Wall clock time and date at job start Tue Mar 31 2020 21:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.55818 * 2 1 4 4 C 1.53295 * 109.50893 * 120.12088 * 2 1 3 5 5 N 1.47153 * 108.38529 * 67.62366 * 4 2 1 6 6 C 1.34776 * 120.98423 * 230.51235 * 5 4 2 7 7 O 1.21583 * 119.99689 * 355.00477 * 6 5 4 8 8 N 1.34773 * 120.00068 * 175.00786 * 6 5 4 9 9 C 1.46503 * 120.00146 * 185.08056 * 8 6 5 10 10 C 1.53000 * 109.47220 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46856 * 300.00043 * 10 9 8 12 12 C 1.52998 * 109.47309 * 60.00104 * 10 9 8 13 13 C 1.50701 * 109.46882 * 180.02562 * 10 9 8 14 14 H 1.07998 * 120.00301 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00010 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99648 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00069 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47178 * 60.00085 * 17 15 13 19 19 H 1.48503 * 109.46666 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47216 * 299.99748 * 17 15 13 21 21 C 1.47156 * 118.03460 * 50.53432 * 5 4 2 22 22 C 1.53297 * 108.38246 * 309.46254 * 21 5 4 23 23 H 1.08996 * 109.51826 * 292.38290 * 22 21 5 24 24 C 1.52999 * 109.51098 * 172.22801 * 22 21 5 25 25 F 1.39907 * 109.47295 * 300.25350 * 24 22 21 26 26 F 1.39895 * 109.47300 * 60.25844 * 24 22 21 27 27 F 1.39904 * 109.47066 * 180.25720 * 24 22 21 28 28 O 1.42961 * 109.51349 * 239.86780 * 2 1 3 29 29 H 1.09001 * 109.47230 * 299.88280 * 1 2 3 30 30 H 1.09001 * 109.47178 * 59.87472 * 1 2 3 31 31 H 1.08996 * 109.47731 * 179.87414 * 1 2 3 32 32 H 1.09005 * 109.68259 * 187.34413 * 4 2 1 33 33 H 1.08996 * 109.68472 * 307.90070 * 4 2 1 34 34 H 0.97004 * 119.99939 * 5.07990 * 8 6 5 35 35 H 1.08998 * 109.46659 * 300.00448 * 9 8 6 36 36 H 1.09003 * 109.46829 * 60.00004 * 9 8 6 37 37 H 1.08992 * 109.47590 * 60.00022 * 11 10 9 38 38 H 1.09004 * 109.46848 * 180.02562 * 11 10 9 39 39 H 1.09003 * 109.47344 * 300.00121 * 11 10 9 40 40 H 1.08998 * 109.47006 * 59.99318 * 12 10 9 41 41 H 1.08993 * 109.47037 * 180.02562 * 12 10 9 42 42 H 1.09002 * 109.46979 * 300.00233 * 12 10 9 43 43 H 0.97000 * 119.99569 * 180.02562 * 16 15 13 44 44 H 1.08997 * 109.68038 * 189.74622 * 21 5 4 45 45 H 1.08994 * 109.71385 * 69.20427 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7251 1.2498 5 7 1.6958 -2.1507 1.1338 6 6 1.0714 -2.7970 2.1382 7 8 0.8669 -2.2280 3.1930 8 7 0.6737 -4.0741 1.9733 9 6 -0.1025 -4.7409 3.0218 10 6 -0.4224 -6.1725 2.5873 11 6 -1.2357 -6.1425 1.2917 12 6 0.8815 -6.9380 2.3533 13 6 -1.2214 -6.8581 3.6656 14 1 -1.4752 -6.3260 4.5705 15 6 -1.6274 -8.1649 3.4974 16 7 -1.3180 -8.8129 2.3956 17 14 -2.6171 -9.0149 4.8343 18 1 -3.8830 -8.2723 5.0610 19 1 -2.9277 -10.4044 4.4124 20 1 -1.8280 -9.0436 6.0919 21 6 2.0521 -2.8498 -0.1111 22 6 1.5395 -2.0211 -1.2946 23 1 0.4496 -2.0284 -1.2994 24 6 2.0613 -2.6204 -2.6021 25 9 3.4604 -2.6128 -2.5930 26 9 1.6029 -3.9361 -2.7277 27 9 1.5979 -1.8601 -3.6812 28 8 2.0075 -0.6764 -1.1654 29 1 -0.3634 0.5120 0.8910 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3634 -1.0276 -0.0023 32 1 3.1240 -0.6147 1.3210 33 1 1.5703 -0.3040 2.1377 34 1 0.9013 -4.5519 1.1604 35 1 0.4771 -4.7625 3.9446 36 1 -1.0313 -4.1953 3.1888 37 1 -0.6584 -5.6465 0.5116 38 1 -1.4641 -7.1625 0.9824 39 1 -2.1647 -5.5972 1.4584 40 1 1.4609 -6.9592 3.2762 41 1 0.6535 -7.9577 2.0433 42 1 1.4590 -6.4419 1.5732 43 1 -1.6040 -9.7322 2.2771 44 1 1.5871 -3.8355 -0.1245 45 1 3.1350 -2.9537 -0.1774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:35 Heat of formation + Delta-G solvation = -216.759648 kcal Electronic energy + Delta-G solvation = -31910.503063 eV Core-core repulsion = 27127.763044 eV Total energy + Delta-G solvation = -4782.740019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.36565 -47.88684 -47.82767 -40.84815 -38.96868 -36.52271 -34.91478 -33.77702 -32.95787 -30.89059 -30.08383 -27.20246 -26.22166 -25.77215 -25.50233 -24.56151 -23.28708 -21.24894 -19.74621 -19.11955 -18.82015 -18.70475 -18.44575 -17.62758 -16.83107 -16.19649 -15.85024 -15.70511 -15.17751 -15.05872 -14.72962 -14.68441 -14.59980 -14.26106 -14.15388 -14.07892 -13.96529 -13.94481 -13.70160 -13.13847 -12.94436 -12.76613 -12.49638 -12.36160 -12.10921 -11.92383 -11.74336 -11.43783 -11.22866 -11.02174 -10.88622 -10.75144 -10.62349 -10.42522 -10.23816 -9.92843 -9.68037 -9.36234 -8.87912 -8.84196 -8.44702 -8.29138 -6.04641 -4.14933 2.09406 2.48409 3.01633 3.28605 3.33191 3.33414 3.36590 3.51078 3.60348 4.04143 4.10653 4.25000 4.37597 4.45166 4.51927 4.67208 4.74187 4.85363 5.19525 5.22219 5.31784 5.36014 5.53493 5.56326 5.84764 6.05333 6.25479 6.29408 6.40642 6.44476 6.70476 6.76781 6.80716 6.96874 6.97877 7.04805 7.31969 7.51664 7.66707 7.97051 8.06866 8.20621 8.35561 8.79044 8.86437 9.51033 10.96787 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003312 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.749892 B = 8452.380917 C = 9528.384863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.077 3.923 3 H 0.126 0.874 4 C 0.100 3.900 5 N -0.634 5.634 6 C 0.706 3.294 7 O -0.588 6.588 8 N -0.732 5.732 9 C 0.148 3.852 10 C 0.056 3.944 11 C -0.130 4.130 12 C -0.130 4.130 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.084 3.916 22 C 0.029 3.971 23 H 0.113 0.887 24 C 0.469 3.531 25 F -0.173 7.173 26 F -0.169 7.169 27 F -0.174 7.174 28 O -0.356 6.356 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.393 0.607 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.003 0.997 38 H 0.086 0.914 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.086 0.914 42 H 0.004 0.996 43 H 0.261 0.739 44 H 0.102 0.898 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.025 14.977 -10.592 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.019 3.981 3 H 0.143 0.857 4 C -0.024 4.024 5 N -0.373 5.373 6 C 0.407 3.593 7 O -0.466 6.466 8 N -0.388 5.388 9 C 0.026 3.974 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.188 4.188 13 C -0.545 4.545 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.041 4.041 22 C -0.032 4.032 23 H 0.130 0.870 24 C 0.414 3.586 25 F -0.154 7.154 26 F -0.151 7.151 27 F -0.155 7.155 28 O -0.275 6.275 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.230 0.770 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.105 0.895 42 H 0.023 0.977 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.931 15.241 -10.006 19.505 hybrid contribution -0.491 -0.960 0.173 1.092 sum 6.440 14.281 -9.833 18.496 Atomic orbital electron populations 1.22403 0.95122 1.03361 1.03455 1.22834 0.94756 0.96562 0.83926 0.85681 1.22179 1.00995 0.79940 0.99253 1.47163 1.63986 1.10759 1.15426 1.15895 0.78200 0.82195 0.82999 1.90893 1.62422 1.67666 1.25586 1.45724 1.58234 1.11203 1.23594 1.21658 0.93077 0.94354 0.88335 1.18369 0.93477 0.87981 0.94646 1.21827 0.97747 1.02942 0.96217 1.21824 0.96117 1.03514 0.97299 1.20918 1.33795 0.97229 1.02587 0.92446 1.24871 0.95800 0.97167 0.95589 1.69790 1.46021 1.11218 1.25362 0.86625 0.80585 0.78459 0.82138 1.20289 1.21325 1.20267 1.22163 1.02355 0.96142 0.83444 1.23511 1.01646 0.86505 0.91500 0.86958 1.19961 0.76098 0.76469 0.86077 1.93213 1.29260 1.96235 1.96728 1.93255 1.88745 1.36724 1.96327 1.93217 1.88441 1.75643 1.58212 1.88015 1.72090 1.22240 1.45120 0.90465 0.91358 0.91836 0.90639 0.87274 0.77010 0.92665 0.92842 0.97786 0.89518 0.95400 0.95356 0.89537 0.97743 0.92911 0.87982 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 8.81 37.15 0.33 -1.30 16 2 C 0.08 0.65 3.93 -26.58 -0.10 0.55 16 3 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.10 1.03 6.00 -3.53 -0.02 1.01 16 5 N -0.63 -8.06 2.54 -178.00 -0.45 -8.52 16 6 C 0.71 11.91 8.31 -86.92 -0.72 11.19 16 7 O -0.59 -11.93 15.85 5.29 0.08 -11.85 16 8 N -0.73 -12.67 4.87 -65.22 -0.32 -12.99 16 9 C 0.15 3.07 4.51 -4.04 -0.02 3.06 16 10 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 11 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 12 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 13 C -0.51 -12.99 8.01 -34.44 -0.28 -13.27 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.18 9.35 55.43 0.52 -22.66 16 17 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 C 0.08 0.90 5.66 -3.53 -0.02 0.88 16 22 C 0.03 0.29 2.37 -26.58 -0.06 0.23 16 23 H 0.11 1.06 6.25 -51.93 -0.32 0.74 16 24 C 0.47 4.87 2.85 37.16 0.11 4.97 16 25 F -0.17 -1.89 16.62 2.25 0.04 -1.85 16 26 F -0.17 -1.83 16.97 2.25 0.04 -1.79 16 27 F -0.17 -1.91 17.26 2.25 0.04 -1.87 16 28 O -0.36 -3.57 10.12 -35.23 -0.36 -3.92 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.66 6.11 -51.93 -0.32 0.35 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.23 7.11 -51.93 -0.37 0.86 16 34 H 0.39 6.20 3.67 -40.82 -0.15 6.05 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.00 0.06 6.86 -51.93 -0.36 -0.30 16 38 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 42 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 43 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 44 H 0.10 1.10 5.57 -51.93 -0.29 0.81 16 45 H 0.09 0.91 7.61 -51.93 -0.40 0.51 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -28.57 360.07 -6.48 -35.04 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.11 Total: 4.52 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.36 Total: 5.05 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.25 Total: -44.17 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.27 Total: -15.77 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.11 Total: -5.51 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.57 -6.48 -35.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.716 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds