Wall clock time and date at job start Tue Mar 31 2020 21:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47305 * 2 1 4 4 C 1.50699 * 109.46968 * 119.99602 * 2 1 3 5 5 O 1.21281 * 120.00061 * 90.91234 * 4 2 1 6 6 N 1.34780 * 120.00174 * 270.90902 * 4 2 1 7 7 C 1.46498 * 119.99724 * 7.43255 * 6 4 2 8 8 C 1.46499 * 120.00268 * 187.43468 * 6 4 2 9 9 C 1.50698 * 109.47069 * 270.00095 * 8 6 4 10 10 H 1.08002 * 119.99779 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00247 * 179.72442 * 9 8 6 12 12 N 1.31511 * 120.00269 * 180.27218 * 11 9 8 13 13 Si 1.86806 * 119.99940 * 0.27220 * 11 9 8 14 14 H 1.48507 * 109.47097 * 89.99994 * 13 11 9 15 15 H 1.48496 * 109.47418 * 209.99908 * 13 11 9 16 16 H 1.48502 * 109.46801 * 330.00146 * 13 11 9 17 17 N 1.46901 * 109.47475 * 239.99713 * 2 1 3 18 18 C 1.47015 * 110.99549 * 313.90964 * 17 2 1 19 19 C 1.53102 * 109.25642 * 182.38879 * 18 17 2 20 20 H 1.08997 * 109.50116 * 63.09019 * 19 18 17 21 21 C 1.52999 * 109.50459 * 183.21540 * 19 18 17 22 22 O 1.43009 * 109.25950 * 303.15485 * 19 18 17 23 23 C 1.43016 * 113.74254 * 58.66621 * 22 19 18 24 24 H 1.09000 * 109.50652 * 61.26425 * 23 22 19 25 25 C 1.52999 * 109.54715 * 181.37302 * 23 22 19 26 26 F 1.39892 * 109.47232 * 179.80628 * 25 23 22 27 27 F 1.39902 * 109.46903 * 299.81018 * 25 23 22 28 28 F 1.39902 * 109.46813 * 59.80366 * 25 23 22 29 29 C 1.47010 * 110.99834 * 77.54114 * 17 2 1 30 30 H 1.08997 * 109.47370 * 178.91232 * 1 2 3 31 31 H 1.09000 * 109.47443 * 298.91500 * 1 2 3 32 32 H 1.09003 * 109.46993 * 58.91104 * 1 2 3 33 33 H 1.09002 * 109.47316 * 275.45819 * 7 6 4 34 34 H 1.09001 * 109.47468 * 35.46373 * 7 6 4 35 35 H 1.09008 * 109.46916 * 155.46389 * 7 6 4 36 36 H 1.08999 * 109.47499 * 150.00198 * 8 6 4 37 37 H 1.09002 * 109.47037 * 29.99510 * 8 6 4 38 38 H 0.97004 * 120.00184 * 179.97438 * 12 11 9 39 39 H 1.08998 * 109.50851 * 302.32474 * 18 17 2 40 40 H 1.08998 * 109.51035 * 62.45723 * 18 17 2 41 41 H 1.09004 * 109.46572 * 179.78503 * 21 19 18 42 42 H 1.08997 * 109.47531 * 299.78230 * 21 19 18 43 43 H 1.08997 * 109.46736 * 59.78844 * 21 19 18 44 44 H 1.08999 * 109.51227 * 297.54679 * 29 17 2 45 45 H 1.09001 * 109.50627 * 57.67966 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.2502 -1.9029 1.1958 6 7 2.2394 -0.0203 2.3696 7 6 1.8247 1.3817 2.4624 8 6 2.8793 -0.6723 3.5149 9 6 1.8250 -1.3043 4.3867 10 1 0.7826 -1.2276 4.1150 11 6 2.1916 -1.9849 5.5283 12 7 1.2720 -2.5410 6.2863 13 14 3.9947 -2.1170 5.9986 14 1 4.3662 -0.9680 6.8631 15 1 4.2222 -3.3854 6.7364 16 1 4.8289 -2.1023 4.7702 17 7 2.0197 -0.6925 -1.1994 18 6 1.2979 -1.9559 -1.4098 19 6 1.8787 -2.6717 -2.6322 20 1 2.9211 -2.9276 -2.4428 21 6 1.0797 -3.9478 -2.9044 22 8 1.7982 -1.8064 -3.7680 23 6 2.4908 -0.5668 -3.5977 24 1 3.5511 -0.7615 -3.4364 25 6 2.3143 0.2944 -4.8499 26 9 2.9887 1.5082 -4.6800 27 9 2.8396 -0.3799 -5.9575 28 9 0.9531 0.5422 -5.0574 29 6 1.9162 0.1703 -2.3851 30 1 -0.3634 -1.0274 -0.0195 31 1 -0.3634 0.4969 0.8995 32 1 -0.3633 0.5307 -0.8801 33 1 2.6057 2.0197 2.0487 34 1 0.9020 1.5257 1.9003 35 1 1.6580 1.6428 3.5075 36 1 3.4321 0.0685 4.0926 37 1 3.5651 -1.4411 3.1589 38 1 1.5299 -3.0201 7.0893 39 1 1.4092 -2.5896 -0.5300 40 1 0.2413 -1.7478 -1.5779 41 1 1.4914 -4.4549 -3.7771 42 1 1.1415 -4.6069 -2.0385 43 1 0.0372 -3.6907 -3.0917 44 1 0.8695 0.4125 -2.5689 45 1 2.4789 1.0887 -2.2172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610410778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:20 Heat of formation + Delta-G solvation = -235.202782 kcal Electronic energy + Delta-G solvation = -31584.726426 eV Core-core repulsion = 26801.186653 eV Total energy + Delta-G solvation = -4783.539773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.18557 -48.70374 -48.66012 -41.63996 -40.27666 -37.40773 -36.52177 -34.70270 -34.39368 -32.50307 -30.51717 -29.78392 -27.73004 -27.42329 -26.42199 -25.04042 -23.57598 -23.07314 -21.49304 -19.96576 -19.66998 -19.43103 -19.11763 -18.88226 -18.12486 -17.45783 -17.14194 -16.89573 -16.45632 -16.22257 -16.02686 -15.69925 -15.43798 -15.38721 -15.20719 -15.08735 -14.81874 -14.80549 -14.71868 -14.61929 -14.29092 -14.08893 -13.73622 -13.66134 -13.47977 -13.38484 -13.23643 -13.09193 -12.93349 -12.64555 -12.61004 -12.43920 -12.35079 -12.19953 -12.00572 -11.74653 -11.70007 -11.04977 -10.80901 -10.40988 -9.48029 -9.33832 -8.32618 -6.37207 1.32836 1.32900 1.37466 1.47835 1.74504 2.04755 2.24119 2.32276 2.60269 2.86497 3.00246 3.01843 3.36964 3.53192 3.55952 3.75610 3.85330 3.94857 4.01352 4.06288 4.18167 4.27420 4.35017 4.47213 4.55271 4.59168 4.64622 4.68635 4.78862 4.82191 4.84927 4.93665 4.97478 4.98568 5.12502 5.20783 5.47571 5.63695 5.67200 5.73010 5.87609 6.25654 6.64098 6.73214 7.23796 7.46044 8.84395 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002951 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.715751 B = 9485.547158 C = 9968.152525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 H 0.135 0.865 4 C 0.509 3.491 5 O -0.575 6.575 6 N -0.608 5.608 7 C 0.073 3.927 8 C 0.227 3.773 9 C -0.532 4.532 10 H 0.027 0.973 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.948 3.052 14 H -0.252 1.252 15 H -0.284 1.284 16 H -0.255 1.255 17 N -0.525 5.525 18 C 0.014 3.986 19 C 0.098 3.902 20 H 0.069 0.931 21 C -0.140 4.140 22 O -0.375 6.375 23 C 0.052 3.948 24 H 0.120 0.880 25 C 0.474 3.526 26 F -0.168 7.168 27 F -0.180 7.180 28 F -0.180 7.180 29 C 0.021 3.979 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.018 0.982 38 H 0.267 0.733 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 9.852 -22.467 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.033 4.033 3 H 0.152 0.848 4 C 0.296 3.704 5 O -0.454 6.454 6 N -0.340 5.340 7 C -0.069 4.069 8 C 0.104 3.896 9 C -0.570 4.570 10 H 0.046 0.954 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.771 3.229 14 H -0.176 1.176 15 H -0.210 1.210 16 H -0.179 1.179 17 N -0.249 5.249 18 C -0.114 4.114 19 C 0.041 3.959 20 H 0.087 0.913 21 C -0.197 4.197 22 O -0.294 6.294 23 C -0.008 4.008 24 H 0.138 0.862 25 C 0.419 3.581 26 F -0.150 7.150 27 F -0.161 7.161 28 F -0.161 7.161 29 C -0.106 4.106 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.653 9.017 -22.429 24.318 hybrid contribution -0.425 -0.213 0.774 0.909 sum 2.229 8.804 -21.654 23.482 Atomic orbital electron populations 1.22352 0.93748 1.02972 1.04437 1.21635 0.95364 0.98990 0.87333 0.84785 1.20992 0.77414 0.87087 0.84861 1.90569 1.53024 1.16942 1.84870 1.47911 1.59700 1.13512 1.12834 1.22035 1.01111 0.79902 1.03842 1.19313 0.92654 0.93272 0.84359 1.21556 0.93660 1.34425 1.07397 0.95437 1.25858 1.02703 0.94254 0.96006 1.70055 1.35745 1.36992 1.15934 0.85711 0.79385 0.78615 0.79227 1.17598 1.20982 1.17888 1.61967 1.56580 1.04559 1.01781 1.23102 0.96376 0.91991 0.99931 1.22314 1.00494 0.90013 0.83059 0.91282 1.21740 1.00345 0.94202 1.03437 1.87954 1.74538 1.26877 1.40080 1.23161 1.00959 0.86051 0.90659 0.86240 1.19978 0.73947 0.79085 0.85054 1.93220 1.80236 1.46074 1.95432 1.93203 1.86478 1.80083 1.56383 1.93196 1.32705 1.94579 1.95630 1.22834 1.02243 0.97024 0.88546 0.93085 0.90668 0.88786 0.89808 0.89852 0.91220 0.93340 0.96391 0.92364 0.89210 0.92905 0.90346 0.90102 0.91449 0.91594 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.09 71.98 0.58 -3.43 16 2 C 0.08 1.98 1.89 44.17 0.08 2.06 16 3 H 0.13 2.49 6.86 -2.38 -0.02 2.48 16 4 C 0.51 19.31 6.80 87.66 0.60 19.91 16 5 O -0.57 -27.34 13.90 -3.03 -0.04 -27.39 16 6 N -0.61 -23.32 2.86 -851.12 -2.43 -25.76 16 7 C 0.07 1.90 9.57 127.77 1.22 3.12 16 8 C 0.23 10.72 4.15 85.63 0.36 11.08 16 9 C -0.53 -30.79 9.94 25.60 0.25 -30.54 16 10 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 11 C 0.01 0.56 5.47 84.65 0.46 1.02 16 12 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 13 Si 0.95 43.88 27.47 68.60 1.88 45.76 16 14 H -0.25 -10.66 7.11 99.48 0.71 -9.95 16 15 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 16 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 17 N -0.52 -12.93 4.52 -874.37 -3.95 -16.88 16 18 C 0.01 0.36 3.77 86.32 0.33 0.69 16 19 C 0.10 2.25 3.43 30.63 0.10 2.36 16 20 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 21 C -0.14 -2.71 9.57 71.98 0.69 -2.02 16 22 O -0.37 -8.33 10.00 -148.98 -1.49 -9.82 16 23 C 0.05 0.96 2.78 30.63 0.09 1.04 16 24 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 25 C 0.47 8.52 2.85 71.98 0.21 8.73 16 26 F -0.17 -2.74 16.86 44.97 0.76 -1.98 16 27 F -0.18 -3.63 17.26 44.97 0.78 -2.85 16 28 F -0.18 -3.54 16.69 44.97 0.75 -2.79 16 29 C 0.02 0.38 4.49 86.32 0.39 0.77 16 30 H 0.05 1.39 6.31 -2.39 -0.02 1.37 16 31 H 0.07 1.69 6.61 -2.39 -0.02 1.68 16 32 H 0.09 1.57 7.11 -2.39 -0.02 1.56 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 1.74 5.58 -2.39 -0.01 1.73 16 35 H 0.07 1.96 8.03 -2.38 -0.02 1.94 16 36 H 0.05 2.07 7.51 -2.39 -0.02 2.06 16 37 H 0.02 0.93 6.59 -2.39 -0.02 0.91 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.09 3.09 5.73 -2.39 -0.01 3.08 16 40 H 0.05 1.33 6.35 -2.39 -0.02 1.31 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.12 6.67 -2.39 -0.02 1.10 16 45 H 0.12 1.63 7.79 -2.39 -0.02 1.61 16 Total: -1.00 -75.24 363.43 2.87 -72.37 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.96 Total: 13.74 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 5.35 Total: 14.79 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -6.08 Total: -101.84 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.53 Total: -37.20 kcal Atomic # 9 Polarization: -9.91 SS G_CDS: 2.29 Total: -7.63 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Total: -75.24 2.87 -72.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610410778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.829 kcal (2) G-P(sol) polarization free energy of solvation -75.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds