Wall clock time and date at job start Tue Mar 31 2020 21:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.41384 * 2 1 4 4 C 1.54909 * 110.36315 * 122.29470 * 2 1 3 5 5 C 1.55159 * 101.57990 * 155.84951 * 4 2 1 6 6 H 1.08999 * 110.72303 * 82.85766 * 5 4 2 7 7 N 1.46903 * 110.87111 * 206.06039 * 5 4 2 8 8 C 1.46899 * 110.99918 * 200.06058 * 7 5 4 9 9 C 1.53003 * 109.47232 * 180.02562 * 8 7 5 10 10 N 1.46498 * 109.47089 * 180.02562 * 9 8 7 11 11 C 1.34941 * 126.03725 * 124.71707 * 10 9 8 12 12 C 1.35315 * 107.74891 * 179.83463 * 11 10 9 13 13 C 1.39873 * 107.91542 * 0.42372 * 12 11 10 14 14 N 1.30835 * 108.20480 * 359.73738 * 13 12 11 15 15 C 1.54324 * 102.94134 * 324.49367 * 5 4 2 16 16 N 1.47020 * 107.39983 * 22.11770 * 15 5 4 17 17 C 1.34780 * 125.64983 * 181.10309 * 16 15 5 18 18 O 1.21276 * 120.00190 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99770 * 0.02562 * 17 16 15 20 20 S 1.80993 * 109.47192 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00296 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99858 * 0.02562 * 21 20 19 23 23 C 1.38794 * 120.00411 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99992 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00055 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47236 * 90.00099 * 25 23 21 27 27 H 1.48505 * 109.47123 * 209.99781 * 25 23 21 28 28 H 1.48498 * 109.47183 * 329.99909 * 25 23 21 29 29 H 1.09001 * 109.46976 * 297.70495 * 1 2 3 30 30 H 1.09000 * 109.47110 * 57.70800 * 1 2 3 31 31 H 1.09001 * 109.46967 * 177.70899 * 1 2 3 32 32 H 1.08994 * 111.00889 * 37.76930 * 4 2 1 33 33 H 1.09006 * 111.00238 * 273.91742 * 4 2 1 34 34 H 1.00901 * 110.99869 * 324.01502 * 7 5 4 35 35 H 1.09003 * 109.47035 * 300.00397 * 8 7 5 36 36 H 1.08997 * 109.47156 * 60.00391 * 8 7 5 37 37 H 1.09002 * 109.46656 * 300.00271 * 9 8 7 38 38 H 1.09000 * 109.46883 * 59.99595 * 9 8 7 39 39 H 1.08006 * 126.12578 * 359.97438 * 11 10 9 40 40 H 1.07997 * 126.04527 * 180.16077 * 12 11 10 41 41 H 1.08004 * 125.89794 * 179.76051 * 13 12 11 42 42 H 1.09002 * 109.88322 * 141.61300 * 15 5 4 43 43 H 1.09000 * 109.88025 * 262.62465 * 15 5 4 44 44 H 1.08992 * 109.47408 * 300.00360 * 19 17 16 45 45 H 1.09005 * 109.47188 * 60.00318 * 19 17 16 46 46 H 0.97002 * 120.00459 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0691 -0.7759 1.2276 5 6 3.4777 -1.1998 0.7342 6 1 4.1945 -0.3902 0.8722 7 7 3.9302 -2.4152 1.4242 8 6 5.3898 -2.5569 1.3382 9 6 5.8222 -3.8314 2.0660 10 7 7.2779 -3.9725 1.9806 11 6 8.1244 -4.1115 3.0222 12 6 9.3783 -4.2145 2.5239 13 6 9.2960 -4.1259 1.1304 14 7 8.0375 -3.9808 0.8036 15 6 3.2493 -1.4769 -0.7666 16 7 2.0424 -0.7412 -1.1709 17 6 1.4975 -0.7426 -2.4036 18 8 0.4961 -0.0953 -2.6248 19 6 2.1327 -1.5487 -3.5072 20 16 1.1757 -1.3460 -5.0300 21 6 2.1136 -2.3654 -6.1189 22 1 2.9909 -2.8800 -5.7554 23 6 1.7246 -2.5081 -7.4436 24 7 0.6546 -1.8822 -7.8863 25 14 2.7186 -3.5894 -8.5977 26 1 2.1914 -4.9770 -8.5528 27 1 2.6122 -3.0641 -9.9827 28 1 4.1422 -3.5868 -8.1753 29 1 -0.3633 0.4778 0.9099 30 1 -0.3633 0.5490 -0.8687 31 1 -0.3633 -1.0269 -0.0411 32 1 1.4510 -1.6480 1.4409 33 1 2.1398 -0.1263 2.1001 34 1 3.6223 -2.4213 2.3851 35 1 5.6879 -2.6177 0.2915 36 1 5.8667 -1.6936 1.8022 37 1 5.5241 -3.7710 3.1126 38 1 5.3453 -4.6946 1.6016 39 1 7.8501 -4.1383 4.0665 40 1 10.2830 -4.3385 3.1004 41 1 10.1278 -4.1701 0.4429 42 1 4.1065 -1.1281 -1.3427 43 1 3.1040 -2.5450 -0.9284 44 1 3.1526 -1.2007 -3.6705 45 1 2.1488 -2.6015 -3.2252 46 1 0.3824 -1.9821 -8.8120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755671150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:41 Heat of formation + Delta-G solvation = 54.327783 kcal Electronic energy + Delta-G solvation = -26125.038557 eV Core-core repulsion = 22370.956134 eV Total energy + Delta-G solvation = -3754.082423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43647 -40.10430 -37.87986 -36.03008 -33.48226 -32.39246 -32.18040 -30.67445 -30.01725 -28.67045 -27.37882 -25.85492 -25.43031 -23.55378 -22.04529 -21.43844 -21.15891 -20.71467 -18.90410 -17.63996 -17.56735 -17.05404 -16.55551 -16.04399 -15.21128 -15.09114 -14.92518 -14.80008 -14.76674 -14.25313 -14.10684 -14.00035 -13.60490 -13.38753 -13.08569 -13.02155 -12.79350 -12.59113 -12.44798 -12.31248 -12.00621 -11.85410 -11.71493 -11.43938 -11.13067 -11.02477 -10.99284 -10.92240 -10.90877 -10.72321 -9.77420 -9.76888 -9.21096 -9.02919 -8.99442 -8.93593 -8.45080 -8.19608 -6.46121 -6.18078 -3.88253 1.56069 2.09486 2.54265 2.91084 3.11332 3.25542 3.28386 3.33272 3.54022 3.73823 4.03988 4.18972 4.24148 4.34580 4.46214 4.49531 4.66644 4.78634 4.79475 4.98117 5.06944 5.13162 5.17063 5.17848 5.26856 5.36747 5.40124 5.44857 5.48759 5.57777 5.64007 5.67264 5.68156 5.72512 5.76084 5.95770 6.14340 6.20373 6.30415 6.34267 6.47279 6.64508 6.66064 6.82058 7.38317 7.63620 7.73779 8.39313 8.62518 9.27384 10.89362 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.002655 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.794688 B =10544.892808 C =13561.883549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.072 0.928 4 C -0.130 4.130 5 C 0.078 3.922 6 H 0.063 0.937 7 N -0.675 5.675 8 C 0.047 3.953 9 C 0.135 3.865 10 N -0.372 5.372 11 C 0.051 3.949 12 C -0.276 4.276 13 C 0.043 3.957 14 N -0.289 5.289 15 C 0.111 3.889 16 N -0.623 5.623 17 C 0.552 3.448 18 O -0.513 6.513 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.533 4.533 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.345 0.655 35 H 0.092 0.908 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.172 0.828 40 H 0.146 0.854 41 H 0.183 0.817 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.003 -1.872 28.176 31.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.032 4.032 6 H 0.081 0.919 7 N -0.307 5.307 8 C -0.083 4.083 9 C 0.014 3.986 10 N -0.155 5.155 11 C -0.095 4.095 12 C -0.306 4.306 13 C -0.143 4.143 14 N -0.111 5.111 15 C -0.013 4.013 16 N -0.361 5.361 17 C 0.341 3.659 18 O -0.387 6.387 19 C -0.298 4.298 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.110 0.890 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.189 0.811 40 H 0.164 0.836 41 H 0.200 0.800 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.242 -1.131 26.113 28.073 hybrid contribution 2.897 -0.957 0.931 3.190 sum 13.139 -2.088 27.044 30.140 Atomic orbital electron populations 1.22128 0.93567 1.03122 1.03151 1.21818 0.95647 0.95099 0.83917 0.91014 1.23057 0.95210 1.01052 0.97504 1.22489 0.96303 0.90271 0.94174 0.91945 1.60266 1.10747 1.39191 1.20511 1.22244 0.87840 0.95395 1.02775 1.21625 0.74699 1.00249 1.02063 1.48685 1.06813 1.55900 1.04087 1.22577 0.90640 1.01945 0.94365 1.21537 0.97588 1.16723 0.94709 1.23959 0.94837 0.99696 0.95835 1.77447 1.03936 1.23641 1.06038 1.21938 0.87744 0.98018 0.93604 1.48605 1.28500 1.49612 1.09389 1.19956 0.83648 0.81222 0.81080 1.90650 1.24525 1.42675 1.80855 1.23521 1.04411 1.01855 0.99965 1.85339 1.36484 1.64154 0.97434 1.22864 1.14846 1.33355 0.97102 0.90953 1.24986 0.95371 0.95969 0.97264 1.70020 1.23272 1.40640 1.16431 0.86173 0.79990 0.80021 0.79365 1.20267 1.20772 1.19660 0.92510 0.89316 0.92444 0.89312 0.90102 0.83592 0.88964 0.94505 0.88785 0.88496 0.81070 0.83581 0.80004 0.91727 0.90033 0.89466 0.89325 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 8.59 37.16 0.32 -1.77 16 2 C 0.14 1.65 3.78 -66.24 -0.25 1.40 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.05 5.95 -24.58 -0.15 -1.19 16 5 C 0.08 0.65 3.24 -65.88 -0.21 0.44 16 6 H 0.06 0.50 7.89 -51.93 -0.41 0.09 16 7 N -0.67 -4.57 6.30 -104.79 -0.66 -5.23 16 8 C 0.05 0.34 5.72 -3.82 -0.02 0.32 16 9 C 0.14 0.83 6.77 -4.04 -0.03 0.80 16 10 N -0.37 -3.16 3.68 -61.36 -0.23 -3.38 16 11 C 0.05 0.34 11.45 -17.23 -0.20 0.14 16 12 C -0.28 -2.00 10.80 -40.01 -0.43 -2.44 16 13 C 0.04 0.38 12.03 -17.36 -0.21 0.17 16 14 N -0.29 -3.20 12.42 30.63 0.38 -2.82 16 15 C 0.11 1.32 6.16 -3.06 -0.02 1.31 16 16 N -0.62 -9.27 3.25 -162.81 -0.53 -9.80 16 17 C 0.55 10.89 7.65 -10.98 -0.08 10.81 16 18 O -0.51 -11.74 13.61 5.56 0.08 -11.66 16 19 C -0.15 -3.14 5.35 36.01 0.19 -2.95 16 20 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 21 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 22 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 25 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.44 6.11 -51.93 -0.32 1.12 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.35 1.58 8.50 -39.29 -0.33 1.24 16 35 H 0.09 0.90 8.13 -51.93 -0.42 0.48 16 36 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 37 H 0.09 0.29 8.07 -51.93 -0.42 -0.13 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.17 0.52 8.06 -52.48 -0.42 0.10 16 40 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 44 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 45 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -36.56 394.71 -9.75 -46.32 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.35 Total: -0.31 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -0.89 Total: -6.18 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.30 Total: -47.06 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.56 -9.75 -46.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755671150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.646 kcal (2) G-P(sol) polarization free energy of solvation -36.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds