Wall clock time and date at job start Tue Mar 31 2020 21:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.55218 * 2 1 4 4 C 1.53299 * 109.50825 * 239.87445 * 2 1 3 5 5 N 1.47153 * 108.41261 * 187.79046 * 4 2 1 6 6 C 1.34781 * 120.98353 * 230.49442 * 5 4 2 7 7 O 1.21592 * 119.99376 * 355.00853 * 6 5 4 8 8 N 1.34772 * 120.00133 * 175.01116 * 6 5 4 9 9 C 1.46498 * 119.99948 * 185.07791 * 8 6 5 10 10 C 1.52999 * 109.47195 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.47215 * 300.00433 * 10 9 8 12 12 C 1.52999 * 109.46957 * 60.00122 * 10 9 8 13 13 C 1.50702 * 109.47126 * 180.02562 * 10 9 8 14 14 H 1.07991 * 119.99970 * 359.97438 * 13 10 9 15 15 C 1.37872 * 119.99770 * 180.02562 * 13 10 9 16 16 N 1.31519 * 120.00443 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99878 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47019 * 60.00238 * 17 15 13 19 19 H 1.48499 * 109.47044 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46876 * 299.99858 * 17 15 13 21 21 C 1.47151 * 118.03692 * 50.51786 * 5 4 2 22 22 C 1.53294 * 108.38439 * 309.46207 * 21 5 4 23 23 H 1.08993 * 109.51372 * 292.37891 * 22 21 5 24 24 C 1.52998 * 109.51627 * 172.22418 * 22 21 5 25 25 F 1.39903 * 109.46879 * 59.99978 * 24 22 21 26 26 F 1.39901 * 109.47691 * 180.02562 * 24 22 21 27 27 F 1.39905 * 109.47037 * 300.00393 * 24 22 21 28 28 O 1.42966 * 109.55163 * 120.11653 * 2 1 3 29 29 H 1.09007 * 109.47078 * 180.12931 * 1 2 3 30 30 H 1.09003 * 109.46640 * 300.12324 * 1 2 3 31 31 H 1.08999 * 109.47393 * 60.12484 * 1 2 3 32 32 H 1.09004 * 109.68313 * 68.04958 * 4 2 1 33 33 H 1.08993 * 109.68206 * 307.53283 * 4 2 1 34 34 H 0.96998 * 119.99897 * 5.08452 * 8 6 5 35 35 H 1.09001 * 109.47291 * 300.00693 * 9 8 6 36 36 H 1.09005 * 109.46567 * 60.00231 * 9 8 6 37 37 H 1.08998 * 109.47204 * 59.99936 * 11 10 9 38 38 H 1.08998 * 109.47013 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47022 * 299.99689 * 11 10 9 40 40 H 1.09001 * 109.47278 * 60.00266 * 12 10 9 41 41 H 1.08998 * 109.47051 * 179.97438 * 12 10 9 42 42 H 1.08998 * 109.47365 * 300.00004 * 12 10 9 43 43 H 0.96994 * 120.00162 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.67949 * 69.18389 * 21 5 4 45 45 H 1.08999 * 109.68424 * 189.70006 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0419 -0.7252 -1.2498 5 7 3.5010 -0.8770 -1.1342 6 6 4.3190 -0.5055 -2.1390 7 8 3.8509 -0.1223 -3.1937 8 7 5.6556 -0.5589 -1.9746 9 6 6.5435 -0.0514 -3.0235 10 6 7.9997 -0.2286 -2.5889 11 6 8.2437 0.5488 -1.2939 12 6 8.2847 -1.7133 -2.3538 13 6 8.9130 0.2940 -3.6677 14 1 8.4965 0.7105 -4.5729 15 6 10.2804 0.2395 -3.4994 16 7 10.7877 -0.2681 -2.3973 17 14 11.4125 0.8880 -4.8363 18 1 11.1361 2.3293 -5.0628 19 1 12.8259 0.7147 -4.4151 20 1 11.1755 0.1348 -6.0940 21 6 4.0407 -1.4467 0.1106 22 6 3.4323 -0.6859 1.2941 23 1 3.8045 0.3385 1.2986 24 6 3.8223 -1.3781 2.6016 25 9 5.2159 -1.3924 2.7239 26 9 3.2661 -0.6834 3.6812 27 9 3.3412 -2.6918 2.5953 28 8 2.0084 -0.6760 1.1654 29 1 -0.3634 -1.0277 0.0023 30 1 -0.3633 0.5158 0.8889 31 1 -0.3634 0.5119 -0.8911 32 1 1.8029 -0.1399 -2.1377 33 1 1.5752 -1.7076 -1.3212 34 1 6.0297 -0.9334 -1.1617 35 1 6.3693 -0.6049 -3.9462 36 1 6.3407 1.0065 -3.1906 37 1 7.5831 0.1711 -0.5135 38 1 9.2812 0.4229 -0.9846 39 1 8.0407 1.6065 -1.4614 40 1 8.1109 -2.2672 -3.2764 41 1 9.3222 -1.8397 -2.0446 42 1 7.6241 -2.0910 -1.5734 43 1 11.7496 -0.3068 -2.2791 44 1 3.7751 -2.5017 0.1768 45 1 5.1254 -1.3397 0.1233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590949132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:27 Heat of formation + Delta-G solvation = -236.419423 kcal Electronic energy + Delta-G solvation = -31596.003043 eV Core-core repulsion = 26812.410512 eV Total energy + Delta-G solvation = -4783.592530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.20744 -48.73129 -48.67468 -41.79868 -40.04200 -38.20009 -36.07815 -35.16296 -34.41313 -32.65217 -30.83180 -28.17601 -27.56775 -27.39225 -27.16708 -25.83817 -23.67381 -22.64288 -21.17735 -20.69064 -19.93353 -19.62649 -19.27595 -18.70465 -17.87002 -17.67747 -17.25616 -16.86794 -16.74428 -16.42392 -15.70883 -15.60692 -15.45322 -15.29611 -15.15526 -15.08660 -14.82741 -14.81907 -14.75939 -14.72535 -14.25350 -14.05308 -13.80967 -13.23561 -13.18307 -13.11976 -13.05391 -12.76629 -12.67546 -12.61123 -12.47464 -12.25347 -12.13232 -11.99202 -11.50747 -11.48752 -11.38056 -11.12276 -10.71380 -10.39385 -10.18089 -9.61074 -8.01127 -6.16822 1.22848 1.39111 1.45523 1.47330 1.53544 1.99851 2.16339 2.45311 2.57761 2.76008 2.91127 3.22780 3.26870 3.39865 3.61337 3.77030 3.88215 3.98325 4.14479 4.35821 4.37574 4.47291 4.52869 4.70292 4.72930 4.80327 4.95893 4.97540 5.04425 5.06799 5.17538 5.19491 5.29815 5.34999 5.56451 5.67278 5.67633 5.69040 5.74212 6.15224 6.21903 6.44022 6.84431 6.87152 7.43900 7.50981 8.97597 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015825 B = 0.003203 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.967321 B = 8738.756841 C =10004.594692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.072 0.928 4 C 0.097 3.903 5 N -0.629 5.629 6 C 0.705 3.295 7 O -0.625 6.625 8 N -0.726 5.726 9 C 0.166 3.834 10 C 0.051 3.949 11 C -0.119 4.119 12 C -0.120 4.120 13 C -0.529 4.529 14 H 0.046 0.954 15 C 0.030 3.970 16 N -0.898 5.898 17 Si 0.944 3.056 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.278 1.278 21 C 0.080 3.920 22 C 0.040 3.960 23 H 0.119 0.881 24 C 0.473 3.527 25 F -0.171 7.171 26 F -0.177 7.177 27 F -0.175 7.175 28 O -0.365 6.365 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.402 0.598 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.034 0.966 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.260 0.740 44 H 0.103 0.897 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.296 -2.240 11.627 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.021 3.979 3 H 0.090 0.910 4 C -0.026 4.026 5 N -0.367 5.367 6 C 0.407 3.593 7 O -0.506 6.506 8 N -0.383 5.383 9 C 0.042 3.958 10 C 0.050 3.950 11 C -0.177 4.177 12 C -0.177 4.177 13 C -0.567 4.567 14 H 0.064 0.936 15 C -0.170 4.170 16 N -0.537 5.537 17 Si 0.771 3.229 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.203 1.203 21 C -0.044 4.044 22 C -0.021 4.021 23 H 0.137 0.863 24 C 0.419 3.581 25 F -0.152 7.152 26 F -0.158 7.158 27 F -0.157 7.157 28 O -0.284 6.284 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.241 0.759 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.121 0.879 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.539 -2.083 11.086 21.701 hybrid contribution 1.416 0.159 -0.426 1.488 sum -17.123 -1.924 10.660 20.262 Atomic orbital electron populations 1.21752 0.89185 1.04227 1.04290 1.22806 0.97466 0.95108 0.82494 0.91031 1.22419 0.77457 1.02833 0.99883 1.47190 1.07093 1.67275 1.15143 1.15966 0.81752 0.78309 0.83290 1.90871 1.76047 1.56254 1.27461 1.45429 1.03679 1.66032 1.23173 1.21194 0.89559 0.96536 0.88524 1.18370 0.88669 0.93610 0.94307 1.21657 1.01960 0.97470 0.96583 1.21664 1.01994 0.96396 0.97694 1.21225 0.91614 1.40769 1.03138 0.93561 1.25430 0.99087 0.95288 0.97216 1.69895 1.12140 1.45478 1.26181 0.85833 0.78120 0.78860 0.80084 1.20203 1.20960 1.20318 1.22334 1.00235 0.99218 0.82617 1.23431 0.86030 1.01871 0.90797 0.86318 1.19923 0.74819 0.77392 0.86016 1.93257 1.29239 1.96366 1.96368 1.93213 1.85242 1.78982 1.58359 1.93210 1.87919 1.37815 1.96742 1.87966 1.16642 1.78416 1.45383 0.90840 0.90577 0.88693 0.88302 0.89330 0.75892 0.94366 0.94121 0.94734 0.91885 0.96100 0.96303 0.91826 0.94808 0.93035 0.87881 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.57 71.98 0.69 -0.76 16 2 C 0.08 1.24 3.40 30.69 0.10 1.35 16 3 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.10 1.90 5.91 86.35 0.51 2.41 16 5 N -0.63 -15.37 3.02 -835.33 -2.52 -17.89 16 6 C 0.71 23.54 8.31 179.05 1.49 25.03 16 7 O -0.63 -25.66 15.85 -4.01 -0.06 -25.73 16 8 N -0.73 -24.60 4.87 -478.53 -2.33 -26.93 16 9 C 0.17 6.91 4.51 86.38 0.39 7.30 16 10 C 0.05 2.31 0.50 -52.93 -0.03 2.28 16 11 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 12 C -0.12 -5.23 8.08 71.98 0.58 -4.64 16 13 C -0.53 -27.45 8.01 25.60 0.21 -27.25 16 14 H 0.05 2.44 7.74 -2.91 -0.02 2.42 16 15 C 0.03 1.54 5.15 84.65 0.44 1.98 16 16 N -0.90 -47.18 9.35 21.45 0.20 -46.98 16 17 Si 0.94 42.03 29.54 68.60 2.03 44.06 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 C 0.08 1.56 5.66 86.35 0.49 2.04 16 22 C 0.04 0.70 2.76 30.69 0.08 0.79 16 23 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 24 C 0.47 8.81 2.85 71.98 0.21 9.01 16 25 F -0.17 -3.33 16.96 44.97 0.76 -2.57 16 26 F -0.18 -3.54 17.26 44.97 0.78 -2.76 16 27 F -0.18 -3.46 16.63 44.97 0.75 -2.71 16 28 O -0.36 -6.60 9.92 -148.98 -1.48 -8.08 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.10 2.19 7.12 -2.38 -0.02 2.18 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.40 11.95 3.67 -92.71 -0.34 11.61 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 38 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 42 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 43 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 44 H 0.10 1.81 7.62 -2.39 -0.02 1.79 16 45 H 0.11 2.01 5.56 -2.39 -0.01 1.99 16 Total: -1.00 -61.09 364.82 4.54 -56.56 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.68 Total: 18.03 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 5.74 Total: 15.01 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -4.65 Total: -91.80 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.54 Total: -33.81 kcal Atomic # 9 Polarization: -10.33 SS G_CDS: 2.29 Total: -8.04 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -61.09 4.54 -56.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.862 kcal (2) G-P(sol) polarization free energy of solvation -61.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds