Wall clock time and date at job start Tue Mar 31 2020 21:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99661 * 2 1 4 4 C 1.38664 * 120.04502 * 0.02562 * 3 2 1 5 5 C 1.38236 * 120.08631 * 179.97438 * 4 3 2 6 6 C 1.50692 * 119.90821 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47826 * 20.00024 * 6 5 4 8 8 C 1.53009 * 109.47074 * 260.00083 * 6 5 4 9 9 N 1.46495 * 109.47295 * 140.00428 * 6 5 4 10 10 C 1.34774 * 120.00686 * 204.99880 * 9 6 5 11 11 O 1.21596 * 119.99564 * 359.97438 * 10 9 6 12 12 N 1.34776 * 120.00717 * 179.97438 * 10 9 6 13 13 C 1.46498 * 120.00101 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46869 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00498 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00042 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99843 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00306 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46787 * 60.00334 * 18 16 14 20 20 H 1.48495 * 109.47365 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47422 * 300.00812 * 18 16 14 22 22 C 1.38230 * 120.17993 * 0.02562 * 5 4 3 23 23 C 1.38667 * 120.08894 * 359.97438 * 22 5 4 24 24 O 1.35996 * 120.04442 * 180.02562 * 23 22 5 25 25 C 1.42898 * 117.00017 * 359.97438 * 24 23 22 26 26 C 1.38977 * 120.03955 * 179.72732 * 3 2 1 27 27 O 1.36088 * 120.09253 * 359.97306 * 26 3 2 28 28 C 1.42905 * 116.99815 * 90.00138 * 27 26 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47043 * 300.00222 * 1 2 3 31 31 H 1.08999 * 109.47144 * 59.99821 * 1 2 3 32 32 H 1.07991 * 119.95903 * 0.02562 * 4 3 2 33 33 H 1.08991 * 109.46993 * 300.00322 * 8 6 5 34 34 H 1.09005 * 109.46816 * 60.00396 * 8 6 5 35 35 H 1.09000 * 109.47052 * 179.97438 * 8 6 5 36 36 H 0.97006 * 120.00055 * 24.99438 * 9 6 5 37 37 H 0.97004 * 119.99680 * 0.02562 * 12 10 9 38 38 H 1.08999 * 109.47105 * 300.00025 * 13 12 10 39 39 H 1.08997 * 109.47342 * 60.00403 * 13 12 10 40 40 H 0.96999 * 119.99807 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.95522 * 179.97438 * 22 5 4 42 42 H 1.08998 * 109.46928 * 300.00147 * 25 24 23 43 43 H 1.09002 * 109.46750 * 60.00298 * 25 24 23 44 44 H 1.09004 * 109.46644 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47217 * 180.02562 * 28 27 26 46 46 H 1.08997 * 109.47491 * 300.00287 * 28 27 26 47 47 H 1.09004 * 109.46914 * 59.99909 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 0.0005 5 6 1.9186 3.6075 0.0011 6 6 1.0949 4.8694 0.0011 7 1 0.0875 4.6458 0.3521 8 6 1.0264 5.4337 -1.4195 9 7 1.7136 5.8565 0.8893 10 6 0.9615 6.8247 1.4488 11 8 -0.2308 6.8792 1.2161 12 7 1.5306 7.7326 2.2664 13 6 0.7130 8.7853 2.8741 14 6 1.5834 9.6622 3.7369 15 1 2.6401 9.4563 3.8235 16 6 1.0311 10.7282 4.4149 17 7 -0.2556 10.9794 4.3091 18 14 2.1098 11.8148 5.4849 19 1 3.1724 12.4319 4.6510 20 1 1.2811 12.8820 6.1009 21 1 2.7336 10.9941 6.5537 22 6 3.2987 3.6853 0.0005 23 6 4.0603 2.5265 0.0000 24 8 5.4181 2.6040 0.0000 25 6 5.9932 3.9122 0.0000 26 6 3.4342 1.2856 0.0057 27 8 4.1781 0.1461 0.0119 28 6 4.5381 -0.4005 -1.2585 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2136 2.3188 0.0014 33 1 2.0337 5.6573 -1.7705 34 1 0.5659 4.6992 -2.0804 35 1 0.4302 6.3462 -1.4196 36 1 2.6648 5.8132 1.0747 37 1 2.4818 7.6893 2.4518 38 1 0.2548 9.3879 2.0898 39 1 -0.0667 8.3320 3.4863 40 1 -0.6442 11.7290 4.7864 41 1 3.7845 4.6499 0.0005 42 1 5.6690 4.4515 -0.8899 43 1 5.6690 4.4515 0.8901 44 1 7.0802 3.8311 -0.0004 45 1 5.1278 -1.3053 -1.1108 46 1 3.6352 -0.6432 -1.8188 47 1 5.1257 0.3298 -1.8149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426428530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:30 Heat of formation + Delta-G solvation = -113.859589 kcal Electronic energy + Delta-G solvation = -29542.185202 eV Core-core repulsion = 25305.764005 eV Total energy + Delta-G solvation = -4236.421197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16030 -39.43592 -39.26696 -37.97767 -37.31348 -34.75726 -33.99032 -32.40381 -31.03607 -29.93281 -29.40485 -28.13497 -27.36774 -26.97639 -26.54229 -23.79841 -22.68431 -22.29388 -21.13830 -20.07849 -18.93355 -18.12505 -17.50144 -17.35173 -16.75008 -16.49210 -16.17143 -15.79304 -15.64069 -15.24966 -15.02559 -14.84627 -14.77179 -14.64130 -14.48059 -13.75186 -13.68074 -13.22073 -13.16190 -12.96639 -12.57813 -12.42994 -12.23157 -11.96850 -11.92506 -11.87425 -11.81405 -11.79902 -11.48296 -11.00384 -10.93588 -10.88177 -10.77322 -10.30543 -10.16741 -9.43926 -9.38801 -8.85893 -8.70578 -8.45913 -8.43884 -7.78288 -6.15454 -4.22099 0.85481 1.08359 2.53138 3.09345 3.25511 3.29175 3.31105 3.33554 3.40813 3.67454 3.92274 4.29987 4.32710 4.64848 4.71706 4.81629 4.82892 4.88996 4.90297 4.93839 5.05857 5.13265 5.17513 5.18393 5.20517 5.22520 5.24750 5.30427 5.34275 5.46638 5.57813 5.76043 5.85915 5.88918 6.06638 6.18751 6.28415 6.75878 6.82452 6.96593 7.09497 7.45779 7.50107 7.53812 7.56844 7.89355 8.03437 8.75505 8.92368 9.31607 9.47217 10.94714 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.002418 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.478739 B =11576.105800 C =12565.587078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.153 3.847 4 C -0.222 4.222 5 C -0.007 4.007 6 C 0.202 3.798 7 H 0.099 0.901 8 C -0.157 4.157 9 N -0.752 5.752 10 C 0.695 3.305 11 O -0.599 6.599 12 N -0.729 5.729 13 C 0.268 3.732 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.226 4.226 23 C 0.153 3.847 24 O -0.303 6.303 25 C 0.023 3.977 26 C 0.023 3.977 27 O -0.312 6.312 28 C 0.035 3.965 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.389 0.611 37 H 0.386 0.614 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.266 0.734 41 H 0.136 0.864 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.135 -21.610 -13.547 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.106 3.894 4 C -0.241 4.241 5 C -0.008 4.008 6 C 0.096 3.904 7 H 0.117 0.883 8 C -0.216 4.216 9 N -0.410 5.410 10 C 0.395 3.605 11 O -0.478 6.478 12 N -0.381 5.381 13 C 0.147 3.853 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.245 4.245 23 C 0.107 3.893 24 O -0.216 6.216 25 C -0.072 4.072 26 C -0.022 4.022 27 O -0.228 6.228 28 C -0.059 4.059 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.224 0.776 37 H 0.218 0.782 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.153 0.847 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.062 0.938 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.132 -21.819 -13.507 26.919 hybrid contribution 1.114 1.112 0.556 1.670 sum 9.246 -20.707 -12.951 26.115 Atomic orbital electron populations 1.23164 0.77904 1.04200 1.01903 1.86143 1.21597 1.25791 1.88095 1.18901 0.90539 0.84932 0.95025 1.20911 1.00493 0.90718 1.11969 1.19621 0.92997 0.94333 0.93875 1.19529 0.96413 0.83890 0.90612 0.88335 1.22185 1.02355 1.02086 0.94950 1.45294 1.11342 1.31781 1.52545 1.16120 0.85297 0.79692 0.79428 1.90870 1.13686 1.76409 1.66863 1.45724 1.12290 1.31127 1.48922 1.18975 0.90476 0.83389 0.92501 1.21186 0.95031 1.12748 1.29120 0.92037 1.24944 0.95155 0.97319 0.96600 1.69971 1.10894 1.29355 1.42052 0.86472 0.80081 0.79916 0.80403 1.20111 1.21074 1.20095 1.20846 0.93946 0.97341 1.12403 1.18909 0.83011 0.92475 0.94925 1.86144 1.16484 1.30907 1.88049 1.23177 0.99356 0.82831 1.01864 1.16945 0.86386 0.84733 1.14151 1.86174 1.70007 1.37868 1.28794 1.22968 0.99409 0.98390 0.85160 0.87992 0.92093 0.92332 0.84359 0.92515 0.91845 0.90953 0.77647 0.78231 0.95728 0.95731 0.92408 0.84659 0.92357 0.92062 0.87913 0.89136 0.93826 0.93801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.33 10.28 -34.34 -0.35 -3.68 16 3 C 0.15 1.81 6.70 -39.15 -0.26 1.54 16 4 C -0.22 -2.42 8.65 -39.42 -0.34 -2.76 16 5 C -0.01 -0.08 4.95 -104.63 -0.52 -0.60 16 6 C 0.20 2.62 2.77 -69.08 -0.19 2.42 16 7 H 0.10 1.44 7.43 -51.93 -0.39 1.05 16 8 C -0.16 -1.85 9.46 37.16 0.35 -1.50 16 9 N -0.75 -11.07 5.03 -59.81 -0.30 -11.37 16 10 C 0.69 14.06 8.53 -86.92 -0.74 13.32 16 11 O -0.60 -14.57 16.01 5.28 0.08 -14.49 16 12 N -0.73 -15.44 5.55 -66.42 -0.37 -15.81 16 13 C 0.27 7.13 5.43 -5.20 -0.03 7.10 16 14 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 15 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 18 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.23 -2.43 8.04 -39.43 -0.32 -2.75 16 23 C 0.15 1.81 6.70 -39.15 -0.26 1.54 16 24 O -0.30 -3.33 10.28 -34.31 -0.35 -3.68 16 25 C 0.02 0.16 9.81 101.05 0.99 1.15 16 26 C 0.02 0.30 5.75 -39.03 -0.22 0.07 16 27 O -0.31 -4.06 9.99 -45.27 -0.45 -4.51 16 28 C 0.04 0.33 11.13 101.05 1.13 1.45 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 32 H 0.14 1.27 6.27 -52.49 -0.33 0.94 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.39 4.71 6.88 -40.82 -0.28 4.43 16 37 H 0.39 6.96 8.34 -40.82 -0.34 6.62 16 38 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.14 1.22 5.14 -52.49 -0.27 0.95 16 42 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 43 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -35.22 395.78 -6.86 -42.09 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.96 Total: 6.24 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 0.16 Total: 8.80 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.07 Total: -52.53 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.07 Total: -26.36 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.22 -6.86 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426428530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.773 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds