Wall clock time and date at job start Tue Mar 31 2020 21:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.46863 * 2 1 4 4 C 1.50701 * 109.47139 * 239.99524 * 2 1 3 5 5 O 1.21287 * 120.00036 * 239.99606 * 4 2 1 6 6 N 1.34774 * 119.99872 * 60.00562 * 4 2 1 7 7 C 1.46507 * 119.99847 * 180.02562 * 6 4 2 8 8 C 1.53041 * 109.45666 * 275.06482 * 7 6 4 9 9 C 1.53190 * 109.31249 * 178.61806 * 8 7 6 10 10 N 1.46919 * 108.77563 * 54.62884 * 9 8 7 11 11 C 1.36946 * 120.62791 * 126.41749 * 10 9 8 12 12 H 1.08001 * 119.99718 * 331.82372 * 11 10 9 13 13 C 1.38810 * 120.00117 * 151.82357 * 11 10 9 14 14 N 1.31622 * 119.99791 * 343.08068 * 13 11 10 15 15 Si 1.86800 * 120.00151 * 163.07926 * 13 11 10 16 16 H 1.48499 * 109.47015 * 60.00031 * 15 13 11 17 17 H 1.48501 * 109.47145 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47060 * 299.99871 * 15 13 11 19 19 C 1.46921 * 118.74373 * 306.39445 * 10 9 8 20 20 C 1.53042 * 109.46005 * 154.99640 * 7 6 4 21 21 C 1.50708 * 109.46895 * 119.99831 * 2 1 3 22 22 C 1.38411 * 120.02467 * 59.72344 * 21 2 1 23 23 F 1.35098 * 120.01642 * 0.02562 * 22 21 2 24 24 C 1.38482 * 119.97214 * 179.79081 * 22 21 2 25 25 C 1.38207 * 120.02401 * 0.49052 * 24 22 21 26 26 C 1.38212 * 120.04941 * 359.73658 * 25 24 22 27 27 C 1.38420 * 120.02311 * 239.99998 * 21 2 1 28 28 F 1.35101 * 120.01195 * 359.97438 * 27 21 2 29 29 H 1.09002 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47614 * 300.00336 * 1 2 3 31 31 H 1.08999 * 109.47297 * 60.00916 * 1 2 3 32 32 H 0.96996 * 120.00437 * 359.97438 * 6 4 2 33 33 H 1.08996 * 109.44674 * 35.03059 * 7 6 4 34 34 H 1.09000 * 109.49517 * 298.56341 * 8 7 6 35 35 H 1.08996 * 109.49647 * 58.66163 * 8 7 6 36 36 H 1.08998 * 109.58321 * 294.84560 * 9 8 7 37 37 H 1.08995 * 109.70564 * 174.49135 * 9 8 7 38 38 H 0.96999 * 119.99934 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.58471 * 293.82056 * 19 10 9 40 40 H 1.09004 * 109.70588 * 173.46375 * 19 10 9 41 41 H 1.09005 * 109.49601 * 301.33748 * 20 7 6 42 42 H 1.09001 * 109.49579 * 61.42896 * 20 7 6 43 43 H 1.08002 * 119.98545 * 180.23265 * 24 22 21 44 44 H 1.07998 * 119.97834 * 179.77173 * 25 24 22 45 45 H 1.07997 * 119.98527 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7068 -0.2501 -2.4545 7 6 2.1947 -0.9411 -3.6507 8 6 3.5985 -0.4372 -3.9936 9 6 4.1192 -1.1865 -5.2241 10 7 3.1436 -1.0427 -6.3132 11 6 3.5313 -0.5725 -7.5396 12 1 4.3729 0.0997 -7.6188 13 6 2.8425 -0.9597 -8.6808 14 7 2.0509 -2.0107 -8.6468 15 14 3.0390 0.0107 -10.2648 16 1 4.4640 -0.0068 -10.6825 17 1 2.2034 -0.6027 -11.3281 18 1 2.6055 1.4136 -10.0429 19 6 1.7443 -1.4134 -6.0618 20 6 1.2502 -0.6615 -4.8220 21 6 2.0323 -0.7104 1.2306 22 6 1.6935 -2.0339 1.4530 23 9 0.9127 -2.6897 0.5669 24 6 2.1592 -2.6869 2.5819 25 6 2.9536 -2.0146 3.4914 26 6 3.2887 -0.6917 3.2725 27 6 2.8281 -0.0382 2.1420 28 9 3.1554 1.2551 1.9287 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.1489 0.5384 -2.5436 33 1 2.2302 -2.0139 -3.4609 34 1 3.5594 0.6308 -4.2076 35 1 4.2652 -0.6156 -3.1499 36 1 4.2448 -2.2421 -4.9831 37 1 5.0762 -0.7659 -5.5328 38 1 1.5699 -2.2816 -9.4444 39 1 1.6763 -2.4875 -5.8891 40 1 1.1320 -1.1420 -6.9218 41 1 0.2455 -0.9995 -4.5678 42 1 1.2332 0.4087 -5.0281 43 1 1.8980 -3.7206 2.7538 44 1 3.3134 -2.5235 4.3734 45 1 3.9099 -0.1675 3.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611199663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:30 Heat of formation + Delta-G solvation = -104.631991 kcal Electronic energy + Delta-G solvation = -29802.915634 eV Core-core repulsion = 25455.807061 eV Total energy + Delta-G solvation = -4347.108574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.06229 -49.99964 -41.30101 -39.77993 -38.89654 -36.03708 -35.42906 -33.87108 -31.87055 -31.32926 -31.24040 -30.28964 -27.08740 -25.81233 -24.21791 -23.90943 -23.82052 -22.86034 -21.33227 -20.79041 -19.16952 -18.96778 -18.58653 -17.72554 -17.44523 -16.88109 -16.84604 -16.59024 -16.51774 -16.32387 -16.02212 -15.62360 -15.44421 -15.38143 -15.08291 -14.85676 -14.74950 -14.36511 -14.11285 -13.76800 -13.56997 -13.29638 -13.23634 -13.09169 -13.02469 -12.88419 -12.60613 -12.56491 -12.51192 -12.25382 -12.05856 -11.94758 -11.89525 -11.59354 -11.38608 -10.84897 -10.56940 -10.04524 -9.88652 -9.71075 -8.73307 -7.89467 -5.35785 -0.03698 0.01914 1.47973 1.49840 1.57166 1.59021 2.08103 2.45521 2.50832 2.91741 3.24420 3.26267 3.42818 3.56046 3.63630 3.80447 3.88037 3.92292 4.02553 4.06485 4.22491 4.24905 4.29428 4.42343 4.61000 4.65906 4.72876 4.77579 4.81850 4.84969 4.89233 4.98792 5.00938 5.03856 5.07524 5.11704 5.18035 5.21728 5.25535 5.43717 5.51412 5.62203 5.68214 5.79907 6.36838 6.54492 7.12341 7.22700 7.81389 8.34844 9.17661 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.002477 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.148425 B =11299.049631 C =11506.224868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 H 0.127 0.873 4 C 0.515 3.485 5 O -0.573 6.573 6 N -0.709 5.709 7 C 0.164 3.836 8 C -0.123 4.123 9 C 0.146 3.854 10 N -0.608 5.608 11 C -0.267 4.267 12 H 0.068 0.932 13 C -0.049 4.049 14 N -0.936 5.936 15 Si 0.971 3.029 16 H -0.277 1.277 17 H -0.294 1.294 18 H -0.275 1.275 19 C 0.180 3.820 20 C -0.128 4.128 21 C -0.158 4.158 22 C 0.131 3.869 23 F -0.140 7.140 24 C -0.171 4.171 25 C -0.051 4.051 26 C -0.162 4.162 27 C 0.117 3.883 28 F -0.135 7.135 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.413 0.587 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.005 0.995 37 H 0.058 0.942 38 H 0.251 0.749 39 H -0.008 1.008 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.158 0.842 44 H 0.183 0.817 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 5.709 27.824 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 H 0.144 0.856 4 C 0.302 3.698 5 O -0.452 6.452 6 N -0.360 5.360 7 C 0.059 3.941 8 C -0.163 4.163 9 C 0.019 3.981 10 N -0.332 5.332 11 C -0.397 4.397 12 H 0.085 0.915 13 C -0.245 4.245 14 N -0.582 5.582 15 Si 0.798 3.202 16 H -0.203 1.203 17 H -0.220 1.220 18 H -0.201 1.201 19 C 0.053 3.947 20 C -0.168 4.168 21 C -0.160 4.160 22 C 0.111 3.889 23 F -0.119 7.119 24 C -0.190 4.190 25 C -0.068 4.068 26 C -0.181 4.181 27 C 0.098 3.902 28 F -0.114 7.114 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.250 0.750 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.023 0.977 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.010 0.990 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.176 0.824 44 H 0.200 0.800 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.185 4.969 27.707 28.329 hybrid contribution -0.161 0.369 -1.669 1.717 sum -3.346 5.339 26.038 26.789 Atomic orbital electron populations 1.21871 0.89730 1.03468 1.04906 1.20204 0.99617 1.00699 0.88320 0.85565 1.20861 0.79560 0.84127 0.85286 1.90694 1.39422 1.27898 1.87185 1.45994 1.53199 1.32164 1.04622 1.20631 0.93765 0.95862 0.83830 1.22161 0.96218 1.00579 0.97355 1.20942 0.92882 0.96064 0.88182 1.44338 1.03916 1.76105 1.08848 1.19496 1.15130 1.20774 0.84271 0.91472 1.25844 1.00705 0.97215 1.00694 1.70183 1.33560 1.25224 1.29197 0.85296 0.77563 0.78414 0.78881 1.20273 1.21989 1.20066 1.20549 0.85384 0.93808 0.94924 1.22257 0.98170 1.01778 0.94554 1.19495 1.03689 0.94578 0.98233 1.17500 0.93041 0.89666 0.88646 1.91472 1.71855 1.80707 1.67829 1.21564 1.01134 1.02517 0.93779 1.21300 0.93686 0.92782 0.99065 1.21542 1.02993 0.96431 0.97093 1.17388 0.97700 0.79129 0.96015 1.91492 1.90823 1.34191 1.94878 0.92588 0.89374 0.89454 0.74998 0.92783 0.91378 0.92520 0.97735 0.92362 0.93951 0.98961 0.91730 0.90500 0.90969 0.82436 0.80020 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.88 71.98 0.64 -1.75 16 2 C -0.07 -1.46 2.79 -12.28 -0.03 -1.50 16 3 H 0.13 2.32 7.13 -2.39 -0.02 2.30 16 4 C 0.51 15.23 6.56 87.66 0.58 15.81 16 5 O -0.57 -21.97 14.25 -3.05 -0.04 -22.01 16 6 N -0.71 -19.49 4.97 -442.39 -2.20 -21.69 16 7 C 0.16 5.79 2.42 45.02 0.11 5.89 16 8 C -0.12 -4.57 5.65 30.67 0.17 -4.40 16 9 C 0.15 6.51 6.52 86.36 0.56 7.07 16 10 N -0.61 -31.36 2.99 -699.13 -2.09 -33.45 16 11 C -0.27 -14.84 9.58 84.03 0.81 -14.03 16 12 H 0.07 3.63 7.89 -2.91 -0.02 3.61 16 13 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 14 N -0.94 -55.71 11.19 21.65 0.24 -55.46 16 15 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 C 0.18 8.75 5.30 86.36 0.46 9.20 16 20 C -0.13 -4.66 5.55 30.67 0.17 -4.49 16 21 C -0.16 -3.60 4.40 -19.78 -0.09 -3.69 16 22 C 0.13 3.11 6.14 22.37 0.14 3.25 16 23 F -0.14 -4.00 13.81 44.97 0.62 -3.38 16 24 C -0.17 -2.88 10.03 22.32 0.22 -2.66 16 25 C -0.05 -0.58 10.04 22.26 0.22 -0.36 16 26 C -0.16 -2.19 10.02 22.32 0.22 -1.97 16 27 C 0.12 2.29 7.25 22.37 0.16 2.45 16 28 F -0.14 -2.72 16.19 44.97 0.73 -1.99 16 29 H 0.06 1.14 6.29 -2.39 -0.02 1.12 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.15 7.56 -2.39 -0.02 1.13 16 32 H 0.41 8.50 8.02 -92.71 -0.74 7.75 16 33 H 0.05 2.24 7.58 -2.39 -0.02 2.23 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 38 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.06 3.49 6.07 -2.38 -0.01 3.48 16 41 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 42 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 44 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 45 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -73.13 368.29 4.32 -68.81 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.28 Total: 15.87 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 4.76 Total: 6.49 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -4.05 Total: -110.60 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.04 Total: -22.01 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 1.35 Total: -5.36 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -73.13 4.32 -68.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611199663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.820 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds