Wall clock time and date at job start Tue Mar 31 2020 20:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.49598 * 2 1 4 4 C 1.53194 * 109.50400 * 120.06623 * 2 1 3 5 5 N 1.46926 * 108.77725 * 174.58494 * 4 2 1 6 6 C 1.34771 * 120.62944 * 126.36939 * 5 4 2 7 7 O 1.21356 * 120.00402 * 351.30132 * 6 5 4 8 8 C 1.49448 * 120.00092 * 171.29864 * 6 5 4 9 9 O 1.21345 * 120.00234 * 353.55647 * 8 6 5 10 10 N 1.34775 * 120.00065 * 173.55905 * 8 6 5 11 11 C 1.46504 * 119.99933 * 184.41428 * 10 8 6 12 12 C 1.53010 * 109.47067 * 175.11521 * 11 10 8 13 13 C 1.50691 * 115.54879 * 65.09707 * 12 11 10 14 14 H 1.08000 * 120.00234 * 271.43796 * 13 12 11 15 15 C 1.37879 * 120.00033 * 91.44389 * 13 12 11 16 16 N 1.31515 * 119.99872 * 3.94197 * 15 13 12 17 17 Si 1.86799 * 120.00334 * 183.95010 * 15 13 12 18 18 H 1.48496 * 109.47127 * 89.99571 * 17 15 13 19 19 H 1.48499 * 109.47139 * 210.00023 * 17 15 13 20 20 H 1.48503 * 109.46807 * 329.99302 * 17 15 13 21 21 C 1.52997 * 117.49442 * 279.42717 * 12 11 10 22 22 C 1.53000 * 117.49447 * 210.77329 * 12 11 10 23 23 C 1.46921 * 118.73994 * 306.39420 * 5 4 2 24 24 C 1.53189 * 108.77979 * 53.60573 * 23 5 4 25 25 C 1.53042 * 109.49633 * 239.90504 * 2 1 3 26 26 H 1.08996 * 109.46113 * 298.70233 * 25 2 1 27 27 C 1.50703 * 109.46190 * 58.66060 * 25 2 1 28 28 O 1.20829 * 119.99569 * 0.02562 * 27 25 2 29 29 O 1.34228 * 120.00101 * 180.02562 * 27 25 2 30 30 H 1.09004 * 109.46466 * 299.93108 * 1 2 3 31 31 H 1.08994 * 109.47771 * 59.93299 * 1 2 3 32 32 H 1.09004 * 109.47141 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58304 * 294.37695 * 4 2 1 34 34 H 1.08998 * 109.58272 * 54.79540 * 4 2 1 35 35 H 0.97004 * 120.00317 * 4.40589 * 10 8 6 36 36 H 1.08997 * 109.47012 * 295.11069 * 11 10 8 37 37 H 1.08999 * 109.47232 * 55.11542 * 11 10 8 38 38 H 0.96996 * 120.00327 * 185.00353 * 16 15 13 39 39 H 1.08998 * 117.50306 * 0.02562 * 21 12 11 40 40 H 1.09005 * 117.49592 * 145.02319 * 21 12 11 41 41 H 1.09000 * 117.49124 * 214.97999 * 22 12 11 42 42 H 1.09000 * 117.50044 * 359.97438 * 22 12 11 43 43 H 1.09000 * 109.59090 * 173.39744 * 23 5 4 44 44 H 1.09007 * 109.58615 * 293.67955 * 23 5 4 45 45 H 1.09003 * 109.49603 * 65.31482 * 24 23 5 46 46 H 1.08998 * 109.50259 * 185.38504 * 24 23 5 47 47 H 0.96704 * 116.99306 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 1.2497 5 7 3.5047 -0.8288 1.1696 6 6 4.2813 -0.3850 2.1778 7 8 3.7896 0.2474 3.0894 8 6 5.7480 -0.6716 2.1731 9 8 6.2211 -1.4008 1.3264 10 7 6.5454 -0.1201 3.1093 11 6 7.9951 -0.3223 3.0481 12 6 8.6718 0.5020 4.1453 13 6 8.3478 0.0926 5.5589 14 1 7.4922 0.5185 6.0619 15 6 9.1438 -0.8257 6.2103 16 7 10.2291 -1.2859 5.6273 17 14 8.6806 -1.4162 7.9209 18 1 7.8133 -2.6167 7.8122 19 1 9.9120 -1.7618 8.6756 20 1 7.9484 -0.3394 8.6349 21 6 8.8942 1.9913 3.8744 22 6 10.0821 1.0260 3.8670 23 6 4.1053 -1.4266 -0.0306 24 6 3.5708 -0.6953 -1.2660 25 6 2.0407 -0.7234 -1.2482 26 1 1.6967 -1.7575 -1.2349 27 6 1.5117 -0.0344 -2.4796 28 8 0.7997 0.9357 -2.3702 29 8 1.8313 -0.4984 -3.6979 30 1 -0.3632 0.5128 0.8907 31 1 -0.3634 0.5148 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1574 2.1389 34 1 1.6054 -1.7212 1.2984 35 1 6.1595 0.4108 3.8235 36 1 8.2212 -1.3783 3.1954 37 1 8.3656 -0.0038 2.0737 38 1 10.7495 -1.9847 6.0535 39 1 8.5581 2.3840 2.9148 40 1 8.8066 2.6750 4.7189 41 1 10.7755 1.0749 4.7066 42 1 10.5280 0.7832 2.9025 43 1 5.1896 -1.3245 0.0138 44 1 3.8397 -2.4824 -0.0850 45 1 3.9158 0.3386 -1.2543 46 1 3.9338 -1.1899 -2.1670 47 1 1.4677 -0.0235 -4.4578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599940791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:09 Heat of formation + Delta-G solvation = -147.667285 kcal Electronic energy + Delta-G solvation = -29974.153377 eV Core-core repulsion = 25736.266169 eV Total energy + Delta-G solvation = -4237.887209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.19744 -41.42580 -39.88411 -38.66496 -38.49491 -37.15182 -35.43027 -34.46228 -33.92087 -33.16759 -29.07636 -28.22447 -27.87525 -27.13703 -24.46765 -23.46484 -23.04684 -22.81983 -21.50608 -21.15593 -20.49873 -19.02975 -18.77781 -18.14897 -17.96147 -17.70197 -17.16624 -16.73249 -16.64964 -16.54352 -16.05794 -15.69203 -15.52627 -15.27765 -14.94207 -14.75104 -14.49860 -14.36663 -14.18774 -13.80802 -13.61472 -13.45345 -13.18244 -12.98270 -12.96700 -12.87781 -12.81381 -12.52293 -12.37567 -12.29915 -12.01877 -11.99732 -11.85827 -11.57667 -11.38213 -11.27258 -11.00491 -10.41964 -10.40309 -10.02294 -9.96216 -9.82112 -8.11178 -6.24426 0.34584 1.18535 1.31000 1.41418 1.44498 1.52094 2.05960 2.16096 2.41911 2.52079 3.16156 3.29060 3.45063 3.58788 3.63418 3.83807 3.93088 4.20285 4.21419 4.27325 4.37261 4.52597 4.53257 4.61869 4.62208 4.65505 4.65765 4.70002 4.82060 4.87295 4.99123 5.03830 5.06946 5.08722 5.22394 5.24898 5.31380 5.34920 5.53193 5.56658 5.72557 5.73060 5.76794 5.95460 6.32791 6.36825 6.72562 6.82686 6.98694 7.01788 7.45207 8.95371 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.002493 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.950664 B =11228.653690 C =11768.451871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.082 4.082 3 H 0.061 0.939 4 C 0.113 3.887 5 N -0.580 5.580 6 C 0.511 3.489 7 O -0.545 6.545 8 C 0.498 3.502 9 O -0.537 6.537 10 N -0.669 5.669 11 C 0.175 3.825 12 C -0.005 4.005 13 C -0.509 4.509 14 H 0.056 0.944 15 C 0.030 3.970 16 N -0.902 5.902 17 Si 0.944 3.056 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.269 1.269 21 C -0.185 4.185 22 C -0.139 4.139 23 C 0.069 3.931 24 C -0.117 4.117 25 C -0.076 4.076 26 H 0.139 0.861 27 C 0.490 3.510 28 O -0.541 6.541 29 O -0.509 6.509 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.414 0.586 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.113 0.887 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.368 -1.139 -17.548 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.102 4.102 3 H 0.079 0.921 4 C -0.009 4.009 5 N -0.313 5.313 6 C 0.293 3.707 7 O -0.423 6.423 8 C 0.279 3.721 9 O -0.417 6.417 10 N -0.318 5.318 11 C 0.052 3.948 12 C -0.006 4.006 13 C -0.547 4.547 14 H 0.074 0.926 15 C -0.172 4.172 16 N -0.539 5.539 17 Si 0.770 3.230 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.223 4.223 22 C -0.177 4.177 23 C -0.052 4.052 24 C -0.155 4.155 25 C -0.094 4.094 26 H 0.156 0.844 27 C 0.334 3.666 28 O -0.431 6.431 29 O -0.323 6.323 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.250 0.750 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.147 0.853 44 H 0.113 0.887 45 H 0.077 0.923 46 H 0.131 0.869 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -17.104 -1.327 -17.238 24.320 hybrid contribution -0.263 0.240 0.954 1.019 sum -17.367 -1.086 -16.284 23.832 Atomic orbital electron populations 1.22005 0.92568 1.03221 1.03478 1.21279 0.97588 0.99040 0.92273 0.92058 1.21980 0.77340 1.02678 0.98868 1.48069 1.07202 1.58295 1.17704 1.20076 0.87438 0.79965 0.83190 1.90742 1.75150 1.39347 1.37039 1.20280 0.87794 0.81447 0.82577 1.90446 1.76199 1.37488 1.37604 1.45868 1.08013 1.50250 1.27703 1.20873 0.77349 0.99312 0.97268 1.19091 0.96743 0.91252 0.93485 1.20660 1.11436 1.25405 0.97166 0.92626 1.25605 0.94165 0.96779 1.00606 1.70095 1.15344 1.27802 1.40659 0.85774 0.77509 0.78726 0.80970 1.20552 1.21168 1.19395 1.23044 1.04419 0.93617 1.01182 1.22355 0.91587 1.03659 1.00071 1.22942 1.03096 0.97841 0.81279 1.21916 0.91972 1.01938 0.99704 1.21201 0.97301 1.02391 0.88549 0.84360 1.23521 0.76332 0.81375 0.85413 1.90670 1.36961 1.27988 1.87499 1.84503 1.71199 1.59679 1.16917 0.92128 0.90986 0.90820 0.89455 0.87914 0.74991 0.93879 0.92212 0.93059 0.89223 0.90345 0.91536 0.90502 0.85328 0.88712 0.92292 0.86913 0.71148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.86 71.98 0.64 -1.63 16 2 C -0.08 -1.37 2.06 -10.72 -0.02 -1.39 16 3 H 0.06 1.32 8.13 -2.39 -0.02 1.31 16 4 C 0.11 2.07 5.73 86.36 0.49 2.57 16 5 N -0.58 -13.61 2.97 -820.50 -2.44 -16.04 16 6 C 0.51 16.00 7.73 87.27 0.67 16.68 16 7 O -0.55 -19.54 15.93 -3.27 -0.05 -19.59 16 8 C 0.50 17.42 7.74 87.27 0.68 18.09 16 9 O -0.54 -19.23 13.18 -3.23 -0.04 -19.27 16 10 N -0.67 -25.64 5.47 -464.40 -2.54 -28.18 16 11 C 0.18 7.44 5.51 86.38 0.48 7.92 16 12 C 0.00 -0.23 1.59 -52.93 -0.08 -0.31 16 13 C -0.51 -26.27 8.63 25.60 0.22 -26.05 16 14 H 0.06 2.87 7.82 -2.91 -0.02 2.84 16 15 C 0.03 1.56 5.41 84.65 0.46 2.02 16 16 N -0.90 -49.60 12.12 21.45 0.26 -49.34 16 17 Si 0.94 42.53 29.54 68.60 2.03 44.55 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C -0.19 -7.44 9.96 30.62 0.30 -7.13 16 22 C -0.14 -6.19 8.90 30.62 0.27 -5.91 16 23 C 0.07 1.32 5.98 86.36 0.52 1.83 16 24 C -0.12 -1.71 5.30 30.67 0.16 -1.55 16 25 C -0.08 -0.99 2.14 -11.51 -0.02 -1.02 16 26 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 27 C 0.49 7.28 7.33 71.24 0.52 7.81 16 28 O -0.54 -11.43 14.33 21.96 0.31 -11.12 16 29 O -0.51 -4.95 13.30 -51.40 -0.68 -5.64 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.07 1.30 5.41 -2.39 -0.01 1.29 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.91 7.01 -2.39 -0.02 1.90 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.41 16.04 7.81 -92.71 -0.72 15.31 16 36 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 2.37 8.09 -2.39 -0.02 2.35 16 38 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 39 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 40 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 41 H 0.07 3.30 7.81 -2.39 -0.02 3.28 16 42 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.13 3.17 4.31 -47.96 -0.21 2.96 16 44 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 46 H 0.11 1.24 8.08 -2.39 -0.02 1.22 16 47 H 0.43 0.90 9.10 -74.05 -0.67 0.23 16 Total: -1.00 -65.57 384.35 1.55 -64.02 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.58 Total: 28.71 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.29 Total: 11.91 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -4.72 Total: -93.57 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -0.46 Total: -55.62 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -65.57 1.55 -64.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599940791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.645 kcal (2) G-P(sol) polarization free energy of solvation -65.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds