Wall clock time and date at job start Tue Mar 31 2020 21:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47305 * 2 1 4 4 C 1.50699 * 109.46968 * 119.99602 * 2 1 3 5 5 O 1.21281 * 120.00061 * 90.91234 * 4 2 1 6 6 N 1.34780 * 120.00174 * 270.90902 * 4 2 1 7 7 C 1.46498 * 119.99724 * 7.43255 * 6 4 2 8 8 C 1.46499 * 120.00268 * 187.43468 * 6 4 2 9 9 C 1.50698 * 109.47069 * 270.00095 * 8 6 4 10 10 H 1.08002 * 119.99779 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00247 * 179.72442 * 9 8 6 12 12 N 1.31511 * 120.00269 * 180.27218 * 11 9 8 13 13 Si 1.86806 * 119.99940 * 0.27220 * 11 9 8 14 14 H 1.48507 * 109.47097 * 89.99994 * 13 11 9 15 15 H 1.48496 * 109.47418 * 209.99908 * 13 11 9 16 16 H 1.48502 * 109.46801 * 330.00146 * 13 11 9 17 17 N 1.46901 * 109.47475 * 239.99713 * 2 1 3 18 18 C 1.47015 * 110.99549 * 313.90964 * 17 2 1 19 19 C 1.53102 * 109.25642 * 182.38879 * 18 17 2 20 20 H 1.08997 * 109.50116 * 63.09019 * 19 18 17 21 21 C 1.52999 * 109.50459 * 183.21540 * 19 18 17 22 22 O 1.43009 * 109.25950 * 303.15485 * 19 18 17 23 23 C 1.43016 * 113.74254 * 58.66621 * 22 19 18 24 24 H 1.09000 * 109.50652 * 61.26425 * 23 22 19 25 25 C 1.52999 * 109.54715 * 181.37302 * 23 22 19 26 26 F 1.39892 * 109.47232 * 179.80628 * 25 23 22 27 27 F 1.39902 * 109.46903 * 299.81018 * 25 23 22 28 28 F 1.39902 * 109.46813 * 59.80366 * 25 23 22 29 29 C 1.47010 * 110.99834 * 77.54114 * 17 2 1 30 30 H 1.08997 * 109.47370 * 178.91232 * 1 2 3 31 31 H 1.09000 * 109.47443 * 298.91500 * 1 2 3 32 32 H 1.09003 * 109.46993 * 58.91104 * 1 2 3 33 33 H 1.09002 * 109.47316 * 275.45819 * 7 6 4 34 34 H 1.09001 * 109.47468 * 35.46373 * 7 6 4 35 35 H 1.09008 * 109.46916 * 155.46389 * 7 6 4 36 36 H 1.08999 * 109.47499 * 150.00198 * 8 6 4 37 37 H 1.09002 * 109.47037 * 29.99510 * 8 6 4 38 38 H 0.97004 * 120.00184 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.50851 * 302.32474 * 18 17 2 40 40 H 1.08998 * 109.51035 * 62.45723 * 18 17 2 41 41 H 1.09004 * 109.46572 * 179.78503 * 21 19 18 42 42 H 1.08997 * 109.47531 * 299.78230 * 21 19 18 43 43 H 1.08997 * 109.46736 * 59.78844 * 21 19 18 44 44 H 1.08999 * 109.51227 * 297.54679 * 29 17 2 45 45 H 1.09001 * 109.50627 * 57.67966 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.2502 -1.9029 1.1958 6 7 2.2394 -0.0203 2.3696 7 6 1.8247 1.3817 2.4624 8 6 2.8793 -0.6723 3.5149 9 6 1.8250 -1.3043 4.3867 10 1 0.7826 -1.2276 4.1150 11 6 2.1916 -1.9849 5.5283 12 7 1.2720 -2.5410 6.2863 13 14 3.9947 -2.1170 5.9986 14 1 4.3662 -0.9680 6.8631 15 1 4.2222 -3.3854 6.7364 16 1 4.8289 -2.1023 4.7702 17 7 2.0197 -0.6925 -1.1994 18 6 1.2979 -1.9559 -1.4098 19 6 1.8787 -2.6717 -2.6322 20 1 2.9211 -2.9276 -2.4428 21 6 1.0797 -3.9478 -2.9044 22 8 1.7982 -1.8064 -3.7680 23 6 2.4908 -0.5668 -3.5977 24 1 3.5511 -0.7615 -3.4364 25 6 2.3143 0.2944 -4.8499 26 9 2.9887 1.5082 -4.6800 27 9 2.8396 -0.3799 -5.9575 28 9 0.9531 0.5422 -5.0574 29 6 1.9162 0.1703 -2.3851 30 1 -0.3634 -1.0274 -0.0195 31 1 -0.3634 0.4969 0.8995 32 1 -0.3633 0.5307 -0.8801 33 1 2.6057 2.0197 2.0487 34 1 0.9020 1.5257 1.9003 35 1 1.6580 1.6428 3.5075 36 1 3.4321 0.0685 4.0926 37 1 3.5651 -1.4411 3.1589 38 1 1.5299 -3.0201 7.0893 39 1 1.4092 -2.5896 -0.5300 40 1 0.2413 -1.7478 -1.5779 41 1 1.4914 -4.4549 -3.7771 42 1 1.1415 -4.6069 -2.0385 43 1 0.0372 -3.6907 -3.0917 44 1 0.8695 0.4125 -2.5689 45 1 2.4789 1.0887 -2.2172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610410778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:21 Heat of formation + Delta-G solvation = -211.361384 kcal Electronic energy + Delta-G solvation = -31583.692585 eV Core-core repulsion = 26801.186653 eV Total energy + Delta-G solvation = -4782.505932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.38199 -47.91775 -47.83188 -40.54746 -39.01223 -36.28193 -34.94923 -33.52485 -32.63507 -31.35910 -29.26990 -28.33139 -26.76852 -26.18268 -25.33181 -23.53037 -22.68342 -21.68559 -20.48978 -18.85568 -18.65451 -18.59120 -17.96481 -17.00902 -16.87212 -16.43496 -16.04249 -15.70411 -15.29487 -14.84686 -14.74925 -14.62357 -14.50744 -14.33317 -14.26614 -14.01232 -13.99341 -13.90822 -13.64114 -13.27691 -13.00121 -12.83659 -12.49287 -12.39090 -12.29932 -12.20263 -12.00257 -11.80006 -11.71431 -11.61306 -11.42936 -11.27619 -10.90838 -10.76717 -10.55835 -10.13909 -10.07542 -9.57154 -9.06270 -8.62181 -8.38813 -7.75134 -6.11453 -4.10242 2.15474 2.92263 3.11935 3.24622 3.31677 3.34777 3.36925 3.64924 3.71476 4.03435 4.17574 4.36222 4.37084 4.58302 4.69549 4.79872 4.95086 5.01558 5.03950 5.09667 5.12168 5.22174 5.26577 5.44929 5.49414 5.55476 5.60263 5.66392 5.77320 5.80025 5.93296 6.00477 6.04339 6.16143 6.56097 6.62955 6.71737 6.82382 6.94056 7.28936 7.57856 8.18691 8.43554 8.88785 8.94023 9.48773 11.01930 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002951 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.715751 B = 9485.547158 C = 9968.152525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.065 3.935 3 H 0.101 0.899 4 C 0.521 3.479 5 O -0.524 6.524 6 N -0.597 5.597 7 C 0.080 3.920 8 C 0.218 3.782 9 C -0.527 4.527 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.875 3.125 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.264 1.264 17 N -0.512 5.512 18 C 0.008 3.992 19 C 0.094 3.906 20 H 0.075 0.925 21 C -0.143 4.143 22 O -0.368 6.368 23 C 0.055 3.945 24 H 0.111 0.889 25 C 0.467 3.533 26 F -0.175 7.175 27 F -0.175 7.175 28 F -0.175 7.175 29 C 0.019 3.981 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.039 0.961 38 H 0.264 0.736 39 H 0.125 0.875 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 7.569 -20.982 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.046 4.046 3 H 0.118 0.882 4 C 0.306 3.694 5 O -0.400 6.400 6 N -0.330 5.330 7 C -0.064 4.064 8 C 0.098 3.902 9 C -0.566 4.566 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.701 3.299 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.189 1.189 17 N -0.236 5.236 18 C -0.119 4.119 19 C 0.037 3.963 20 H 0.093 0.907 21 C -0.200 4.200 22 O -0.287 6.287 23 C -0.005 4.005 24 H 0.129 0.871 25 C 0.412 3.588 26 F -0.156 7.156 27 F -0.156 7.156 28 F -0.157 7.157 29 C -0.110 4.110 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.358 6.673 -20.917 21.997 hybrid contribution 0.070 0.491 0.352 0.608 sum 1.429 7.164 -20.565 21.823 Atomic orbital electron populations 1.22378 0.94846 1.03812 1.02970 1.21711 0.94778 0.98436 0.89710 0.88153 1.19926 0.78546 0.87368 0.83558 1.90586 1.51058 1.14529 1.83863 1.47785 1.59861 1.11507 1.13814 1.21726 0.98607 0.82501 1.03526 1.19668 0.94031 0.93117 0.83425 1.21313 0.94594 1.34088 1.06581 0.90823 1.24861 0.97366 0.94755 0.96057 1.69894 1.33028 1.35606 1.15080 0.86869 0.85899 0.77967 0.79122 1.20117 1.20946 1.18853 1.62056 1.56385 1.04210 1.00919 1.23283 0.95919 0.91945 1.00784 1.22370 1.00724 0.89599 0.83592 0.90653 1.21747 1.00371 0.94879 1.03021 1.87964 1.74252 1.26257 1.40253 1.23044 1.00506 0.86520 0.90479 0.87125 1.20101 0.74179 0.79048 0.85430 1.93205 1.80400 1.46502 1.95496 1.93211 1.86416 1.79890 1.56086 1.93201 1.32299 1.94550 1.95616 1.22747 1.01338 0.96880 0.90001 0.90932 0.90718 0.91869 0.93627 0.92334 0.90230 0.95642 0.94254 0.92563 0.85677 0.93285 0.91474 0.89952 0.91719 0.92295 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 8.09 37.16 0.30 -1.93 16 2 C 0.07 0.90 1.89 -68.87 -0.13 0.77 16 3 H 0.10 1.15 6.86 -51.93 -0.36 0.80 16 4 C 0.52 9.92 6.80 -10.98 -0.07 9.85 16 5 O -0.52 -12.02 13.90 5.56 0.08 -11.94 16 6 N -0.60 -11.68 2.86 -182.95 -0.52 -12.20 16 7 C 0.08 1.15 9.57 59.85 0.57 1.72 16 8 C 0.22 5.16 4.15 -5.20 -0.02 5.14 16 9 C -0.53 -14.79 9.94 -34.44 -0.34 -15.13 16 10 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 11 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 12 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 13 Si 0.87 21.16 27.47 -169.99 -4.67 16.49 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 17 N -0.51 -6.74 4.52 -227.72 -1.03 -7.77 16 18 C 0.01 0.11 3.77 -3.71 -0.01 0.09 16 19 C 0.09 1.10 3.43 -26.68 -0.09 1.01 16 20 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.14 -1.41 9.57 37.16 0.36 -1.05 16 22 O -0.37 -4.37 10.00 -35.23 -0.35 -4.73 16 23 C 0.05 0.57 2.78 -26.68 -0.07 0.50 16 24 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 25 C 0.47 4.78 2.85 37.16 0.11 4.88 16 26 F -0.17 -1.68 16.86 2.25 0.04 -1.64 16 27 F -0.17 -1.93 17.26 2.25 0.04 -1.89 16 28 F -0.18 -1.94 16.69 2.25 0.04 -1.91 16 29 C 0.02 0.20 4.49 -3.71 -0.02 0.18 16 30 H 0.07 0.99 6.31 -51.93 -0.33 0.66 16 31 H 0.07 0.91 6.61 -51.93 -0.34 0.57 16 32 H 0.06 0.64 7.11 -51.93 -0.37 0.27 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.70 5.58 -51.93 -0.29 0.41 16 35 H 0.08 1.19 8.03 -51.92 -0.42 0.77 16 36 H 0.03 0.57 7.51 -51.93 -0.39 0.18 16 37 H 0.04 1.01 6.59 -51.93 -0.34 0.67 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.13 2.04 5.73 -51.93 -0.30 1.74 16 40 H 0.05 0.62 6.35 -51.93 -0.33 0.29 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.61 6.67 -51.93 -0.35 0.26 16 45 H 0.10 0.88 7.79 -51.93 -0.40 0.47 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -32.87 363.43 -6.00 -38.87 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.34 Total: -0.24 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 0.47 Total: 8.00 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.78 Total: -46.49 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.28 Total: -16.67 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.11 Total: -5.44 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.87 -6.00 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610410778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.492 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds