Wall clock time and date at job start Tue Mar 31 2020 21:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.46863 * 2 1 4 4 C 1.50701 * 109.47139 * 239.99524 * 2 1 3 5 5 O 1.21287 * 120.00036 * 239.99606 * 4 2 1 6 6 N 1.34774 * 119.99872 * 60.00562 * 4 2 1 7 7 C 1.46507 * 119.99847 * 180.02562 * 6 4 2 8 8 C 1.53041 * 109.45666 * 275.06482 * 7 6 4 9 9 C 1.53190 * 109.31249 * 178.61806 * 8 7 6 10 10 N 1.46919 * 108.77563 * 54.62884 * 9 8 7 11 11 C 1.36946 * 120.62791 * 126.41749 * 10 9 8 12 12 H 1.08001 * 119.99718 * 331.82372 * 11 10 9 13 13 C 1.38810 * 120.00117 * 151.82357 * 11 10 9 14 14 N 1.31622 * 119.99791 * 343.08068 * 13 11 10 15 15 Si 1.86800 * 120.00151 * 163.07926 * 13 11 10 16 16 H 1.48499 * 109.47015 * 60.00031 * 15 13 11 17 17 H 1.48501 * 109.47145 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47060 * 299.99871 * 15 13 11 19 19 C 1.46921 * 118.74373 * 306.39445 * 10 9 8 20 20 C 1.53042 * 109.46005 * 154.99640 * 7 6 4 21 21 C 1.50708 * 109.46895 * 119.99831 * 2 1 3 22 22 C 1.38411 * 120.02467 * 59.72344 * 21 2 1 23 23 F 1.35098 * 120.01642 * 0.02562 * 22 21 2 24 24 C 1.38482 * 119.97214 * 179.79081 * 22 21 2 25 25 C 1.38207 * 120.02401 * 0.49052 * 24 22 21 26 26 C 1.38212 * 120.04941 * 359.73658 * 25 24 22 27 27 C 1.38420 * 120.02311 * 239.99998 * 21 2 1 28 28 F 1.35101 * 120.01195 * 359.97438 * 27 21 2 29 29 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47614 * 300.00336 * 1 2 3 31 31 H 1.08999 * 109.47297 * 60.00916 * 1 2 3 32 32 H 0.96996 * 120.00437 * 359.97438 * 6 4 2 33 33 H 1.08996 * 109.44674 * 35.03059 * 7 6 4 34 34 H 1.09000 * 109.49517 * 298.56341 * 8 7 6 35 35 H 1.08996 * 109.49647 * 58.66163 * 8 7 6 36 36 H 1.08998 * 109.58321 * 294.84560 * 9 8 7 37 37 H 1.08995 * 109.70564 * 174.49135 * 9 8 7 38 38 H 0.96999 * 119.99934 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.58471 * 293.82056 * 19 10 9 40 40 H 1.09004 * 109.70588 * 173.46375 * 19 10 9 41 41 H 1.09005 * 109.49601 * 301.33748 * 20 7 6 42 42 H 1.09001 * 109.49579 * 61.42896 * 20 7 6 43 43 H 1.08002 * 119.98545 * 180.23265 * 24 22 21 44 44 H 1.07998 * 119.97834 * 179.77173 * 25 24 22 45 45 H 1.07997 * 119.98527 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1947 -0.9411 -3.6507 8 6 3.5985 -0.4372 -3.9936 9 6 4.1192 -1.1865 -5.2241 10 7 3.1436 -1.0427 -6.3132 11 6 3.5313 -0.5725 -7.5396 12 1 4.3729 0.0997 -7.6188 13 6 2.8425 -0.9597 -8.6808 14 7 2.0509 -2.0107 -8.6468 15 14 3.0390 0.0107 -10.2648 16 1 4.4640 -0.0068 -10.6825 17 1 2.2034 -0.6027 -11.3281 18 1 2.6055 1.4136 -10.0429 19 6 1.7443 -1.4134 -6.0618 20 6 1.2502 -0.6615 -4.8220 21 6 2.0323 -0.7104 1.2306 22 6 1.6935 -2.0339 1.4530 23 9 0.9127 -2.6897 0.5669 24 6 2.1592 -2.6869 2.5819 25 6 2.9536 -2.0146 3.4914 26 6 3.2887 -0.6917 3.2725 27 6 2.8281 -0.0382 2.1420 28 9 3.1554 1.2551 1.9287 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.1489 0.5384 -2.5436 33 1 2.2302 -2.0139 -3.4609 34 1 3.5594 0.6308 -4.2076 35 1 4.2652 -0.6156 -3.1499 36 1 4.2448 -2.2421 -4.9831 37 1 5.0762 -0.7659 -5.5328 38 1 1.5699 -2.2816 -9.4444 39 1 1.6763 -2.4875 -5.8891 40 1 1.1320 -1.1420 -6.9218 41 1 0.2455 -0.9995 -4.5678 42 1 1.2332 0.4087 -5.0281 43 1 1.8980 -3.7206 2.7538 44 1 3.3134 -2.5235 4.3734 45 1 3.9099 -0.1675 3.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611199663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:31 Heat of formation + Delta-G solvation = -85.543937 kcal Electronic energy + Delta-G solvation = -29802.087914 eV Core-core repulsion = 25455.807061 eV Total energy + Delta-G solvation = -4346.280854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.29332 -49.09988 -40.14412 -38.86848 -37.33950 -34.51560 -34.40909 -32.08867 -30.55304 -30.28504 -29.83497 -29.09572 -25.45553 -24.69024 -23.13796 -22.87331 -22.20650 -21.51688 -20.04318 -19.23183 -18.36251 -17.84980 -17.10893 -16.52797 -16.36405 -15.95750 -15.77744 -15.59689 -15.44307 -14.94654 -14.74271 -14.63396 -14.16259 -13.87808 -13.74267 -13.53741 -13.05847 -13.00963 -12.86869 -12.65313 -12.41439 -12.37157 -12.35070 -12.16861 -11.74979 -11.45436 -11.19615 -11.10197 -10.84221 -10.71262 -10.48557 -10.27756 -10.03549 -9.86291 -9.68652 -9.49175 -9.11958 -8.97751 -8.69946 -8.44931 -6.67899 -5.79154 -3.21479 0.67603 0.74144 2.75971 3.01352 3.37556 3.41179 3.44203 3.45407 3.65462 4.03545 4.16089 4.35690 4.48724 4.49803 4.77177 4.83734 4.87897 4.99032 5.30757 5.34964 5.42469 5.46221 5.49491 5.52415 5.60412 5.62334 5.68734 5.74146 5.85833 5.88464 5.90136 6.08516 6.28030 6.34804 6.48597 6.53969 6.57124 6.60357 6.80612 6.92592 7.00203 7.32087 7.59506 7.71751 7.79984 8.38253 8.45128 9.21155 9.84308 10.41566 11.29809 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.002477 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.148425 B =11299.049631 C =11506.224868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 H 0.111 0.889 4 C 0.517 3.483 5 O -0.532 6.532 6 N -0.720 5.720 7 C 0.152 3.848 8 C -0.139 4.139 9 C 0.148 3.852 10 N -0.592 5.592 11 C -0.253 4.253 12 H 0.065 0.935 13 C 0.002 3.998 14 N -0.904 5.904 15 Si 0.903 3.097 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.175 3.825 20 C -0.146 4.146 21 C -0.138 4.138 22 C 0.164 3.836 23 F -0.120 7.120 24 C -0.168 4.168 25 C -0.062 4.062 26 C -0.169 4.169 27 C 0.134 3.866 28 F -0.130 7.130 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.395 0.605 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.255 0.745 39 H 0.021 0.979 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 3.894 25.634 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.129 0.871 4 C 0.302 3.698 5 O -0.408 6.408 6 N -0.370 5.370 7 C 0.049 3.951 8 C -0.179 4.179 9 C 0.021 3.979 10 N -0.315 5.315 11 C -0.383 4.383 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.548 5.548 15 Si 0.733 3.267 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.211 1.211 19 C 0.048 3.952 20 C -0.186 4.186 21 C -0.140 4.140 22 C 0.144 3.856 23 F -0.098 7.098 24 C -0.187 4.187 25 C -0.080 4.080 26 C -0.188 4.188 27 C 0.115 3.885 28 F -0.109 7.109 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.229 0.771 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.263 3.113 25.484 25.880 hybrid contribution -0.207 1.014 -1.083 1.498 sum -3.469 4.127 24.401 24.989 Atomic orbital electron populations 1.21861 0.91433 1.03951 1.03165 1.20203 0.98292 1.00723 0.90338 0.87067 1.20181 0.80527 0.84665 0.84424 1.90715 1.37557 1.25970 1.86570 1.46270 1.53137 1.31865 1.05742 1.21053 0.94292 0.97054 0.82735 1.22371 0.95722 1.00723 0.99090 1.20863 0.93038 0.96391 0.87606 1.44082 1.02810 1.76015 1.08620 1.19154 1.15054 1.20884 0.83168 0.91700 1.25056 1.00683 0.96351 0.97556 1.70018 1.32501 1.23691 1.28584 0.86359 0.77638 0.79682 0.83021 1.20869 1.21631 1.21059 1.20730 0.86044 0.94778 0.93608 1.22536 0.97225 1.01983 0.96870 1.19369 1.02659 0.94273 0.97685 1.17089 0.91758 0.89055 0.87661 1.91530 1.71087 1.80303 1.66909 1.21218 1.01445 1.01629 0.94426 1.20826 0.95370 0.93176 0.98657 1.21127 1.03849 0.96073 0.97747 1.17150 0.97178 0.79089 0.95133 1.91510 1.90737 1.33904 1.94738 0.91023 0.91289 0.91025 0.77111 0.90029 0.92346 0.92818 0.96227 0.92575 0.93540 0.96138 0.89036 0.92731 0.92185 0.84001 0.83970 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.88 37.16 0.33 -1.01 16 2 C -0.07 -0.85 2.79 -92.92 -0.26 -1.11 16 3 H 0.11 1.13 7.13 -51.93 -0.37 0.76 16 4 C 0.52 7.79 6.56 -10.99 -0.07 7.71 16 5 O -0.53 -10.04 14.25 5.55 0.08 -9.96 16 6 N -0.72 -10.35 4.97 -53.76 -0.27 -10.62 16 7 C 0.15 2.70 2.42 -67.88 -0.16 2.54 16 8 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 9 C 0.15 3.25 6.52 -3.72 -0.02 3.23 16 10 N -0.59 -14.98 2.99 -172.33 -0.52 -15.49 16 11 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 12 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 13 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 14 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 15 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 C 0.17 4.14 5.30 -3.72 -0.02 4.12 16 20 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 21 C -0.14 -1.63 4.40 -104.49 -0.46 -2.09 16 22 C 0.16 1.97 6.14 -39.43 -0.24 1.73 16 23 F -0.12 -1.66 13.81 2.25 0.03 -1.63 16 24 C -0.17 -1.55 10.03 -39.50 -0.40 -1.94 16 25 C -0.06 -0.45 10.04 -39.60 -0.40 -0.85 16 26 C -0.17 -1.39 10.02 -39.51 -0.40 -1.79 16 27 C 0.13 1.42 7.25 -39.43 -0.29 1.14 16 28 F -0.13 -1.42 16.19 2.25 0.04 -1.38 16 29 H 0.07 0.74 6.29 -51.93 -0.33 0.42 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.56 7.56 -51.93 -0.39 0.16 16 32 H 0.40 4.54 8.02 -40.82 -0.33 4.21 16 33 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 2.40 6.07 -51.93 -0.31 2.08 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 45 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -32.50 368.29 -8.72 -41.22 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.31 Total: 2.36 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.91 Total: -1.07 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.16 Total: -51.70 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.07 Total: -3.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.50 -8.72 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611199663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.324 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds