Wall clock time and date at job start Tue Mar 31 2020 21:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.41384 * 2 1 4 4 C 1.54909 * 110.36315 * 122.29470 * 2 1 3 5 5 C 1.55159 * 101.57990 * 155.84951 * 4 2 1 6 6 H 1.08999 * 110.72303 * 82.85766 * 5 4 2 7 7 N 1.46903 * 110.87111 * 206.06039 * 5 4 2 8 8 C 1.46899 * 110.99918 * 200.06058 * 7 5 4 9 9 C 1.53003 * 109.47232 * 180.02562 * 8 7 5 10 10 N 1.46498 * 109.47089 * 180.02562 * 9 8 7 11 11 C 1.34941 * 126.03725 * 124.71707 * 10 9 8 12 12 C 1.35315 * 107.74891 * 179.83463 * 11 10 9 13 13 C 1.39873 * 107.91542 * 0.42372 * 12 11 10 14 14 N 1.30835 * 108.20480 * 359.73738 * 13 12 11 15 15 C 1.54324 * 102.94134 * 324.49367 * 5 4 2 16 16 N 1.47020 * 107.39983 * 22.11770 * 15 5 4 17 17 C 1.34780 * 125.64983 * 181.10309 * 16 15 5 18 18 O 1.21276 * 120.00190 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99770 * 0.02562 * 17 16 15 20 20 S 1.80993 * 109.47192 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00296 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99858 * 0.02562 * 21 20 19 23 23 C 1.38794 * 120.00411 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99992 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00055 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47236 * 90.00099 * 25 23 21 27 27 H 1.48505 * 109.47123 * 209.99781 * 25 23 21 28 28 H 1.48498 * 109.47183 * 329.99909 * 25 23 21 29 29 H 1.09001 * 109.46976 * 297.70495 * 1 2 3 30 30 H 1.09000 * 109.47110 * 57.70800 * 1 2 3 31 31 H 1.09001 * 109.46967 * 177.70899 * 1 2 3 32 32 H 1.08994 * 111.00889 * 37.76930 * 4 2 1 33 33 H 1.09006 * 111.00238 * 273.91742 * 4 2 1 34 34 H 1.00901 * 110.99869 * 324.01502 * 7 5 4 35 35 H 1.09003 * 109.47035 * 300.00397 * 8 7 5 36 36 H 1.08997 * 109.47156 * 60.00391 * 8 7 5 37 37 H 1.09002 * 109.46656 * 300.00271 * 9 8 7 38 38 H 1.09000 * 109.46883 * 59.99595 * 9 8 7 39 39 H 1.08006 * 126.12578 * 359.97438 * 11 10 9 40 40 H 1.07997 * 126.04527 * 180.16077 * 12 11 10 41 41 H 1.08004 * 125.89794 * 179.76051 * 13 12 11 42 42 H 1.09002 * 109.88322 * 141.61300 * 15 5 4 43 43 H 1.09000 * 109.88025 * 262.62465 * 15 5 4 44 44 H 1.08992 * 109.47408 * 300.00360 * 19 17 16 45 45 H 1.09005 * 109.47188 * 60.00318 * 19 17 16 46 46 H 0.97002 * 120.00459 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0691 -0.7759 1.2276 5 6 3.4777 -1.1998 0.7342 6 1 4.1945 -0.3902 0.8722 7 7 3.9302 -2.4152 1.4242 8 6 5.3898 -2.5569 1.3382 9 6 5.8222 -3.8314 2.0660 10 7 7.2779 -3.9725 1.9806 11 6 8.1244 -4.1115 3.0222 12 6 9.3783 -4.2145 2.5239 13 6 9.2960 -4.1259 1.1304 14 7 8.0375 -3.9808 0.8036 15 6 3.2493 -1.4769 -0.7666 16 7 2.0424 -0.7412 -1.1709 17 6 1.4975 -0.7426 -2.4036 18 8 0.4961 -0.0953 -2.6248 19 6 2.1327 -1.5487 -3.5072 20 16 1.1757 -1.3460 -5.0300 21 6 2.1136 -2.3654 -6.1189 22 1 2.9909 -2.8800 -5.7554 23 6 1.7246 -2.5081 -7.4436 24 7 0.6546 -1.8822 -7.8863 25 14 2.7186 -3.5894 -8.5977 26 1 2.1914 -4.9770 -8.5528 27 1 2.6122 -3.0641 -9.9827 28 1 4.1422 -3.5868 -8.1753 29 1 -0.3633 0.4778 0.9099 30 1 -0.3633 0.5490 -0.8687 31 1 -0.3633 -1.0269 -0.0411 32 1 1.4510 -1.6480 1.4409 33 1 2.1398 -0.1263 2.1001 34 1 3.6223 -2.4213 2.3851 35 1 5.6879 -2.6177 0.2915 36 1 5.8667 -1.6936 1.8022 37 1 5.5241 -3.7710 3.1126 38 1 5.3453 -4.6946 1.6016 39 1 7.8501 -4.1383 4.0665 40 1 10.2830 -4.3385 3.1004 41 1 10.1278 -4.1701 0.4429 42 1 4.1065 -1.1281 -1.3427 43 1 3.1040 -2.5450 -0.9284 44 1 3.1526 -1.2007 -3.6705 45 1 2.1488 -2.6015 -3.2252 46 1 0.3824 -1.9821 -8.8120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755671150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:40 Heat of formation + Delta-G solvation = 28.161917 kcal Electronic energy + Delta-G solvation = -26126.173194 eV Core-core repulsion = 22370.956134 eV Total energy + Delta-G solvation = -3755.217060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.98023 -41.29051 -39.02260 -36.86249 -34.61977 -34.16218 -33.38654 -31.34958 -30.71912 -30.20708 -28.03531 -27.68758 -26.81569 -24.22335 -23.09516 -22.03766 -21.82487 -21.32413 -20.39816 -19.43025 -18.16621 -18.12131 -17.66897 -16.91587 -16.84536 -16.57061 -16.15305 -15.84527 -15.65569 -15.38859 -15.00297 -14.78595 -14.70523 -14.48075 -14.34587 -13.94544 -13.90528 -13.55697 -13.43709 -13.22497 -13.18078 -13.13806 -12.92616 -12.88745 -12.62730 -12.44108 -12.17284 -12.01410 -11.78479 -11.75165 -11.49499 -11.17163 -10.69276 -10.36828 -10.33331 -9.71220 -9.60013 -9.47902 -8.70848 -8.37670 -6.16309 1.02683 1.21001 1.39969 1.41584 1.53634 1.55245 1.62060 1.98718 2.04527 2.24470 2.96054 2.98806 3.22394 3.37697 3.50831 3.66721 3.88663 3.95878 4.05058 4.10986 4.11918 4.15875 4.20553 4.33693 4.36855 4.37891 4.43397 4.58655 4.62833 4.68657 4.76085 4.77417 4.86578 4.91795 4.95802 4.99183 5.18583 5.20116 5.25533 5.38187 5.56133 5.74381 5.85318 6.16615 6.20202 6.36217 6.43095 6.81223 7.03244 7.12740 8.71669 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.002655 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.794688 B =10544.892808 C =13561.883549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.128 3.872 3 H 0.081 0.919 4 C -0.111 4.111 5 C 0.091 3.909 6 H 0.075 0.925 7 N -0.674 5.674 8 C 0.058 3.942 9 C 0.135 3.865 10 N -0.380 5.380 11 C 0.057 3.943 12 C -0.290 4.290 13 C 0.029 3.971 14 N -0.344 5.344 15 C 0.102 3.898 16 N -0.614 5.614 17 C 0.549 3.451 18 O -0.554 6.554 19 C -0.122 4.122 20 S -0.142 6.142 21 C -0.548 4.548 22 H 0.078 0.922 23 C 0.015 3.985 24 N -0.909 5.909 25 Si 0.999 3.001 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.260 1.260 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.365 0.635 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.134 0.866 38 H 0.085 0.915 39 H 0.212 0.788 40 H 0.166 0.834 41 H 0.195 0.805 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.859 -2.713 31.551 34.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.099 0.901 4 C -0.149 4.149 5 C -0.020 4.020 6 H 0.093 0.907 7 N -0.308 5.308 8 C -0.072 4.072 9 C 0.014 3.986 10 N -0.163 5.163 11 C -0.089 4.089 12 C -0.319 4.319 13 C -0.156 4.156 14 N -0.166 5.166 15 C -0.022 4.022 16 N -0.350 5.350 17 C 0.337 3.663 18 O -0.432 6.432 19 C -0.273 4.273 20 S 0.085 5.915 21 C -0.696 4.696 22 H 0.096 0.904 23 C -0.190 4.190 24 N -0.546 5.546 25 Si 0.820 3.180 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.185 1.185 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.138 0.862 34 H 0.186 0.814 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.152 0.848 38 H 0.104 0.896 39 H 0.228 0.772 40 H 0.184 0.816 41 H 0.212 0.788 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.126 -1.981 29.556 32.008 hybrid contribution 2.350 -0.680 0.027 2.446 sum 14.475 -2.662 29.583 33.042 Atomic orbital electron populations 1.22040 0.94414 1.01951 1.03053 1.22184 0.95123 0.96007 0.84158 0.90106 1.23005 0.94182 1.01195 0.96538 1.22325 0.97013 0.91188 0.91426 0.90703 1.60103 1.10576 1.38319 1.21830 1.22052 0.87894 0.96258 1.01023 1.21760 0.73723 0.99030 1.04130 1.48873 1.07571 1.55963 1.03886 1.23255 0.90113 0.99924 0.95620 1.21891 0.98920 1.16960 0.94149 1.24372 0.94754 0.99196 0.97270 1.77374 1.05152 1.25888 1.08213 1.22191 0.86168 0.97051 0.96744 1.48552 1.28834 1.49041 1.08568 1.19605 0.83396 0.81003 0.82343 1.90645 1.26247 1.44430 1.81873 1.23321 1.03614 1.03006 0.97372 1.85448 1.39350 1.64892 1.01796 1.23169 1.15073 1.33586 0.97787 0.90391 1.26123 0.96490 0.97333 0.99067 1.70174 1.25105 1.42199 1.17095 0.84956 0.78475 0.77871 0.76694 1.19163 1.19923 1.18451 0.89005 0.93285 0.93758 0.89098 0.86236 0.81351 0.92255 0.94039 0.84837 0.89626 0.77163 0.81640 0.78781 0.92059 0.90934 0.88426 0.88365 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 8.59 71.98 0.62 -3.31 16 2 C 0.13 2.81 3.78 45.41 0.17 2.98 16 3 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.11 -1.36 5.95 31.99 0.19 -1.17 16 5 C 0.09 1.25 3.24 46.10 0.15 1.40 16 6 H 0.08 0.92 7.89 -2.39 -0.02 0.90 16 7 N -0.67 -7.03 6.30 -485.44 -3.06 -10.09 16 8 C 0.06 0.71 5.72 86.30 0.49 1.20 16 9 C 0.13 1.32 6.77 86.38 0.58 1.91 16 10 N -0.38 -5.79 3.68 -348.06 -1.28 -7.07 16 11 C 0.06 0.60 11.45 83.54 0.96 1.56 16 12 C -0.29 -3.68 10.80 21.99 0.24 -3.44 16 13 C 0.03 0.51 12.03 85.24 1.02 1.53 16 14 N -0.34 -7.56 12.42 -57.02 -0.71 -8.27 16 15 C 0.10 2.33 6.16 86.73 0.53 2.86 16 16 N -0.61 -18.07 3.25 -787.39 -2.56 -20.63 16 17 C 0.55 22.33 7.65 87.66 0.67 23.00 16 18 O -0.55 -26.67 13.61 -3.02 -0.04 -26.71 16 19 C -0.12 -5.38 5.35 71.24 0.38 -5.00 16 20 S -0.14 -8.26 20.57 -56.49 -1.16 -9.43 16 21 C -0.55 -32.71 9.50 67.95 0.65 -32.07 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.87 5.49 84.86 0.47 1.33 16 24 N -0.91 -57.11 13.22 21.65 0.29 -56.82 16 25 Si 1.00 45.11 29.55 68.60 2.03 47.14 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 28 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.64 6.11 -2.39 -0.01 1.63 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.15 8.06 -2.39 -0.02 1.13 16 33 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.36 1.66 8.50 -89.69 -0.76 0.90 16 35 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 36 H 0.04 0.48 8.08 -2.39 -0.02 0.46 16 37 H 0.13 0.22 8.07 -2.39 -0.02 0.21 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.21 0.31 8.06 -2.91 -0.02 0.28 16 40 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 1.81 8.03 -2.39 -0.02 1.79 16 44 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 45 H 0.10 4.09 8.14 -2.39 -0.02 4.07 16 46 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -85.36 394.71 0.84 -84.52 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.21 Total: 14.59 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 7.13 Total: -7.23 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -7.32 Total: -102.88 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.04 Total: -26.71 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.43 kcal Total: -85.36 0.84 -84.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755671150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.678 kcal (2) G-P(sol) polarization free energy of solvation -85.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds