Wall clock time and date at job start Tue Mar 31 2020 21:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.50554 * 2 1 4 4 C 1.53093 * 109.50691 * 239.91045 * 2 1 3 5 5 N 1.47009 * 109.26071 * 296.91506 * 4 2 1 6 6 C 1.46894 * 111.00295 * 177.60644 * 5 4 2 7 7 C 1.53002 * 109.47255 * 293.63244 * 6 5 4 8 8 C 1.50702 * 109.47145 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00312 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99857 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00115 * 0.02562 * 10 8 7 12 12 C 1.46497 * 120.00108 * 180.02562 * 10 8 7 13 13 C 1.50702 * 109.47178 * 90.00187 * 12 10 8 14 14 H 1.08002 * 119.99817 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00167 * 180.02562 * 13 12 10 16 16 N 1.31505 * 120.00232 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99893 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46947 * 90.00394 * 17 15 13 19 19 H 1.48497 * 109.47047 * 210.00308 * 17 15 13 20 20 H 1.48502 * 109.47217 * 330.00478 * 17 15 13 21 21 C 1.47016 * 110.75376 * 301.38357 * 5 4 2 22 22 C 1.53103 * 109.29298 * 58.59374 * 21 5 4 23 23 H 1.08998 * 109.50917 * 63.10882 * 22 21 5 24 24 C 1.52994 * 109.50526 * 183.24310 * 22 21 5 25 25 F 1.39903 * 109.47736 * 59.99770 * 24 22 21 26 26 F 1.39897 * 109.47182 * 179.97438 * 24 22 21 27 27 F 1.39899 * 109.47153 * 299.99756 * 24 22 21 28 28 O 1.43015 * 109.50429 * 120.12746 * 2 1 3 29 29 H 1.08998 * 109.46957 * 180.08956 * 1 2 3 30 30 H 1.09004 * 109.46999 * 300.08725 * 1 2 3 31 31 H 1.08997 * 109.47106 * 60.08922 * 1 2 3 32 32 H 1.09001 * 109.50838 * 176.97939 * 4 2 1 33 33 H 1.09005 * 109.53925 * 56.86817 * 4 2 1 34 34 H 1.09000 * 109.47347 * 53.63483 * 6 5 4 35 35 H 1.09006 * 109.47458 * 173.63713 * 6 5 4 36 36 H 1.09000 * 109.47138 * 300.00366 * 7 6 5 37 37 H 1.09006 * 109.46505 * 59.99885 * 7 6 5 38 38 H 1.09001 * 109.47093 * 89.99401 * 11 10 8 39 39 H 1.08993 * 109.47254 * 210.00234 * 11 10 8 40 40 H 1.09006 * 109.46967 * 330.00395 * 11 10 8 41 41 H 1.08999 * 109.47453 * 210.00343 * 12 10 8 42 42 H 1.09006 * 109.47007 * 329.99840 * 12 10 8 43 43 H 0.97006 * 120.00668 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.50934 * 178.55099 * 21 5 4 45 45 H 1.09003 * 109.50733 * 298.63693 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2486 5 7 1.6110 -2.1285 -1.2052 6 6 2.0336 -2.8462 -2.4153 7 6 1.2905 -2.2825 -3.6281 8 6 1.7244 -3.0184 -4.8697 9 8 2.5467 -3.9065 -4.7920 10 7 1.1988 -2.6895 -6.0663 11 6 0.2059 -1.6163 -6.1602 12 6 1.6202 -3.4051 -7.2731 13 6 0.7233 -4.5967 -7.4896 14 1 -0.0801 -4.8007 -6.7971 15 6 0.9288 -5.4269 -8.5709 16 7 0.1465 -6.4670 -8.7595 17 14 2.3188 -5.0744 -9.7682 18 1 3.5503 -5.7700 -9.3156 19 1 1.9433 -5.5616 -11.1198 20 1 2.5676 -3.6113 -9.8209 21 6 2.1185 -2.7916 0.0048 22 6 1.6074 -2.0477 1.2415 23 1 0.5197 -2.1072 1.2784 24 6 2.1978 -2.6846 2.5010 25 9 3.5938 -2.6052 2.4534 26 9 1.7308 -2.0040 3.6305 27 9 1.8092 -4.0267 2.5710 28 8 2.0075 -0.6766 1.1660 29 1 -0.3633 -1.0277 0.0016 30 1 -0.3633 0.5152 0.8892 31 1 -0.3633 0.5124 -0.8908 32 1 3.1299 -0.6769 -1.2762 33 1 1.6337 -0.2454 -2.1394 34 1 3.1071 -2.7203 -2.5561 35 1 1.8029 -3.9062 -2.3083 36 1 0.2170 -2.4084 -3.4873 37 1 1.5211 -1.2225 -3.7351 38 1 0.7129 -0.6658 -6.3262 39 1 -0.4695 -1.8180 -6.9916 40 1 -0.3643 -1.5667 -5.2326 41 1 1.5527 -2.7387 -8.1330 42 1 2.6500 -3.7422 -7.1547 43 1 0.2909 -7.0510 -9.5205 44 1 1.7669 -3.8231 0.0293 45 1 3.2085 -2.7788 -0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611302611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:04 Heat of formation + Delta-G solvation = -219.978675 kcal Electronic energy + Delta-G solvation = -30573.018278 eV Core-core repulsion = 25790.138672 eV Total energy + Delta-G solvation = -4782.879606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.42699 -47.95868 -47.88273 -40.52866 -39.14821 -36.48368 -34.96557 -33.34309 -32.64048 -31.66330 -29.73732 -28.34589 -27.00972 -26.08837 -25.22380 -23.49947 -22.91944 -21.44525 -20.20814 -18.85585 -18.70492 -18.43864 -18.36009 -17.00639 -16.79468 -16.68636 -15.99803 -15.67886 -15.58760 -15.03108 -14.97994 -14.89294 -14.64919 -14.61571 -14.32413 -14.08667 -14.04209 -14.03172 -13.97473 -13.35282 -13.09660 -12.76753 -12.50057 -12.37484 -12.29056 -12.24212 -12.10018 -12.02073 -11.82529 -11.66789 -11.41739 -11.01156 -10.96021 -10.81715 -10.54942 -10.22540 -10.17768 -9.57838 -9.08670 -8.74514 -8.61932 -7.75802 -6.11549 -4.10623 2.08308 2.86936 3.15052 3.26722 3.28487 3.32748 3.34485 3.57431 3.67209 3.93196 4.09214 4.26761 4.36806 4.37165 4.51713 4.63950 4.67441 4.90295 4.98555 5.06212 5.10408 5.20420 5.25006 5.31393 5.35826 5.42219 5.50714 5.58890 5.63593 5.78671 5.88509 5.92160 5.93448 6.12574 6.39944 6.57271 6.60225 6.65966 6.90202 7.28004 7.57678 8.18892 8.43591 8.88068 8.93755 9.48558 11.01836 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002349 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.736166 B =11916.965235 C =12557.234301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.094 3.906 3 H 0.116 0.884 4 C 0.013 3.987 5 N -0.530 5.530 6 C 0.072 3.928 7 C -0.133 4.133 8 C 0.507 3.493 9 O -0.544 6.544 10 N -0.598 5.598 11 C 0.083 3.917 12 C 0.215 3.785 13 C -0.529 4.529 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.022 3.978 22 C 0.049 3.951 23 H 0.115 0.885 24 C 0.466 3.534 25 F -0.175 7.175 26 F -0.175 7.175 27 F -0.173 7.173 28 O -0.363 6.363 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.102 0.898 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.854 15.697 20.771 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.037 3.963 3 H 0.134 0.866 4 C -0.115 4.115 5 N -0.255 5.255 6 C -0.055 4.055 7 C -0.174 4.174 8 C 0.293 3.707 9 O -0.422 6.422 10 N -0.330 5.330 11 C -0.061 4.061 12 C 0.094 3.906 13 C -0.568 4.568 14 H 0.092 0.908 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.107 4.107 22 C -0.011 4.011 23 H 0.132 0.868 24 C 0.412 3.588 25 F -0.156 7.156 26 F -0.157 7.157 27 F -0.154 7.154 28 O -0.282 6.282 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.869 15.140 20.835 25.770 hybrid contribution 1.323 -0.126 -0.807 1.555 sum 2.193 15.014 20.028 25.127 Atomic orbital electron populations 1.22332 0.94795 1.03812 1.02749 1.22450 0.94943 0.95875 0.83076 0.86615 1.22951 0.99346 0.89744 0.99454 1.62148 1.59500 1.01916 1.01907 1.21863 0.97995 0.98829 0.86823 1.21617 1.02693 1.00387 0.92675 1.20277 0.82079 0.83835 0.84503 1.90677 1.34101 1.31419 1.85958 1.47840 1.41233 1.35578 1.08314 1.21671 0.92166 0.89407 1.02835 1.19668 0.96864 0.92459 0.81587 1.21320 1.15692 1.08742 1.11028 0.90770 1.24862 0.96014 0.94626 0.97530 1.69891 1.38542 1.15246 1.29885 0.86844 0.83039 0.79129 0.80624 1.19903 1.21041 1.19096 1.22692 0.99620 0.99307 0.89090 1.23142 1.01432 0.85151 0.91368 0.86782 1.20086 0.76613 0.76661 0.85479 1.93210 1.29905 1.95968 1.96558 1.93209 1.88320 1.79666 1.54457 1.93223 1.90877 1.34684 1.96629 1.88046 1.75625 1.20045 1.44476 0.90826 0.92014 0.90873 0.93265 0.88479 0.93384 0.89188 0.88303 0.89697 0.93723 0.90563 0.91985 0.95255 0.94595 0.92525 0.87938 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 8.89 37.16 0.33 -0.83 16 2 C 0.09 0.68 3.92 -26.68 -0.10 0.58 16 3 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.01 0.11 4.85 -3.72 -0.02 0.09 16 5 N -0.53 -5.17 4.10 -234.31 -0.96 -6.13 16 6 C 0.07 0.89 4.25 -3.83 -0.02 0.88 16 7 C -0.13 -1.71 4.19 -27.88 -0.12 -1.83 16 8 C 0.51 9.69 7.67 -10.98 -0.08 9.60 16 9 O -0.54 -12.81 15.56 5.56 0.09 -12.72 16 10 N -0.60 -11.80 2.86 -182.95 -0.52 -12.32 16 11 C 0.08 1.19 10.24 59.85 0.61 1.80 16 12 C 0.21 5.17 4.23 -5.19 -0.02 5.15 16 13 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 14 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 15 C 0.07 2.09 5.47 -17.83 -0.10 1.99 16 16 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 17 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 21 C 0.02 0.20 4.68 -3.71 -0.02 0.19 16 22 C 0.05 0.43 2.38 -26.68 -0.06 0.37 16 23 H 0.11 0.87 6.49 -51.93 -0.34 0.53 16 24 C 0.47 4.47 2.85 37.15 0.11 4.58 16 25 F -0.17 -1.89 16.69 2.25 0.04 -1.85 16 26 F -0.18 -1.78 17.26 2.25 0.04 -1.74 16 27 F -0.17 -1.65 16.86 2.25 0.04 -1.62 16 28 O -0.36 -3.43 10.18 -35.23 -0.36 -3.79 16 29 H 0.07 0.55 6.12 -51.93 -0.32 0.23 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.69 6.38 -51.93 -0.33 0.35 16 34 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.09 1.25 8.00 -51.93 -0.42 0.84 16 36 H 0.10 1.18 7.40 -51.93 -0.38 0.79 16 37 H 0.08 0.87 6.48 -51.93 -0.34 0.53 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 1.15 8.07 -51.93 -0.42 0.74 16 40 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 41 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 42 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.10 0.92 7.85 -51.93 -0.41 0.52 16 45 H 0.06 0.60 7.72 -51.93 -0.40 0.20 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -33.98 369.34 -6.34 -40.31 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.53 Total: -2.83 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 0.17 Total: 7.16 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.71 Total: -45.21 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.27 Total: -16.51 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.21 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.98 -6.34 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611302611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.664 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds