Wall clock time and date at job start Tue Mar 31 2020 21:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.55818 * 2 1 4 4 C 1.53295 * 109.50893 * 120.12088 * 2 1 3 5 5 N 1.47153 * 108.38529 * 67.62366 * 4 2 1 6 6 C 1.34776 * 120.98423 * 230.51235 * 5 4 2 7 7 O 1.21583 * 119.99689 * 355.00477 * 6 5 4 8 8 N 1.34773 * 120.00068 * 175.00786 * 6 5 4 9 9 C 1.46503 * 120.00146 * 185.08056 * 8 6 5 10 10 C 1.53000 * 109.47220 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46856 * 300.00043 * 10 9 8 12 12 C 1.52998 * 109.47309 * 60.00104 * 10 9 8 13 13 C 1.50701 * 109.46882 * 180.02562 * 10 9 8 14 14 H 1.07998 * 120.00301 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00010 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99648 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00069 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.47178 * 60.00085 * 17 15 13 19 19 H 1.48503 * 109.46666 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47216 * 299.99748 * 17 15 13 21 21 C 1.47156 * 118.03460 * 50.53432 * 5 4 2 22 22 C 1.53297 * 108.38246 * 309.46254 * 21 5 4 23 23 H 1.08996 * 109.51826 * 292.38290 * 22 21 5 24 24 C 1.52999 * 109.51098 * 172.22801 * 22 21 5 25 25 F 1.39907 * 109.47295 * 300.25350 * 24 22 21 26 26 F 1.39895 * 109.47300 * 60.25844 * 24 22 21 27 27 F 1.39904 * 109.47066 * 180.25720 * 24 22 21 28 28 O 1.42961 * 109.51349 * 239.86780 * 2 1 3 29 29 H 1.09001 * 109.47230 * 299.88280 * 1 2 3 30 30 H 1.09001 * 109.47178 * 59.87472 * 1 2 3 31 31 H 1.08996 * 109.47731 * 179.87414 * 1 2 3 32 32 H 1.09005 * 109.68259 * 187.34413 * 4 2 1 33 33 H 1.08996 * 109.68472 * 307.90070 * 4 2 1 34 34 H 0.97004 * 119.99939 * 5.07990 * 8 6 5 35 35 H 1.08998 * 109.46659 * 300.00448 * 9 8 6 36 36 H 1.09003 * 109.46829 * 60.00004 * 9 8 6 37 37 H 1.08992 * 109.47590 * 60.00022 * 11 10 9 38 38 H 1.09004 * 109.46848 * 180.02562 * 11 10 9 39 39 H 1.09003 * 109.47344 * 300.00121 * 11 10 9 40 40 H 1.08998 * 109.47006 * 59.99318 * 12 10 9 41 41 H 1.08993 * 109.47037 * 180.02562 * 12 10 9 42 42 H 1.09002 * 109.46979 * 300.00233 * 12 10 9 43 43 H 0.97000 * 119.99569 * 180.02562 * 16 15 13 44 44 H 1.08997 * 109.68038 * 189.74622 * 21 5 4 45 45 H 1.08994 * 109.71385 * 69.20427 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7251 1.2498 5 7 1.6958 -2.1507 1.1338 6 6 1.0714 -2.7970 2.1382 7 8 0.8669 -2.2280 3.1930 8 7 0.6737 -4.0741 1.9733 9 6 -0.1025 -4.7409 3.0218 10 6 -0.4224 -6.1725 2.5873 11 6 -1.2357 -6.1425 1.2917 12 6 0.8815 -6.9380 2.3533 13 6 -1.2214 -6.8581 3.6656 14 1 -1.4752 -6.3260 4.5705 15 6 -1.6274 -8.1649 3.4974 16 7 -1.3180 -8.8129 2.3956 17 14 -2.6171 -9.0149 4.8343 18 1 -3.8830 -8.2723 5.0610 19 1 -2.9277 -10.4044 4.4124 20 1 -1.8280 -9.0436 6.0919 21 6 2.0521 -2.8498 -0.1111 22 6 1.5395 -2.0211 -1.2946 23 1 0.4496 -2.0284 -1.2994 24 6 2.0613 -2.6204 -2.6021 25 9 3.4604 -2.6128 -2.5930 26 9 1.6029 -3.9361 -2.7277 27 9 1.5979 -1.8601 -3.6812 28 8 2.0075 -0.6764 -1.1654 29 1 -0.3634 0.5120 0.8910 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3634 -1.0276 -0.0023 32 1 3.1240 -0.6147 1.3210 33 1 1.5703 -0.3040 2.1377 34 1 0.9013 -4.5519 1.1604 35 1 0.4771 -4.7625 3.9446 36 1 -1.0313 -4.1953 3.1888 37 1 -0.6584 -5.6465 0.5116 38 1 -1.4641 -7.1625 0.9824 39 1 -2.1647 -5.5972 1.4584 40 1 1.4609 -6.9592 3.2762 41 1 0.6535 -7.9577 2.0433 42 1 1.4590 -6.4419 1.5732 43 1 -1.6040 -9.7322 2.2771 44 1 1.5871 -3.8355 -0.1245 45 1 3.1350 -2.9537 -0.1774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590949134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:34 Heat of formation + Delta-G solvation = -232.980164 kcal Electronic energy + Delta-G solvation = -31911.206437 eV Core-core repulsion = 27127.763044 eV Total energy + Delta-G solvation = -4783.443393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.19802 -48.72251 -48.66410 -41.89187 -40.11619 -38.19082 -36.02538 -35.11763 -34.07672 -32.62510 -30.94041 -28.21599 -27.56756 -27.38658 -27.18323 -26.04550 -24.12571 -22.31024 -20.78812 -20.68375 -19.95643 -19.58910 -19.33883 -18.66966 -17.84149 -17.69324 -17.09307 -16.89103 -16.65681 -16.09427 -15.85408 -15.60084 -15.50847 -15.30137 -15.21340 -15.12273 -15.08590 -14.81135 -14.80308 -14.69126 -14.39244 -14.04891 -13.83534 -13.25492 -13.21371 -13.10694 -13.05446 -12.70611 -12.67218 -12.60846 -12.49376 -12.25148 -12.12793 -11.84042 -11.49129 -11.47037 -11.37212 -11.11152 -10.71176 -10.39052 -10.15389 -9.56836 -8.00958 -6.16536 1.26468 1.41962 1.45524 1.47511 1.53654 2.03239 2.21904 2.45645 2.60210 2.77609 2.93203 3.23035 3.29921 3.42148 3.62599 3.75408 3.89041 3.95067 4.16885 4.36276 4.37821 4.49536 4.53272 4.65662 4.70604 4.78265 4.85892 4.98028 5.04510 5.07594 5.15110 5.19605 5.29400 5.35845 5.57444 5.66018 5.67401 5.68546 5.76665 6.15256 6.22118 6.44205 6.86800 6.87565 7.46918 7.51251 8.97791 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.003312 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.749892 B = 8452.380917 C = 9528.384863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.158 0.842 4 C 0.094 3.906 5 N -0.625 5.625 6 C 0.706 3.294 7 O -0.625 6.625 8 N -0.727 5.727 9 C 0.167 3.833 10 C 0.051 3.949 11 C -0.119 4.119 12 C -0.120 4.120 13 C -0.528 4.528 14 H 0.046 0.954 15 C 0.030 3.970 16 N -0.899 5.899 17 Si 0.944 3.056 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.278 1.278 21 C 0.080 3.920 22 C 0.035 3.965 23 H 0.119 0.881 24 C 0.472 3.528 25 F -0.175 7.175 26 F -0.172 7.172 27 F -0.177 7.177 28 O -0.360 6.360 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.402 0.598 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.260 0.740 44 H 0.103 0.897 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 16.108 -11.673 21.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.026 3.974 3 H 0.175 0.825 4 C -0.028 4.028 5 N -0.363 5.363 6 C 0.408 3.592 7 O -0.506 6.506 8 N -0.384 5.384 9 C 0.043 3.957 10 C 0.051 3.949 11 C -0.177 4.177 12 C -0.177 4.177 13 C -0.567 4.567 14 H 0.064 0.936 15 C -0.170 4.170 16 N -0.537 5.537 17 Si 0.771 3.229 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.203 1.203 21 C -0.044 4.044 22 C -0.026 4.026 23 H 0.136 0.864 24 C 0.417 3.583 25 F -0.157 7.157 26 F -0.153 7.153 27 F -0.158 7.158 28 O -0.278 6.278 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.240 0.760 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.121 0.879 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.620 16.390 -11.136 21.230 hybrid contribution -0.659 -1.255 0.479 1.496 sum 6.961 15.136 -10.657 19.776 Atomic orbital electron populations 1.22396 0.95339 1.02294 1.04165 1.22971 0.94539 0.97512 0.82397 0.82523 1.22423 1.01952 0.78444 0.99983 1.47114 1.62580 1.11652 1.14987 1.15943 0.78190 0.81789 0.83308 1.90869 1.63931 1.68357 1.27448 1.45432 1.58207 1.11654 1.23141 1.21176 0.92618 0.93415 0.88540 1.18366 0.93499 0.88795 0.94282 1.21656 0.97798 1.01622 0.96600 1.21662 0.96048 1.02345 0.97688 1.21217 1.34516 0.97777 1.03144 0.93594 1.25427 0.96666 0.97711 0.97200 1.69899 1.46403 1.11196 1.26206 0.85839 0.79361 0.77625 0.80100 1.20229 1.20955 1.20318 1.22313 1.03214 0.96137 0.82697 1.23431 1.01927 0.86502 0.90736 0.86362 1.19962 0.75916 0.76288 0.86104 1.93210 1.29502 1.96234 1.96739 1.93252 1.88762 1.36970 1.96352 1.93212 1.88473 1.75715 1.58403 1.88029 1.72207 1.22038 1.45568 0.90328 0.90120 0.93745 0.89098 0.88303 0.75959 0.94426 0.94172 0.94773 0.91901 0.96095 0.96297 0.91850 0.94827 0.93050 0.87941 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 8.81 71.98 0.63 -2.20 16 2 C 0.08 1.17 3.93 30.69 0.12 1.29 16 3 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.09 1.76 6.00 86.35 0.52 2.27 16 5 N -0.63 -14.82 2.54 -835.35 -2.12 -16.94 16 6 C 0.71 23.21 8.31 179.06 1.49 24.70 16 7 O -0.63 -25.32 15.85 -3.98 -0.06 -25.38 16 8 N -0.73 -24.50 4.87 -478.54 -2.33 -26.83 16 9 C 0.17 6.92 4.51 86.38 0.39 7.31 16 10 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 11 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 12 C -0.12 -5.23 8.08 71.98 0.58 -4.64 16 13 C -0.53 -27.37 8.01 25.60 0.21 -27.17 16 14 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 15 C 0.03 1.55 5.15 84.65 0.44 1.98 16 16 N -0.90 -47.19 9.35 21.45 0.20 -46.99 16 17 Si 0.94 42.02 29.54 68.60 2.03 44.04 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 C 0.08 1.55 5.66 86.35 0.49 2.03 16 22 C 0.03 0.61 2.37 30.69 0.07 0.69 16 23 H 0.12 1.98 6.25 -2.39 -0.01 1.96 16 24 C 0.47 8.79 2.85 71.98 0.21 8.99 16 25 F -0.18 -3.44 16.62 44.97 0.75 -2.69 16 26 F -0.17 -3.38 16.97 44.97 0.76 -2.62 16 27 F -0.18 -3.52 17.26 44.97 0.78 -2.75 16 28 O -0.36 -6.16 10.12 -148.98 -1.51 -7.67 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 0.85 6.11 -2.39 -0.01 0.84 16 32 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.10 2.10 7.11 -2.39 -0.02 2.08 16 34 H 0.40 11.92 3.67 -92.71 -0.34 11.58 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 38 H 0.06 3.04 6.07 -2.38 -0.01 3.03 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 42 H 0.03 1.22 6.86 -2.39 -0.02 1.21 16 43 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 44 H 0.10 1.97 5.57 -2.39 -0.01 1.95 16 45 H 0.10 1.78 7.61 -2.39 -0.02 1.76 16 Total: -1.00 -60.98 360.07 4.88 -56.10 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.69 Total: 18.72 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.69 Total: 13.01 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -4.25 Total: -90.76 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.57 Total: -33.05 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 2.29 Total: -8.06 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -60.98 4.88 -56.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.876 kcal (2) G-P(sol) polarization free energy of solvation -60.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds