Wall clock time and date at job start Tue Mar 31 2020 21:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99661 * 2 1 4 4 C 1.38664 * 120.04502 * 0.02562 * 3 2 1 5 5 C 1.38236 * 120.08631 * 179.97438 * 4 3 2 6 6 C 1.50692 * 119.90821 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47826 * 20.00024 * 6 5 4 8 8 C 1.53009 * 109.47074 * 260.00083 * 6 5 4 9 9 N 1.46495 * 109.47295 * 140.00428 * 6 5 4 10 10 C 1.34774 * 120.00686 * 204.99880 * 9 6 5 11 11 O 1.21596 * 119.99564 * 359.97438 * 10 9 6 12 12 N 1.34776 * 120.00717 * 179.97438 * 10 9 6 13 13 C 1.46498 * 120.00101 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.46869 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00498 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00042 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99843 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00306 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46787 * 60.00334 * 18 16 14 20 20 H 1.48495 * 109.47365 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47422 * 300.00812 * 18 16 14 22 22 C 1.38230 * 120.17993 * 0.02562 * 5 4 3 23 23 C 1.38667 * 120.08894 * 359.97438 * 22 5 4 24 24 O 1.35996 * 120.04442 * 180.02562 * 23 22 5 25 25 C 1.42898 * 117.00017 * 359.97438 * 24 23 22 26 26 C 1.38977 * 120.03955 * 179.72732 * 3 2 1 27 27 O 1.36088 * 120.09253 * 359.97306 * 26 3 2 28 28 C 1.42905 * 116.99815 * 90.00138 * 27 26 3 29 29 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47043 * 300.00222 * 1 2 3 31 31 H 1.08999 * 109.47144 * 59.99821 * 1 2 3 32 32 H 1.07991 * 119.95903 * 0.02562 * 4 3 2 33 33 H 1.08991 * 109.46993 * 300.00322 * 8 6 5 34 34 H 1.09005 * 109.46816 * 60.00396 * 8 6 5 35 35 H 1.09000 * 109.47052 * 179.97438 * 8 6 5 36 36 H 0.97006 * 120.00055 * 24.99438 * 9 6 5 37 37 H 0.97004 * 119.99680 * 0.02562 * 12 10 9 38 38 H 1.08999 * 109.47105 * 300.00025 * 13 12 10 39 39 H 1.08997 * 109.47342 * 60.00403 * 13 12 10 40 40 H 0.96999 * 119.99807 * 179.97438 * 17 16 14 41 41 H 1.08000 * 119.95522 * 179.97438 * 22 5 4 42 42 H 1.08998 * 109.46928 * 300.00147 * 25 24 23 43 43 H 1.09002 * 109.46750 * 60.00298 * 25 24 23 44 44 H 1.09004 * 109.46644 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47217 * 180.02562 * 28 27 26 46 46 H 1.08997 * 109.47491 * 300.00287 * 28 27 26 47 47 H 1.09004 * 109.46914 * 59.99909 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 0.0005 5 6 1.9186 3.6075 0.0011 6 6 1.0949 4.8694 0.0011 7 1 0.0875 4.6458 0.3521 8 6 1.0264 5.4337 -1.4195 9 7 1.7136 5.8565 0.8893 10 6 0.9615 6.8247 1.4488 11 8 -0.2308 6.8792 1.2161 12 7 1.5306 7.7326 2.2664 13 6 0.7130 8.7853 2.8741 14 6 1.5834 9.6622 3.7369 15 1 2.6401 9.4563 3.8235 16 6 1.0311 10.7282 4.4149 17 7 -0.2556 10.9794 4.3091 18 14 2.1098 11.8148 5.4849 19 1 3.1724 12.4319 4.6510 20 1 1.2811 12.8820 6.1009 21 1 2.7336 10.9941 6.5537 22 6 3.2987 3.6853 0.0005 23 6 4.0603 2.5265 0.0000 24 8 5.4181 2.6040 0.0000 25 6 5.9932 3.9122 0.0000 26 6 3.4342 1.2856 0.0057 27 8 4.1781 0.1461 0.0119 28 6 4.5381 -0.4005 -1.2585 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2136 2.3188 0.0014 33 1 2.0337 5.6573 -1.7705 34 1 0.5659 4.6992 -2.0804 35 1 0.4302 6.3462 -1.4196 36 1 2.6648 5.8132 1.0747 37 1 2.4818 7.6893 2.4518 38 1 0.2548 9.3879 2.0898 39 1 -0.0667 8.3320 3.4863 40 1 -0.6442 11.7290 4.7864 41 1 3.7845 4.6499 0.0005 42 1 5.6690 4.4515 -0.8899 43 1 5.6690 4.4515 0.8901 44 1 7.0802 3.8311 -0.0004 45 1 5.1278 -1.3053 -1.1108 46 1 3.6352 -0.6432 -1.8188 47 1 5.1257 0.3298 -1.8149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426428530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:29 Heat of formation + Delta-G solvation = -139.493185 kcal Electronic energy + Delta-G solvation = -29543.296758 eV Core-core repulsion = 25305.764005 eV Total energy + Delta-G solvation = -4237.532753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.01825 -40.93745 -40.02545 -38.86334 -38.33513 -36.23326 -35.62339 -34.36950 -32.25683 -30.74628 -30.36764 -28.95159 -28.73070 -28.02783 -27.30597 -25.13043 -24.23388 -23.17745 -22.32158 -21.54612 -20.11723 -19.44853 -18.39546 -18.28179 -17.94139 -17.57941 -17.26444 -17.13544 -16.51358 -16.46650 -16.31233 -16.03476 -15.78150 -15.75634 -15.49704 -15.13721 -14.76239 -14.68648 -14.17607 -13.99966 -13.97457 -13.70024 -13.32342 -13.21183 -13.02223 -12.88483 -12.71111 -12.66674 -12.50090 -12.42883 -12.39122 -12.22095 -11.85650 -11.59213 -11.47991 -11.22209 -10.98832 -10.77576 -10.31007 -9.62197 -9.30917 -9.26872 -8.26667 -6.42807 -0.02957 0.24629 1.44384 1.48591 1.56460 1.78919 1.88196 2.25066 2.34787 2.41409 2.66006 2.83965 3.08282 3.34905 3.52191 3.87763 3.91757 4.05036 4.21495 4.24923 4.30107 4.37401 4.38517 4.41148 4.43234 4.48936 4.49014 4.65672 4.73500 4.75963 4.78769 4.84805 4.89848 5.05267 5.10033 5.21993 5.26649 5.29794 5.31342 5.50497 5.58479 5.69528 5.87039 6.00057 6.22933 6.24064 6.64172 6.68651 7.25854 7.30744 7.73009 8.85329 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.002418 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.478739 B =11576.105800 C =12565.587078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.319 6.319 3 C 0.146 3.854 4 C -0.221 4.221 5 C -0.011 4.011 6 C 0.203 3.797 7 H 0.081 0.919 8 C -0.152 4.152 9 N -0.728 5.728 10 C 0.695 3.305 11 O -0.643 6.643 12 N -0.723 5.723 13 C 0.287 3.713 14 C -0.555 4.555 15 H 0.083 0.917 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.984 3.016 19 H -0.261 1.261 20 H -0.286 1.286 21 H -0.263 1.263 22 C -0.221 4.221 23 C 0.148 3.852 24 O -0.319 6.319 25 C 0.012 3.988 26 C 0.004 3.996 27 O -0.335 6.335 28 C 0.033 3.967 29 H 0.123 0.877 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.406 0.594 37 H 0.404 0.596 38 H -0.013 1.013 39 H -0.015 1.015 40 H 0.268 0.732 41 H 0.154 0.846 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.046 0.954 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.451 -22.007 -13.745 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.232 6.232 3 C 0.100 3.900 4 C -0.240 4.240 5 C -0.012 4.012 6 C 0.097 3.903 7 H 0.099 0.901 8 C -0.210 4.210 9 N -0.386 5.386 10 C 0.395 3.605 11 O -0.525 6.525 12 N -0.377 5.377 13 C 0.163 3.837 14 C -0.593 4.593 15 H 0.101 0.899 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.807 3.193 19 H -0.186 1.186 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.240 4.240 23 C 0.101 3.899 24 O -0.232 6.232 25 C -0.082 4.082 26 C -0.041 4.041 27 O -0.252 6.252 28 C -0.061 4.061 29 H 0.141 0.859 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.243 0.757 37 H 0.239 0.761 38 H 0.005 0.995 39 H 0.003 0.997 40 H 0.077 0.923 41 H 0.171 0.829 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.065 0.935 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.520 -22.274 -13.739 28.205 hybrid contribution 0.387 1.103 0.545 1.289 sum 10.907 -21.171 -13.194 27.226 Atomic orbital electron populations 1.23440 0.76047 1.05894 1.02541 1.86127 1.23556 1.25571 1.87992 1.18970 0.90520 0.85440 0.95117 1.21038 1.01241 0.90325 1.11390 1.19423 0.93130 0.93492 0.95131 1.19592 0.95798 0.84114 0.90748 0.90061 1.22128 1.03060 1.01346 0.94459 1.45061 1.11803 1.30267 1.51478 1.16227 0.84938 0.80180 0.79153 1.90843 1.15951 1.77553 1.68182 1.45305 1.12724 1.30495 1.49173 1.18393 0.90335 0.83959 0.90981 1.21571 0.95999 1.12777 1.28908 0.89862 1.26047 0.96526 0.98962 0.98026 1.70136 1.13229 1.30203 1.43306 0.85215 0.78040 0.77571 0.78432 1.18597 1.21168 1.18798 1.20951 0.93516 0.97899 1.11651 1.18963 0.83586 0.92373 0.94931 1.86133 1.16010 1.33102 1.87924 1.23474 1.00395 0.81576 1.02708 1.17295 0.86979 0.85165 1.14669 1.86113 1.70220 1.38195 1.30690 1.23123 0.99836 0.99055 0.84096 0.85891 0.92005 0.91088 0.83012 0.90875 0.89662 0.93684 0.75652 0.76093 0.99499 0.99705 0.92273 0.82902 0.91122 0.91502 0.86033 0.87277 0.93543 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -6.73 10.28 -79.66 -0.82 -7.55 16 3 C 0.15 3.34 6.70 22.55 0.15 3.49 16 4 C -0.22 -4.57 8.65 22.37 0.19 -4.38 16 5 C -0.01 -0.23 4.95 -19.87 -0.10 -0.33 16 6 C 0.20 5.06 2.77 44.25 0.12 5.18 16 7 H 0.08 2.36 7.43 -2.39 -0.02 2.35 16 8 C -0.15 -3.37 9.46 71.99 0.68 -2.69 16 9 N -0.73 -20.65 5.03 -461.42 -2.32 -22.97 16 10 C 0.70 28.33 8.53 179.06 1.53 29.85 16 11 O -0.64 -32.31 16.01 -4.02 -0.06 -32.37 16 12 N -0.72 -30.74 5.55 -482.30 -2.68 -33.42 16 13 C 0.29 15.77 5.43 85.63 0.46 16.24 16 14 C -0.55 -30.00 9.28 25.60 0.24 -29.76 16 15 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 16 C 0.00 0.22 5.46 84.65 0.46 0.69 16 17 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 18 Si 0.98 42.05 29.54 68.60 2.03 44.07 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 20 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 22 C -0.22 -4.31 8.04 22.37 0.18 -4.13 16 23 C 0.15 3.29 6.70 22.55 0.15 3.44 16 24 O -0.32 -6.50 10.28 -79.56 -0.82 -7.32 16 25 C 0.01 0.15 9.81 113.37 1.11 1.26 16 26 C 0.00 0.10 5.75 22.63 0.13 0.23 16 27 O -0.34 -8.54 9.99 -70.40 -0.70 -9.24 16 28 C 0.03 0.58 11.13 113.37 1.26 1.84 16 29 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 31 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 32 H 0.15 2.61 6.27 -2.92 -0.02 2.59 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.41 8.91 6.88 -92.70 -0.64 8.27 16 37 H 0.40 14.04 8.34 -92.71 -0.77 13.26 16 38 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.15 2.31 5.14 -2.91 -0.01 2.30 16 42 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 43 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 44 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -78.65 395.78 2.20 -76.45 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.40 Total: 25.81 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 7.69 Total: 22.23 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.71 Total: -112.09 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -2.40 Total: -56.48 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -78.65 2.20 -76.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426428530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.044 kcal (2) G-P(sol) polarization free energy of solvation -78.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds