Wall clock time and date at job start Tue Mar 31 2020 20:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49598 * 2 1 4 4 C 1.53194 * 109.50400 * 120.06623 * 2 1 3 5 5 N 1.46926 * 108.77725 * 174.58494 * 4 2 1 6 6 C 1.34771 * 120.62944 * 126.36939 * 5 4 2 7 7 O 1.21356 * 120.00402 * 351.30132 * 6 5 4 8 8 C 1.49448 * 120.00092 * 171.29864 * 6 5 4 9 9 O 1.21345 * 120.00234 * 353.55647 * 8 6 5 10 10 N 1.34775 * 120.00065 * 173.55905 * 8 6 5 11 11 C 1.46504 * 119.99933 * 184.41428 * 10 8 6 12 12 C 1.53010 * 109.47067 * 175.11521 * 11 10 8 13 13 C 1.50691 * 115.54879 * 65.09707 * 12 11 10 14 14 H 1.08000 * 120.00234 * 271.43796 * 13 12 11 15 15 C 1.37879 * 120.00033 * 91.44389 * 13 12 11 16 16 N 1.31515 * 119.99872 * 3.94197 * 15 13 12 17 17 Si 1.86799 * 120.00334 * 183.95010 * 15 13 12 18 18 H 1.48496 * 109.47127 * 89.99571 * 17 15 13 19 19 H 1.48499 * 109.47139 * 210.00023 * 17 15 13 20 20 H 1.48503 * 109.46807 * 329.99302 * 17 15 13 21 21 C 1.52997 * 117.49442 * 279.42717 * 12 11 10 22 22 C 1.53000 * 117.49447 * 210.77329 * 12 11 10 23 23 C 1.46921 * 118.73994 * 306.39420 * 5 4 2 24 24 C 1.53189 * 108.77979 * 53.60573 * 23 5 4 25 25 C 1.53042 * 109.49633 * 239.90504 * 2 1 3 26 26 H 1.08996 * 109.46113 * 298.70233 * 25 2 1 27 27 C 1.50703 * 109.46190 * 58.66060 * 25 2 1 28 28 O 1.20829 * 119.99569 * 0.02562 * 27 25 2 29 29 O 1.34228 * 120.00101 * 180.02562 * 27 25 2 30 30 H 1.09004 * 109.46466 * 299.93108 * 1 2 3 31 31 H 1.08994 * 109.47771 * 59.93299 * 1 2 3 32 32 H 1.09004 * 109.47141 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58304 * 294.37695 * 4 2 1 34 34 H 1.08998 * 109.58272 * 54.79540 * 4 2 1 35 35 H 0.97004 * 120.00317 * 4.40589 * 10 8 6 36 36 H 1.08997 * 109.47012 * 295.11069 * 11 10 8 37 37 H 1.08999 * 109.47232 * 55.11542 * 11 10 8 38 38 H 0.96996 * 120.00327 * 185.00353 * 16 15 13 39 39 H 1.08998 * 117.50306 * 0.02562 * 21 12 11 40 40 H 1.09005 * 117.49592 * 145.02319 * 21 12 11 41 41 H 1.09000 * 117.49124 * 214.97999 * 22 12 11 42 42 H 1.09000 * 117.50044 * 359.97438 * 22 12 11 43 43 H 1.09000 * 109.59090 * 173.39744 * 23 5 4 44 44 H 1.09007 * 109.58615 * 293.67955 * 23 5 4 45 45 H 1.09003 * 109.49603 * 65.31482 * 24 23 5 46 46 H 1.08998 * 109.50259 * 185.38504 * 24 23 5 47 47 H 0.96704 * 116.99306 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2497 5 7 3.5047 -0.8288 1.1696 6 6 4.2813 -0.3850 2.1778 7 8 3.7896 0.2474 3.0894 8 6 5.7480 -0.6716 2.1731 9 8 6.2211 -1.4008 1.3264 10 7 6.5454 -0.1201 3.1093 11 6 7.9951 -0.3223 3.0481 12 6 8.6718 0.5020 4.1453 13 6 8.3478 0.0926 5.5589 14 1 7.4922 0.5185 6.0619 15 6 9.1438 -0.8257 6.2103 16 7 10.2291 -1.2859 5.6273 17 14 8.6806 -1.4162 7.9209 18 1 7.8133 -2.6167 7.8122 19 1 9.9120 -1.7618 8.6756 20 1 7.9484 -0.3394 8.6349 21 6 8.8942 1.9913 3.8744 22 6 10.0821 1.0260 3.8670 23 6 4.1053 -1.4266 -0.0306 24 6 3.5708 -0.6953 -1.2660 25 6 2.0407 -0.7234 -1.2482 26 1 1.6967 -1.7575 -1.2349 27 6 1.5117 -0.0344 -2.4796 28 8 0.7997 0.9357 -2.3702 29 8 1.8313 -0.4984 -3.6979 30 1 -0.3632 0.5128 0.8907 31 1 -0.3634 0.5148 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1574 2.1389 34 1 1.6054 -1.7212 1.2984 35 1 6.1595 0.4108 3.8235 36 1 8.2212 -1.3783 3.1954 37 1 8.3656 -0.0038 2.0737 38 1 10.7495 -1.9847 6.0535 39 1 8.5581 2.3840 2.9148 40 1 8.8066 2.6750 4.7189 41 1 10.7755 1.0749 4.7066 42 1 10.5280 0.7832 2.9025 43 1 5.1896 -1.3245 0.0138 44 1 3.8397 -2.4824 -0.0850 45 1 3.9158 0.3386 -1.2543 46 1 3.9338 -1.1899 -2.1670 47 1 1.4677 -0.0235 -4.4578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599940791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:10 Heat of formation + Delta-G solvation = -127.459452 kcal Electronic energy + Delta-G solvation = -29973.277100 eV Core-core repulsion = 25736.266169 eV Total energy + Delta-G solvation = -4237.010931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.26510 -40.43487 -38.64986 -37.62162 -36.83139 -36.48670 -34.20309 -33.21728 -32.39221 -31.96669 -27.73831 -27.47123 -26.48587 -25.36971 -23.37201 -22.66634 -22.11328 -21.15845 -20.33648 -19.81165 -19.16081 -18.39416 -17.50092 -17.19269 -16.78785 -16.18730 -15.96859 -15.82365 -15.30023 -14.95724 -14.74706 -14.48710 -14.31788 -14.18548 -13.96964 -13.62945 -13.40347 -13.08163 -12.88834 -12.77209 -12.48532 -12.24082 -12.09563 -11.96681 -11.72038 -11.58962 -11.40927 -11.28465 -11.06265 -10.99533 -10.93174 -10.76049 -10.54694 -10.50851 -10.24690 -9.58973 -9.16387 -9.01863 -8.85798 -8.55757 -8.40710 -8.20891 -6.11933 -4.21549 1.66506 1.83212 2.48962 2.66063 3.25869 3.33319 3.36134 3.45332 3.74117 4.12656 4.33641 4.34216 4.54504 4.63127 4.75779 4.96325 4.98703 5.07931 5.14862 5.20445 5.30224 5.32627 5.35964 5.44374 5.55469 5.73548 5.77949 5.88061 5.91142 5.91732 5.98393 6.23955 6.26219 6.30947 6.34016 6.45161 6.63214 6.72937 6.98851 7.06571 7.08780 7.29531 7.52236 7.54062 7.69804 7.77909 8.05435 8.28479 8.42294 8.81131 9.46491 10.95187 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.002493 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.950664 B =11228.653690 C =11768.451871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.088 4.088 3 H 0.085 0.915 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.511 3.489 7 O -0.518 6.518 8 C 0.497 3.503 9 O -0.531 6.531 10 N -0.662 5.662 11 C 0.158 3.842 12 C 0.016 3.984 13 C -0.500 4.500 14 H 0.061 0.939 15 C 0.074 3.926 16 N -0.875 5.875 17 Si 0.890 3.110 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.212 4.212 22 C -0.133 4.133 23 C 0.071 3.929 24 C -0.126 4.126 25 C -0.078 4.078 26 H 0.112 0.888 27 C 0.484 3.516 28 O -0.509 6.509 29 O -0.515 6.515 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.262 0.738 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.152 0.848 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.710 -0.434 -16.063 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.108 4.108 3 H 0.104 0.896 4 C -0.009 4.009 5 N -0.325 5.325 6 C 0.294 3.706 7 O -0.393 6.393 8 C 0.277 3.723 9 O -0.412 6.412 10 N -0.311 5.311 11 C 0.036 3.964 12 C 0.016 3.984 13 C -0.538 4.538 14 H 0.080 0.920 15 C -0.130 4.130 16 N -0.512 5.512 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.249 4.249 22 C -0.171 4.171 23 C -0.050 4.050 24 C -0.165 4.165 25 C -0.097 4.097 26 H 0.130 0.870 27 C 0.327 3.673 28 O -0.397 6.397 29 O -0.327 6.327 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.169 0.831 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -15.421 -0.606 -15.691 22.009 hybrid contribution -0.740 0.032 0.620 0.966 sum -16.161 -0.575 -15.071 22.105 Atomic orbital electron populations 1.22071 0.93501 1.02112 1.04150 1.21393 0.96950 1.00353 0.92082 0.89644 1.21785 0.79060 1.01150 0.98861 1.47934 1.06298 1.59991 1.18318 1.20432 0.88225 0.79496 0.82451 1.90752 1.75102 1.37722 1.35712 1.19936 0.86938 0.82083 0.83313 1.90418 1.75579 1.37559 1.37656 1.45956 1.08706 1.49418 1.27018 1.21275 0.76074 1.01586 0.97471 1.19040 0.96042 0.89306 0.94045 1.20388 1.11940 1.25689 0.95765 0.92045 1.24979 0.94022 0.96326 0.97687 1.70002 1.14525 1.27224 1.39412 0.86625 0.77956 0.79311 0.84390 1.20546 1.21214 1.19741 1.23072 1.06716 0.95055 1.00060 1.22452 0.91856 1.02349 1.00413 1.22912 1.04387 0.96380 0.81366 1.22008 0.91541 1.02838 1.00089 1.21207 0.97975 1.01213 0.89286 0.87036 1.23537 0.77029 0.82052 0.84728 1.90663 1.35425 1.26658 1.87000 1.84551 1.71516 1.59728 1.16908 0.92001 0.89757 0.92853 0.88055 0.90771 0.74843 0.90803 0.93315 0.92851 0.91758 0.90221 0.88967 0.91824 0.83136 0.90985 0.90900 0.88971 0.73232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.86 37.16 0.33 -1.00 16 2 C -0.09 -0.81 2.06 -90.50 -0.19 -1.00 16 3 H 0.09 0.94 8.13 -51.93 -0.42 0.52 16 4 C 0.11 1.16 5.73 -3.71 -0.02 1.14 16 5 N -0.59 -7.37 2.97 -173.28 -0.51 -7.89 16 6 C 0.51 8.12 7.73 -11.59 -0.09 8.03 16 7 O -0.52 -9.27 15.93 5.49 0.09 -9.18 16 8 C 0.50 8.74 7.74 -11.59 -0.09 8.65 16 9 O -0.53 -9.64 13.18 5.50 0.07 -9.57 16 10 N -0.66 -12.63 5.47 -60.73 -0.33 -12.96 16 11 C 0.16 3.34 5.51 -4.03 -0.02 3.32 16 12 C 0.02 0.38 1.59 -155.66 -0.25 0.13 16 13 C -0.50 -12.78 8.63 -34.44 -0.30 -13.08 16 14 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 15 C 0.07 1.93 5.41 -17.82 -0.10 1.84 16 16 N -0.88 -23.67 12.12 55.43 0.67 -23.00 16 17 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.21 -4.35 9.96 -26.70 -0.27 -4.62 16 22 C -0.13 -2.96 8.90 -26.70 -0.24 -3.20 16 23 C 0.07 0.75 5.98 -3.71 -0.02 0.73 16 24 C -0.13 -1.08 5.30 -26.61 -0.14 -1.22 16 25 C -0.08 -0.62 2.14 -91.73 -0.20 -0.82 16 26 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 27 C 0.48 4.17 7.33 36.01 0.26 4.44 16 28 O -0.51 -5.73 14.33 -18.75 -0.27 -6.00 16 29 O -0.52 -3.28 13.30 -39.25 -0.52 -3.80 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.82 5.41 -51.93 -0.28 0.54 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 1.16 7.01 -51.93 -0.36 0.79 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.41 7.96 7.81 -40.82 -0.32 7.64 16 36 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.09 2.25 7.81 -51.93 -0.41 1.84 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.15 1.96 4.31 -54.81 -0.24 1.72 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 47 H 0.41 0.99 9.10 45.56 0.41 1.41 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -30.16 384.35 -7.58 -37.75 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.23 Total: 10.04 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.32 Total: 3.34 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.18 Total: -43.86 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.63 Total: -28.55 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.16 -7.58 -37.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599940791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.714 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds