Wall clock time and date at job start Tue Mar 31 2020 21:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.99619 * 2 1 4 4 C 1.54320 * 109.88209 * 121.10332 * 2 1 3 5 5 C 1.55155 * 102.94237 * 97.22359 * 4 2 1 6 6 H 1.09007 * 111.00278 * 277.38289 * 5 4 2 7 7 N 1.46905 * 111.00367 * 153.57492 * 5 4 2 8 8 C 1.46897 * 111.00070 * 154.99455 * 7 5 4 9 9 C 1.52992 * 109.47242 * 179.97438 * 8 7 5 10 10 N 1.46503 * 109.47353 * 180.02562 * 9 8 7 11 11 C 1.34947 * 126.03581 * 125.00000 * 10 9 8 12 12 C 1.35324 * 107.74518 * 179.97438 * 11 10 9 13 13 C 1.39876 * 107.91899 * 359.97438 * 12 11 10 14 14 N 1.30842 * 108.19865 * 359.74753 * 13 12 11 15 15 C 1.54687 * 101.67946 * 35.33434 * 5 4 2 16 16 N 1.47026 * 109.87556 * 238.90842 * 2 1 3 17 17 C 1.34773 * 125.64879 * 59.49040 * 16 2 1 18 18 O 1.21283 * 120.00144 * 359.97438 * 17 16 2 19 19 C 1.50705 * 119.99721 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.46942 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00017 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00294 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00153 * 180.02562 * 21 20 19 24 24 N 1.31632 * 120.00093 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00020 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 90.00077 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00257 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00251 * 25 23 21 29 29 H 1.08995 * 109.47293 * 179.64187 * 1 2 3 30 30 H 1.09003 * 109.46909 * 299.63584 * 1 2 3 31 31 H 1.08993 * 109.47318 * 59.63619 * 1 2 3 32 32 H 1.09006 * 110.71844 * 215.58695 * 4 2 1 33 33 H 1.08998 * 110.72304 * 338.85615 * 4 2 1 34 34 H 1.00897 * 110.99883 * 278.95318 * 7 5 4 35 35 H 1.08995 * 109.47488 * 300.00262 * 8 7 5 36 36 H 1.09007 * 109.46812 * 60.00068 * 8 7 5 37 37 H 1.09000 * 109.47309 * 300.00150 * 9 8 7 38 38 H 1.08998 * 109.47301 * 60.00368 * 9 8 7 39 39 H 1.07999 * 126.12960 * 359.97438 * 11 10 9 40 40 H 1.07996 * 126.04030 * 180.02562 * 12 11 10 41 41 H 1.07999 * 125.89588 * 179.97438 * 13 12 11 42 42 H 1.08998 * 110.38952 * 204.36651 * 15 5 4 43 43 H 1.08996 * 110.23630 * 82.11339 * 15 5 4 44 44 H 1.08997 * 109.46935 * 60.00104 * 19 17 16 45 45 H 1.09000 * 109.47082 * 299.99666 * 19 17 16 46 46 H 0.97006 * 119.99745 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7497 1.2426 5 6 2.3519 -2.1696 0.6921 6 1 1.4453 -2.7740 0.6608 7 7 3.3966 -2.8332 1.4834 8 6 3.2808 -4.2945 1.3880 9 6 4.3834 -4.9490 2.2226 10 7 4.2684 -6.4064 2.1270 11 6 5.2429 -7.2560 1.7402 12 6 4.7386 -8.5109 1.7873 13 6 3.4106 -8.4252 2.2182 14 7 3.1295 -7.1646 2.4276 15 6 2.8523 -1.8530 -0.7370 16 7 2.0299 -0.7140 -1.1841 17 6 1.7741 -0.3851 -2.4657 18 8 1.0762 0.5742 -2.7179 19 6 2.3553 -1.2094 -3.5856 20 16 1.8346 -0.5192 -5.1757 21 6 2.6322 -1.6435 -6.2731 22 1 3.2249 -2.4552 -5.8778 23 6 2.4997 -1.4853 -7.6457 24 7 3.0960 -2.3250 -8.4656 25 14 1.4753 -0.0810 -8.3296 26 1 2.3383 1.1115 -8.5258 27 1 0.3862 0.2479 -7.3750 28 1 0.8868 -0.4857 -9.6315 29 1 -0.3633 -1.0276 -0.0064 30 1 -0.3633 0.5082 0.8933 31 1 -0.3633 0.5194 -0.8866 32 1 2.9658 -0.2833 1.6182 33 1 1.2919 -0.7892 2.0200 34 1 4.3148 -2.5240 1.2017 35 1 2.3065 -4.6071 1.7634 36 1 3.3841 -4.5999 0.3467 37 1 5.3577 -4.6364 1.8468 38 1 4.2807 -4.6437 3.2639 39 1 6.2455 -6.9834 1.4458 40 1 5.2682 -9.4183 1.5372 41 1 2.7353 -9.2564 2.3577 42 1 2.6997 -2.7111 -1.3915 43 1 3.9058 -1.5746 -0.7145 44 1 2.0015 -2.2369 -3.5017 45 1 3.4433 -1.1932 -3.5217 46 1 3.0031 -2.2146 -9.4249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755671151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:43 Heat of formation + Delta-G solvation = 25.955187 kcal Electronic energy + Delta-G solvation = -26166.694482 eV Core-core repulsion = 22411.381731 eV Total energy + Delta-G solvation = -3755.312751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.98041 -41.39013 -39.12886 -36.90491 -34.71708 -34.15858 -33.42279 -31.31177 -30.66845 -30.32536 -27.98784 -27.88565 -26.82172 -24.18774 -23.48206 -22.03468 -21.83970 -21.33341 -20.43440 -19.63222 -18.31861 -17.98147 -17.52065 -17.15493 -17.10591 -16.49632 -16.05674 -15.91817 -15.51640 -15.41014 -15.06060 -14.94714 -14.61276 -14.40847 -14.36012 -14.09080 -14.00308 -13.74272 -13.56571 -13.40380 -13.29193 -13.15041 -13.07781 -13.02554 -12.65850 -12.50007 -12.29557 -11.94986 -11.89827 -11.62236 -11.52523 -11.20954 -10.98931 -10.59805 -10.35819 -9.84455 -9.56635 -9.48311 -9.05890 -8.55711 -6.27462 0.91133 1.01041 1.28287 1.41286 1.46523 1.49451 1.61248 1.97432 1.98156 2.21493 2.61910 2.82504 2.98332 3.41779 3.44443 3.66592 3.77451 3.96987 4.00796 4.06800 4.09157 4.11107 4.16300 4.24083 4.32146 4.34660 4.37871 4.52474 4.60560 4.66271 4.68152 4.80280 4.90301 4.93928 4.96604 5.03332 5.10924 5.18253 5.28330 5.44994 5.66339 5.73411 5.81697 6.06335 6.17439 6.28090 6.34982 6.79540 6.89194 7.02235 8.56780 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010183 B = 0.002512 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.118928 B =11141.632373 C =13439.254968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.089 3.911 6 H 0.088 0.912 7 N -0.658 5.658 8 C 0.055 3.945 9 C 0.135 3.865 10 N -0.380 5.380 11 C 0.054 3.946 12 C -0.291 4.291 13 C 0.031 3.969 14 N -0.338 5.338 15 C 0.066 3.934 16 N -0.609 5.609 17 C 0.548 3.452 18 O -0.556 6.556 19 C -0.103 4.103 20 S -0.171 6.171 21 C -0.530 4.530 22 H 0.061 0.939 23 C 0.047 3.953 24 N -0.916 5.916 25 Si 0.914 3.086 26 H -0.261 1.261 27 H -0.238 1.238 28 H -0.257 1.257 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.358 0.642 35 H 0.069 0.931 36 H 0.030 0.970 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.206 0.794 40 H 0.163 0.837 41 H 0.199 0.801 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.201 -6.356 28.009 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.090 0.910 4 C -0.136 4.136 5 C -0.022 4.022 6 H 0.106 0.894 7 N -0.290 5.290 8 C -0.075 4.075 9 C 0.014 3.986 10 N -0.163 5.163 11 C -0.093 4.093 12 C -0.321 4.321 13 C -0.154 4.154 14 N -0.160 5.160 15 C -0.058 4.058 16 N -0.344 5.344 17 C 0.335 3.665 18 O -0.434 6.434 19 C -0.254 4.254 20 S 0.055 5.945 21 C -0.677 4.677 22 H 0.079 0.921 23 C -0.159 4.159 24 N -0.553 5.553 25 Si 0.736 3.264 26 H -0.185 1.185 27 H -0.162 1.162 28 H -0.182 1.182 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.179 0.821 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.144 0.856 38 H 0.114 0.886 39 H 0.223 0.777 40 H 0.181 0.819 41 H 0.216 0.784 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.992 -3.962 28.372 28.803 hybrid contribution 1.428 -1.770 -1.999 3.028 sum 4.420 -5.732 26.373 27.349 Atomic orbital electron populations 1.22120 0.94978 1.02102 1.02621 1.21813 0.94761 0.96666 0.84218 0.91011 1.22658 1.03293 0.92830 0.94829 1.22579 0.95364 0.96031 0.88232 0.89430 1.60425 1.07550 1.04135 1.56899 1.22076 0.99760 0.87762 0.97898 1.21762 1.01038 0.72975 1.02828 1.48863 1.08707 1.07389 1.51333 1.23219 0.96487 0.90309 0.99242 1.21894 0.96231 0.98788 1.15153 1.24375 0.97432 0.94848 0.98755 1.77296 1.08784 1.04970 1.24990 1.23309 0.96080 0.88547 0.97912 1.48380 1.51078 1.30931 1.04000 1.19605 0.80007 0.84151 0.82726 1.90677 1.39353 1.29877 1.83451 1.23210 1.04815 1.02712 0.94658 1.84700 1.68641 1.42584 0.98561 1.22418 1.35913 1.15505 0.93870 0.92114 1.25557 0.95770 0.98377 0.96174 1.70012 1.43309 1.37794 1.04230 0.85876 0.80911 0.79715 0.79933 1.18510 1.16203 1.18160 0.92634 0.89152 0.94410 0.88313 0.87958 0.82147 0.91278 0.95211 0.85573 0.88557 0.77679 0.81902 0.78443 0.91088 0.89158 0.87823 0.87385 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.53 9.06 71.98 0.65 -2.87 16 2 C 0.13 2.63 3.50 45.34 0.16 2.79 16 3 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.10 -1.20 6.19 31.78 0.20 -1.01 16 5 C 0.09 1.18 3.37 46.23 0.16 1.34 16 6 H 0.09 1.37 7.83 -2.38 -0.02 1.35 16 7 N -0.66 -6.21 6.41 -484.81 -3.11 -9.32 16 8 C 0.06 0.67 5.74 86.30 0.50 1.16 16 9 C 0.13 1.28 6.77 86.38 0.58 1.86 16 10 N -0.38 -5.87 3.68 -348.06 -1.28 -7.15 16 11 C 0.05 0.66 11.45 83.54 0.96 1.62 16 12 C -0.29 -4.11 10.80 21.99 0.24 -3.87 16 13 C 0.03 0.53 12.03 85.24 1.03 1.56 16 14 N -0.34 -7.03 12.42 -57.02 -0.71 -7.74 16 15 C 0.07 1.17 6.29 86.78 0.55 1.72 16 16 N -0.61 -15.63 3.08 -788.48 -2.43 -18.06 16 17 C 0.55 19.85 7.65 87.66 0.67 20.52 16 18 O -0.56 -24.42 14.75 -3.04 -0.04 -24.46 16 19 C -0.10 -4.05 5.17 71.24 0.37 -3.69 16 20 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16 21 C -0.53 -31.09 10.04 67.95 0.68 -30.41 16 22 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 23 C 0.05 2.76 5.50 84.86 0.47 3.23 16 24 N -0.92 -55.85 13.97 21.65 0.30 -55.55 16 25 Si 0.91 45.21 27.74 68.60 1.90 47.12 16 26 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 27 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 28 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.12 6.74 -2.39 -0.02 1.10 16 32 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.10 1.05 7.83 -2.39 -0.02 1.03 16 34 H 0.36 2.10 8.19 -89.70 -0.73 1.37 16 35 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 36 H 0.03 0.43 8.14 -2.38 -0.02 0.42 16 37 H 0.13 0.40 8.07 -2.39 -0.02 0.38 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.21 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.07 1.38 7.48 -2.39 -0.02 1.36 16 43 H 0.09 1.29 7.74 -2.39 -0.02 1.27 16 44 H 0.10 3.86 7.84 -2.40 -0.02 3.84 16 45 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 46 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -79.73 392.41 0.98 -78.75 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.20 Total: 12.33 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 7.20 Total: -6.05 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -7.22 Total: -97.82 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -79.73 0.98 -78.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755671151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.704 kcal (2) G-P(sol) polarization free energy of solvation -79.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds