0.02 1.31 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 44 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 45 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 46 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -80.97 393.96 0.86 -80.10 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.24 Total: 17.35 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 7.14 Total: -8.27 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -7.34 Total: -99.37 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.04 Total: -25.93 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.37 kcal Total: -80.97 0.86 -80.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755671148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.507 kcal (2) G-P(sol) polarization free energy of solvation -80.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds