Wall clock time and date at job start Tue Mar 31 2020 21:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36001 * 117.00040 * 2 1 4 4 C 1.38671 * 120.03987 * 359.97438 * 3 2 1 5 5 C 1.38230 * 120.08443 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.90971 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47278 * 340.00086 * 6 5 4 8 8 C 1.52999 * 109.47017 * 100.00238 * 6 5 4 9 9 N 1.46905 * 109.47161 * 220.00163 * 6 5 4 10 10 C 1.46901 * 110.99870 * 155.00107 * 9 6 5 11 11 C 1.50697 * 109.46943 * 180.02562 * 10 9 6 12 12 O 1.21292 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.37102 * 120.00095 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99386 * 359.97438 * 14 13 11 16 16 C 1.38941 * 120.00393 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99786 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47191 * 60.00031 * 18 16 14 20 20 H 1.48504 * 109.47312 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47299 * 300.00334 * 18 16 14 22 22 C 1.38234 * 120.18163 * 0.23622 * 5 4 3 23 23 C 1.38669 * 120.08793 * 359.49040 * 22 5 4 24 24 O 1.35990 * 120.04832 * 180.25654 * 23 22 5 25 25 C 1.42903 * 116.99754 * 0.27147 * 24 23 22 26 26 C 1.38978 * 120.04729 * 179.97438 * 3 2 1 27 27 O 1.36091 * 120.08885 * 0.03394 * 26 3 2 28 28 C 1.42899 * 116.99978 * 90.00453 * 27 26 3 29 29 H 1.08998 * 109.47036 * 299.99379 * 1 2 3 30 30 H 1.08997 * 109.47297 * 60.00211 * 1 2 3 31 31 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.95792 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47624 * 60.00343 * 8 6 5 34 34 H 1.09006 * 109.47163 * 180.02562 * 8 6 5 35 35 H 1.08999 * 109.47123 * 299.99777 * 8 6 5 36 36 H 1.00901 * 110.99869 * 31.04818 * 9 6 5 37 37 H 1.09004 * 109.47031 * 299.99620 * 10 9 6 38 38 H 1.08995 * 109.47111 * 59.99900 * 10 9 6 39 39 H 0.96997 * 120.00713 * 359.97438 * 13 11 10 40 40 H 0.97001 * 119.99428 * 179.97438 * 17 16 14 41 41 H 1.07997 * 119.95487 * 179.74133 * 22 5 4 42 42 H 1.09000 * 109.47527 * 300.00074 * 25 24 23 43 43 H 1.08997 * 109.47350 * 60.00259 * 25 24 23 44 44 H 1.09002 * 109.47253 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47057 * 60.00007 * 28 27 26 46 46 H 1.08996 * 109.47638 * 180.02562 * 28 27 26 47 47 H 1.09005 * 109.47444 * 300.00269 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 -0.0005 5 6 1.9186 3.6074 -0.0011 6 6 1.0949 4.8693 -0.0022 7 1 0.0877 4.6455 -0.3540 8 6 1.0253 5.4343 1.4179 9 7 1.7160 5.8588 -0.8929 10 6 0.7204 6.8174 -1.3906 11 6 1.3929 7.8139 -2.2993 12 8 2.5845 7.7337 -2.5110 13 7 0.6705 8.7948 -2.8758 14 6 1.2824 9.7018 -3.7020 15 1 2.3435 9.6303 -3.8905 16 6 0.5376 10.7127 -4.2968 17 7 -0.7533 10.7998 -4.0670 18 14 1.3715 11.9488 -5.4220 19 1 1.9893 11.2361 -6.5690 20 1 0.3651 12.9181 -5.9249 21 1 2.4233 12.6753 -4.6662 22 6 3.2987 3.6852 -0.0060 23 6 4.0603 2.5264 0.0002 24 8 5.4180 2.6039 0.0007 25 6 5.9931 3.9121 0.0005 26 6 3.4342 1.2856 0.0005 27 8 4.1781 0.1461 0.0004 28 6 4.5333 -0.3966 -1.2730 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2135 2.3187 -0.0014 33 1 2.0324 5.6582 1.7697 34 1 0.4291 6.3468 1.4172 35 1 0.5644 4.7002 2.0788 36 1 2.1961 5.4067 -1.6567 37 1 -0.0519 6.2842 -1.9451 38 1 0.2674 7.3408 -0.5487 39 1 -0.2824 8.8592 -2.7062 40 1 -1.2732 11.5058 -4.4820 41 1 3.7844 4.6498 -0.0106 42 1 5.6693 4.4513 -0.8897 43 1 5.6687 4.4518 0.8902 44 1 7.0801 3.8312 0.0004 45 1 5.1187 0.3353 -1.8294 46 1 5.1235 -1.3018 -1.1304 47 1 3.6282 -0.6376 -1.8305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341369911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:26 Heat of formation + Delta-G solvation = -115.153542 kcal Electronic energy + Delta-G solvation = -29530.527084 eV Core-core repulsion = 25294.049777 eV Total energy + Delta-G solvation = -4236.477307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99014 -39.13794 -38.56138 -37.87072 -37.44860 -35.14662 -33.89643 -31.45114 -31.07232 -29.79119 -29.30487 -28.00458 -27.24025 -26.73660 -26.18558 -24.22569 -22.91729 -22.09126 -20.64650 -19.36063 -18.56155 -17.91420 -17.37772 -17.32265 -16.66383 -16.37088 -16.19409 -15.66069 -15.39992 -15.12375 -14.86115 -14.85209 -14.64787 -14.45402 -14.18192 -13.82792 -13.57514 -13.41074 -13.07593 -12.62848 -12.51046 -12.26821 -12.10291 -11.92605 -11.89953 -11.77521 -11.70683 -11.66422 -11.51183 -11.24948 -11.03443 -10.76248 -10.61191 -10.46314 -10.23672 -10.04791 -9.52419 -8.50393 -8.32663 -8.29316 -8.13620 -7.98705 -6.44045 -3.85006 0.99802 1.24033 2.66529 3.18181 3.24088 3.26953 3.28784 3.48468 3.81968 3.88172 4.04752 4.26447 4.47135 4.76654 4.85729 4.89674 4.93491 5.05105 5.06384 5.14801 5.17946 5.22325 5.23949 5.25477 5.27787 5.31528 5.32845 5.43939 5.49997 5.58181 5.67265 5.72631 5.83366 5.93068 5.99670 6.04966 6.20959 6.24929 6.30107 6.41091 6.88450 7.09729 7.18345 7.52689 7.58102 7.59844 8.03534 8.58586 9.15292 9.51648 10.02895 10.73624 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.002407 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.974201 B =11631.954791 C =12420.072287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.146 3.854 4 C -0.228 4.228 5 C -0.010 4.010 6 C 0.122 3.878 7 H 0.053 0.947 8 C -0.135 4.135 9 N -0.661 5.661 10 C 0.050 3.950 11 C 0.441 3.559 12 O -0.584 6.584 13 N -0.563 5.563 14 C -0.300 4.300 15 H 0.102 0.898 16 C 0.023 3.977 17 N -0.902 5.902 18 Si 0.931 3.069 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C -0.209 4.209 23 C 0.149 3.851 24 O -0.305 6.305 25 C 0.023 3.977 26 C 0.022 3.978 27 O -0.314 6.314 28 C 0.035 3.965 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.352 0.648 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.150 0.850 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.044 0.956 46 H 0.089 0.911 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 -19.787 9.541 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.099 3.901 4 C -0.248 4.248 5 C -0.011 4.011 6 C 0.012 3.988 7 H 0.071 0.929 8 C -0.193 4.193 9 N -0.294 5.294 10 C -0.083 4.083 11 C 0.227 3.773 12 O -0.468 6.468 13 N -0.200 5.200 14 C -0.430 4.430 15 H 0.120 0.880 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.228 4.228 23 C 0.102 3.898 24 O -0.218 6.218 25 C -0.072 4.072 26 C -0.023 4.023 27 O -0.230 6.230 28 C -0.059 4.059 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.172 0.828 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.168 0.832 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.218 -19.729 9.975 22.340 hybrid contribution -1.175 0.687 -1.375 1.935 sum 2.043 -19.041 8.600 20.993 Atomic orbital electron populations 1.23112 0.78241 1.04001 1.01624 1.86135 1.21319 1.25984 1.88347 1.18867 0.90538 0.84798 0.95848 1.20913 1.00071 0.91005 1.12779 1.19549 0.93264 0.93824 0.94478 1.20507 0.94903 0.87896 0.95520 0.92902 1.21783 1.02882 1.00566 0.94022 1.60245 1.28058 1.17418 1.23702 1.21740 0.93463 0.94679 0.98414 1.19769 0.87917 0.84568 0.85065 1.90515 1.15139 1.75641 1.65501 1.41854 1.10792 1.25500 1.41820 1.19650 0.95498 1.05885 1.21920 0.87981 1.25260 0.95466 0.98591 0.98583 1.69606 1.05802 1.34300 1.44625 0.85921 0.78549 0.79716 0.80051 1.19911 1.20962 1.19866 1.21113 0.93960 0.97929 1.09821 1.18992 0.83208 0.92512 0.95047 1.86114 1.16476 1.31176 1.88027 1.23184 0.99025 0.82606 1.02393 1.16955 0.86357 0.84745 1.14246 1.86147 1.70111 1.38008 1.28748 1.22962 0.99446 0.98428 0.85106 0.92410 0.92481 0.88135 0.84888 0.91641 0.91963 0.92642 0.82817 0.93799 0.89432 0.77459 0.91804 0.83248 0.91725 0.92180 0.88119 0.93693 0.89211 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.54 10.28 -34.33 -0.35 -3.90 16 3 C 0.15 1.85 6.70 -39.15 -0.26 1.59 16 4 C -0.23 -2.62 8.65 -39.42 -0.34 -2.96 16 5 C -0.01 -0.13 4.72 -104.63 -0.49 -0.62 16 6 C 0.12 1.51 2.82 -68.86 -0.19 1.31 16 7 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 8 C -0.13 -1.54 9.39 37.16 0.35 -1.19 16 9 N -0.66 -10.33 5.31 -109.22 -0.58 -10.91 16 10 C 0.05 0.85 5.97 -4.98 -0.03 0.82 16 11 C 0.44 10.21 7.82 -10.99 -0.09 10.12 16 12 O -0.58 -15.51 15.78 5.55 0.09 -15.42 16 13 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 14 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 15 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 18 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.21 -2.74 7.99 -39.42 -0.31 -3.06 16 23 C 0.15 2.04 6.70 -39.15 -0.26 1.78 16 24 O -0.31 -4.01 10.28 -34.30 -0.35 -4.36 16 25 C 0.02 0.23 9.81 101.05 0.99 1.22 16 26 C 0.02 0.31 5.75 -39.03 -0.22 0.09 16 27 O -0.31 -4.45 9.98 -45.29 -0.45 -4.90 16 28 C 0.04 0.38 11.13 101.05 1.13 1.51 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.13 1.23 6.27 -52.49 -0.33 0.90 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.35 5.87 7.68 -39.29 -0.30 5.57 16 37 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 38 H 0.09 1.37 7.44 -51.93 -0.39 0.99 16 39 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 41 H 0.15 1.98 5.94 -52.49 -0.31 1.67 16 42 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 43 H 0.06 0.56 7.67 -51.93 -0.40 0.17 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -32.95 394.76 -5.96 -38.91 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -6.91 Total: 12.65 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 1.01 Total: 3.86 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.09 Total: -48.66 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.07 Total: -28.58 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.95 -5.96 -38.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341369911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.241 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds