Wall clock time and date at job start Tue Mar 31 2020 21:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.55218 * 2 1 4 4 C 1.53299 * 109.50825 * 239.87445 * 2 1 3 5 5 N 1.47153 * 108.41261 * 187.79046 * 4 2 1 6 6 C 1.34781 * 120.98353 * 230.49442 * 5 4 2 7 7 O 1.21592 * 119.99376 * 355.00853 * 6 5 4 8 8 N 1.34772 * 120.00133 * 175.01116 * 6 5 4 9 9 C 1.46498 * 119.99948 * 185.07791 * 8 6 5 10 10 C 1.52999 * 109.47195 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.47215 * 300.00433 * 10 9 8 12 12 C 1.52999 * 109.46957 * 60.00122 * 10 9 8 13 13 C 1.50702 * 109.47126 * 180.02562 * 10 9 8 14 14 H 1.07991 * 119.99970 * 359.97438 * 13 10 9 15 15 C 1.37872 * 119.99770 * 180.02562 * 13 10 9 16 16 N 1.31519 * 120.00443 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99878 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47019 * 60.00238 * 17 15 13 19 19 H 1.48499 * 109.47044 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46876 * 299.99858 * 17 15 13 21 21 C 1.47151 * 118.03692 * 50.51786 * 5 4 2 22 22 C 1.53294 * 108.38439 * 309.46207 * 21 5 4 23 23 H 1.08993 * 109.51372 * 292.37891 * 22 21 5 24 24 C 1.52998 * 109.51627 * 172.22418 * 22 21 5 25 25 F 1.39903 * 109.46879 * 59.99978 * 24 22 21 26 26 F 1.39901 * 109.47691 * 180.02562 * 24 22 21 27 27 F 1.39905 * 109.47037 * 300.00393 * 24 22 21 28 28 O 1.42966 * 109.55163 * 120.11653 * 2 1 3 29 29 H 1.09007 * 109.47078 * 180.12931 * 1 2 3 30 30 H 1.09003 * 109.46640 * 300.12324 * 1 2 3 31 31 H 1.08999 * 109.47393 * 60.12484 * 1 2 3 32 32 H 1.09004 * 109.68313 * 68.04958 * 4 2 1 33 33 H 1.08993 * 109.68206 * 307.53283 * 4 2 1 34 34 H 0.96998 * 119.99897 * 5.08452 * 8 6 5 35 35 H 1.09001 * 109.47291 * 300.00693 * 9 8 6 36 36 H 1.09005 * 109.46567 * 60.00231 * 9 8 6 37 37 H 1.08998 * 109.47204 * 59.99936 * 11 10 9 38 38 H 1.08998 * 109.47013 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47022 * 299.99689 * 11 10 9 40 40 H 1.09001 * 109.47278 * 60.00266 * 12 10 9 41 41 H 1.08998 * 109.47051 * 179.97438 * 12 10 9 42 42 H 1.08998 * 109.47365 * 300.00004 * 12 10 9 43 43 H 0.96994 * 120.00162 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.67949 * 69.18389 * 21 5 4 45 45 H 1.08999 * 109.68424 * 189.70006 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0419 -0.7252 -1.2498 5 7 3.5010 -0.8770 -1.1342 6 6 4.3190 -0.5055 -2.1390 7 8 3.8509 -0.1223 -3.1937 8 7 5.6556 -0.5589 -1.9746 9 6 6.5435 -0.0514 -3.0235 10 6 7.9997 -0.2286 -2.5889 11 6 8.2437 0.5488 -1.2939 12 6 8.2847 -1.7133 -2.3538 13 6 8.9130 0.2940 -3.6677 14 1 8.4965 0.7105 -4.5729 15 6 10.2804 0.2395 -3.4994 16 7 10.7877 -0.2681 -2.3973 17 14 11.4125 0.8880 -4.8363 18 1 11.1361 2.3293 -5.0628 19 1 12.8259 0.7147 -4.4151 20 1 11.1755 0.1348 -6.0940 21 6 4.0407 -1.4467 0.1106 22 6 3.4323 -0.6859 1.2941 23 1 3.8045 0.3385 1.2986 24 6 3.8223 -1.3781 2.6016 25 9 5.2159 -1.3924 2.7239 26 9 3.2661 -0.6834 3.6812 27 9 3.3412 -2.6918 2.5953 28 8 2.0084 -0.6760 1.1654 29 1 -0.3634 -1.0277 0.0023 30 1 -0.3633 0.5158 0.8889 31 1 -0.3634 0.5119 -0.8911 32 1 1.8029 -0.1399 -2.1377 33 1 1.5752 -1.7076 -1.3212 34 1 6.0297 -0.9334 -1.1617 35 1 6.3693 -0.6049 -3.9462 36 1 6.3407 1.0065 -3.1906 37 1 7.5831 0.1711 -0.5135 38 1 9.2812 0.4229 -0.9846 39 1 8.0407 1.6065 -1.4614 40 1 8.1109 -2.2672 -3.2764 41 1 9.3222 -1.8397 -2.0446 42 1 7.6241 -2.0910 -1.5734 43 1 11.7496 -0.3068 -2.2791 44 1 3.7751 -2.5017 0.1768 45 1 5.1254 -1.3397 0.1233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:28 Heat of formation + Delta-G solvation = -219.898648 kcal Electronic energy + Delta-G solvation = -31595.286648 eV Core-core repulsion = 26812.410512 eV Total energy + Delta-G solvation = -4782.876136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.37298 -47.89483 -47.83499 -40.69781 -38.91290 -36.52408 -34.94999 -34.00485 -33.14047 -30.88781 -30.00536 -27.16014 -26.19384 -25.77093 -25.45707 -24.39134 -22.86752 -21.74536 -19.95936 -19.09103 -18.88896 -18.72073 -18.31177 -17.69795 -16.85919 -16.23390 -15.96490 -15.77597 -15.46709 -14.76228 -14.71998 -14.67218 -14.36262 -14.26833 -14.14853 -14.00070 -13.97211 -13.85961 -13.63994 -13.13113 -12.90764 -12.84900 -12.59972 -12.40785 -12.11235 -11.98310 -11.75988 -11.44127 -11.22870 -11.17779 -10.88492 -10.75109 -10.61256 -10.42488 -10.23871 -9.93730 -9.67975 -9.36258 -8.90028 -8.84173 -8.44962 -8.29810 -6.04570 -4.14948 2.06397 2.46791 2.97096 3.28703 3.32299 3.33248 3.36623 3.47980 3.59518 4.04844 4.07486 4.22737 4.37433 4.44268 4.57210 4.70753 4.72110 4.84425 5.20707 5.22211 5.24806 5.34755 5.45263 5.60898 5.76193 6.03800 6.23971 6.29415 6.42710 6.44633 6.70306 6.76894 6.80484 6.96628 6.97913 7.04281 7.31981 7.51722 7.66761 7.97165 8.06745 8.20015 8.35565 8.78248 8.86296 9.51036 10.96846 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.003203 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.967321 B = 8738.756841 C =10004.594692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 H 0.072 0.928 4 C 0.100 3.900 5 N -0.637 5.637 6 C 0.705 3.295 7 O -0.588 6.588 8 N -0.731 5.731 9 C 0.148 3.852 10 C 0.056 3.944 11 C -0.130 4.130 12 C -0.130 4.130 13 C -0.507 4.507 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.083 3.917 22 C 0.035 3.965 23 H 0.110 0.890 24 C 0.470 3.530 25 F -0.169 7.169 26 F -0.174 7.174 27 F -0.173 7.173 28 O -0.360 6.360 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.393 0.607 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.003 0.997 38 H 0.086 0.914 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.086 0.914 42 H 0.004 0.996 43 H 0.261 0.739 44 H 0.091 0.909 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.154 -2.039 10.613 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.018 3.982 3 H 0.090 0.910 4 C -0.023 4.023 5 N -0.376 5.376 6 C 0.407 3.593 7 O -0.466 6.466 8 N -0.387 5.387 9 C 0.025 3.975 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.188 4.188 13 C -0.546 4.546 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.042 4.042 22 C -0.026 4.026 23 H 0.127 0.873 24 C 0.415 3.585 25 F -0.150 7.150 26 F -0.155 7.155 27 F -0.154 7.154 28 O -0.279 6.279 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.230 0.770 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.023 0.977 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.372 -1.863 10.022 20.142 hybrid contribution 1.122 0.122 -0.143 1.137 sum -16.250 -1.741 9.879 19.097 Atomic orbital electron populations 1.21731 0.91245 1.03643 1.03304 1.22722 0.95999 0.95639 0.83867 0.91036 1.22205 0.78956 1.01929 0.99211 1.47224 1.06501 1.68387 1.15483 1.15910 0.81857 0.78567 0.82997 1.90895 1.75468 1.54618 1.25600 1.45722 1.03590 1.65792 1.23596 1.21666 0.89982 0.97488 0.88318 1.18372 0.88145 0.93308 0.94660 1.21826 1.02824 0.97868 0.96205 1.21824 1.02832 0.96801 0.97298 1.20921 0.90654 1.40422 1.02563 0.92426 1.24873 0.98022 0.94944 0.95596 1.69788 1.12118 1.45149 1.25340 0.86622 0.79540 0.79500 0.82128 1.20275 1.21330 1.20269 1.22176 1.00049 0.98506 0.83429 1.23478 0.85953 1.01609 0.91540 0.87259 1.19939 0.75005 0.77580 0.86025 1.93259 1.29036 1.96368 1.96347 1.93218 1.85192 1.78914 1.58168 1.93214 1.87893 1.37564 1.96731 1.87951 1.16718 1.78223 1.44987 0.91216 0.91167 0.90071 0.87321 0.90642 0.76991 0.92636 0.92820 0.97782 0.89510 0.95398 0.95358 0.89524 0.97742 0.92905 0.89102 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.57 37.16 0.36 -0.57 16 2 C 0.08 0.68 3.40 -26.58 -0.09 0.59 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.10 1.08 5.91 -3.53 -0.02 1.06 16 5 N -0.64 -8.34 3.02 -178.00 -0.54 -8.87 16 6 C 0.71 12.13 8.31 -86.92 -0.72 11.40 16 7 O -0.59 -12.11 15.85 5.28 0.08 -12.03 16 8 N -0.73 -12.81 4.87 -65.22 -0.32 -13.12 16 9 C 0.15 3.09 4.51 -4.04 -0.02 3.07 16 10 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 11 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 12 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 13 C -0.51 -13.04 8.01 -34.44 -0.28 -13.32 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.23 9.35 55.43 0.52 -22.71 16 17 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 C 0.08 0.91 5.66 -3.53 -0.02 0.89 16 22 C 0.04 0.35 2.76 -26.58 -0.07 0.28 16 23 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 24 C 0.47 4.87 2.85 37.16 0.11 4.97 16 25 F -0.17 -1.82 16.96 2.25 0.04 -1.78 16 26 F -0.17 -1.91 17.26 2.25 0.04 -1.87 16 27 F -0.17 -1.88 16.63 2.25 0.04 -1.85 16 28 O -0.36 -3.70 9.92 -35.23 -0.35 -4.05 16 29 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.11 1.26 7.12 -51.93 -0.37 0.89 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.39 6.25 3.67 -40.82 -0.15 6.10 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 38 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 42 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 43 H 0.26 6.64 8.31 -40.82 -0.34 6.31 16 44 H 0.09 0.92 7.62 -51.93 -0.40 0.52 16 45 H 0.10 1.12 5.56 -51.93 -0.29 0.83 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -28.78 364.82 -6.66 -35.43 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.32 Total: 3.82 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.33 Total: 6.09 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.34 Total: -44.70 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.27 Total: -16.08 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.11 Total: -5.50 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.78 -6.66 -35.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.465 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds