Wall clock time and date at job start Tue Mar 31 2020 21:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36001 * 117.00040 * 2 1 4 4 C 1.38671 * 120.03987 * 359.97438 * 3 2 1 5 5 C 1.38230 * 120.08443 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.90971 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47278 * 340.00086 * 6 5 4 8 8 C 1.52999 * 109.47017 * 100.00238 * 6 5 4 9 9 N 1.46905 * 109.47161 * 220.00163 * 6 5 4 10 10 C 1.46901 * 110.99870 * 155.00107 * 9 6 5 11 11 C 1.50697 * 109.46943 * 180.02562 * 10 9 6 12 12 O 1.21292 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.37102 * 120.00095 * 179.97438 * 13 11 10 15 15 H 1.08004 * 119.99386 * 359.97438 * 14 13 11 16 16 C 1.38941 * 120.00393 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99786 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00292 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47191 * 60.00031 * 18 16 14 20 20 H 1.48504 * 109.47312 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47299 * 300.00334 * 18 16 14 22 22 C 1.38234 * 120.18163 * 0.23622 * 5 4 3 23 23 C 1.38669 * 120.08793 * 359.49040 * 22 5 4 24 24 O 1.35990 * 120.04832 * 180.25654 * 23 22 5 25 25 C 1.42903 * 116.99754 * 0.27147 * 24 23 22 26 26 C 1.38978 * 120.04729 * 179.97438 * 3 2 1 27 27 O 1.36091 * 120.08885 * 0.03394 * 26 3 2 28 28 C 1.42899 * 116.99978 * 90.00453 * 27 26 3 29 29 H 1.08998 * 109.47036 * 299.99379 * 1 2 3 30 30 H 1.08997 * 109.47297 * 60.00211 * 1 2 3 31 31 H 1.09001 * 109.46743 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.95792 * 359.97438 * 4 3 2 33 33 H 1.08997 * 109.47624 * 60.00343 * 8 6 5 34 34 H 1.09006 * 109.47163 * 180.02562 * 8 6 5 35 35 H 1.08999 * 109.47123 * 299.99777 * 8 6 5 36 36 H 1.00901 * 110.99869 * 31.04818 * 9 6 5 37 37 H 1.09004 * 109.47031 * 299.99620 * 10 9 6 38 38 H 1.08995 * 109.47111 * 59.99900 * 10 9 6 39 39 H 0.96997 * 120.00713 * 359.97438 * 13 11 10 40 40 H 0.97001 * 119.99428 * 179.97438 * 17 16 14 41 41 H 1.07997 * 119.95487 * 179.74133 * 22 5 4 42 42 H 1.09000 * 109.47527 * 300.00074 * 25 24 23 43 43 H 1.08997 * 109.47350 * 60.00259 * 25 24 23 44 44 H 1.09002 * 109.47253 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47057 * 60.00007 * 28 27 26 46 46 H 1.08996 * 109.47638 * 180.02562 * 28 27 26 47 47 H 1.09005 * 109.47444 * 300.00269 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 -0.0005 5 6 1.9186 3.6074 -0.0011 6 6 1.0949 4.8693 -0.0022 7 1 0.0877 4.6455 -0.3540 8 6 1.0253 5.4343 1.4179 9 7 1.7160 5.8588 -0.8929 10 6 0.7204 6.8174 -1.3906 11 6 1.3929 7.8139 -2.2993 12 8 2.5845 7.7337 -2.5110 13 7 0.6705 8.7948 -2.8758 14 6 1.2824 9.7018 -3.7020 15 1 2.3435 9.6303 -3.8905 16 6 0.5376 10.7127 -4.2968 17 7 -0.7533 10.7998 -4.0670 18 14 1.3715 11.9488 -5.4220 19 1 1.9893 11.2361 -6.5690 20 1 0.3651 12.9181 -5.9249 21 1 2.4233 12.6753 -4.6662 22 6 3.2987 3.6852 -0.0060 23 6 4.0603 2.5264 0.0002 24 8 5.4180 2.6039 0.0007 25 6 5.9931 3.9121 0.0005 26 6 3.4342 1.2856 0.0005 27 8 4.1781 0.1461 0.0004 28 6 4.5333 -0.3966 -1.2730 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2135 2.3187 -0.0014 33 1 2.0324 5.6582 1.7697 34 1 0.4291 6.3468 1.4172 35 1 0.5644 4.7002 2.0788 36 1 2.1961 5.4067 -1.6567 37 1 -0.0519 6.2842 -1.9451 38 1 0.2674 7.3408 -0.5487 39 1 -0.2824 8.8592 -2.7062 40 1 -1.2732 11.5058 -4.4820 41 1 3.7844 4.6498 -0.0106 42 1 5.6693 4.4513 -0.8897 43 1 5.6687 4.4518 0.8902 44 1 7.0801 3.8312 0.0004 45 1 5.1187 0.3353 -1.8294 46 1 5.1235 -1.3018 -1.1304 47 1 3.6282 -0.6376 -1.8305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341369911.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:25 Heat of formation + Delta-G solvation = -138.602163 kcal Electronic energy + Delta-G solvation = -29531.543892 eV Core-core repulsion = 25294.049777 eV Total energy + Delta-G solvation = -4237.494115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.91570 -40.21060 -40.00430 -38.94935 -38.52653 -36.34976 -35.78561 -33.28903 -32.37603 -30.70520 -30.24767 -28.76422 -28.12434 -28.03955 -27.24675 -25.88515 -23.96386 -23.01078 -21.62255 -21.09735 -19.94201 -19.51579 -18.38200 -18.27019 -17.69714 -17.51356 -17.25706 -16.94149 -16.46695 -16.41430 -16.04690 -15.98362 -15.73602 -15.58979 -15.51258 -15.31032 -14.84796 -14.53859 -14.06822 -13.93932 -13.53119 -13.43016 -13.34552 -13.13476 -13.01100 -12.88427 -12.80302 -12.65415 -12.47960 -12.42810 -12.42679 -12.24010 -12.12606 -11.70822 -11.50193 -11.48973 -10.99513 -10.34024 -10.01004 -9.38398 -9.28353 -9.21729 -8.46310 -5.94821 0.03508 0.29670 1.39754 1.41872 1.52436 1.84787 2.06325 2.27966 2.34576 2.66410 2.86857 2.92125 3.21258 3.48482 3.50287 3.96670 3.97956 4.16238 4.23294 4.29665 4.31366 4.35633 4.36558 4.40624 4.45217 4.46125 4.46324 4.47622 4.52969 4.61203 4.71408 4.74275 4.75196 4.81042 4.92540 5.05860 5.12061 5.34462 5.37810 5.40531 5.42771 5.90256 6.00986 6.10533 6.23989 6.34296 6.60749 6.64915 7.13147 7.57190 8.12408 8.70871 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.002407 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.974201 B =11631.954791 C =12420.072287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.143 3.857 4 C -0.220 4.220 5 C -0.014 4.014 6 C 0.126 3.874 7 H 0.074 0.926 8 C -0.133 4.133 9 N -0.672 5.672 10 C 0.064 3.936 11 C 0.439 3.561 12 O -0.623 6.623 13 N -0.573 5.573 14 C -0.334 4.334 15 H 0.078 0.922 16 C -0.012 4.012 17 N -0.920 5.920 18 Si 0.991 3.009 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.272 1.272 22 C -0.215 4.215 23 C 0.136 3.864 24 O -0.320 6.320 25 C 0.020 3.980 26 C 0.001 3.999 27 O -0.334 6.334 28 C 0.033 3.967 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.343 0.657 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.142 0.858 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.124 0.876 45 H 0.040 0.960 46 H 0.112 0.888 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 -20.355 9.876 22.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.096 3.904 4 C -0.239 4.239 5 C -0.014 4.014 6 C 0.017 3.983 7 H 0.092 0.908 8 C -0.191 4.191 9 N -0.305 5.305 10 C -0.068 4.068 11 C 0.226 3.774 12 O -0.509 6.509 13 N -0.210 5.210 14 C -0.463 4.463 15 H 0.096 0.904 16 C -0.212 4.212 17 N -0.561 5.561 18 Si 0.815 3.185 19 H -0.197 1.197 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.235 4.235 23 C 0.090 3.910 24 O -0.233 6.233 25 C -0.074 4.074 26 C -0.044 4.044 27 O -0.251 6.251 28 C -0.061 4.061 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.178 0.822 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.163 0.837 37 H 0.086 0.914 38 H 0.126 0.874 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.160 0.840 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.142 0.858 45 H 0.059 0.941 46 H 0.130 0.870 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.702 -20.310 10.330 22.850 hybrid contribution -0.710 0.762 -1.446 1.782 sum 0.992 -19.549 8.883 21.495 Atomic orbital electron populations 1.23444 0.75971 1.05859 1.02631 1.86124 1.23680 1.25545 1.88103 1.18946 0.90278 0.85673 0.95463 1.21117 1.01295 0.90010 1.11462 1.19602 0.92904 0.94312 0.94625 1.20574 0.95456 0.87013 0.95264 0.90847 1.21784 1.02403 1.01224 0.93643 1.60243 1.28265 1.18367 1.23625 1.21607 0.93488 0.93769 0.97931 1.20848 0.87554 0.84483 0.84471 1.90488 1.17150 1.76562 1.66693 1.41920 1.11039 1.25922 1.42164 1.19618 0.94911 1.07802 1.23985 0.90354 1.26009 0.96075 0.99693 0.99417 1.69664 1.06551 1.34853 1.45042 0.85021 0.77842 0.77567 0.78117 1.19726 1.19511 1.19752 1.21081 0.94519 0.97418 1.10438 1.19130 0.83494 0.92764 0.95628 1.86086 1.16493 1.32646 1.88119 1.23343 1.00247 0.81631 1.02167 1.17274 0.87259 0.84809 1.15083 1.86092 1.70400 1.38198 1.30393 1.23106 0.99819 0.99022 0.84148 0.91188 0.91542 0.86055 0.82184 0.92904 0.91804 0.90565 0.83740 0.91361 0.87406 0.76940 0.91304 0.84024 0.92533 0.91785 0.85792 0.94127 0.86990 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.97 10.28 -79.62 -0.82 -7.79 16 3 C 0.14 3.48 6.70 22.55 0.15 3.63 16 4 C -0.22 -4.58 8.65 22.37 0.19 -4.39 16 5 C -0.01 -0.32 4.72 -19.87 -0.09 -0.41 16 6 C 0.13 2.84 2.82 44.17 0.12 2.96 16 7 H 0.07 1.40 7.66 -2.38 -0.02 1.38 16 8 C -0.13 -2.72 9.39 71.98 0.68 -2.04 16 9 N -0.67 -20.23 5.31 -499.46 -2.65 -22.88 16 10 C 0.06 2.09 5.97 85.56 0.51 2.60 16 11 C 0.44 20.33 7.82 87.66 0.69 21.02 16 12 O -0.62 -33.77 15.78 -3.07 -0.05 -33.81 16 13 N -0.57 -28.85 5.29 -306.99 -1.62 -30.48 16 14 C -0.33 -18.74 9.68 84.04 0.81 -17.92 16 15 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 16 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 17 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 18 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 C -0.22 -5.66 7.99 22.37 0.18 -5.48 16 23 C 0.14 3.80 6.70 22.55 0.15 3.95 16 24 O -0.32 -8.65 10.28 -79.49 -0.82 -9.46 16 25 C 0.02 0.42 9.81 113.37 1.11 1.53 16 26 C 0.00 0.03 5.75 22.63 0.13 0.16 16 27 O -0.33 -9.52 9.98 -70.44 -0.70 -10.22 16 28 C 0.03 0.71 11.13 113.37 1.26 1.97 16 29 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 30 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 31 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.16 2.36 6.27 -2.91 -0.02 2.35 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.29 7.45 -2.38 -0.02 1.27 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.34 11.36 7.68 -89.69 -0.69 10.67 16 37 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 38 H 0.11 3.11 7.44 -2.39 -0.02 3.09 16 39 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 40 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.14 3.87 5.94 -2.91 -0.02 3.86 16 42 H 0.06 1.24 7.65 -2.39 -0.02 1.22 16 43 H 0.06 1.24 7.67 -2.39 -0.02 1.22 16 44 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -71.95 394.76 2.72 -69.23 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -0.41 Total: 40.98 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 7.47 Total: 8.68 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.99 Total: -102.17 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -2.39 Total: -61.28 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -71.95 2.72 -69.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341369911.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.371 kcal (2) G-P(sol) polarization free energy of solvation -71.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds