Wall clock time and date at job start Tue Mar 31 2020 21:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.50554 * 2 1 4 4 C 1.53093 * 109.50691 * 239.91045 * 2 1 3 5 5 N 1.47009 * 109.26071 * 296.91506 * 4 2 1 6 6 C 1.46894 * 111.00295 * 177.60644 * 5 4 2 7 7 C 1.53002 * 109.47255 * 293.63244 * 6 5 4 8 8 C 1.50702 * 109.47145 * 179.97438 * 7 6 5 9 9 O 1.21280 * 120.00312 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99857 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00115 * 0.02562 * 10 8 7 12 12 C 1.46497 * 120.00108 * 180.02562 * 10 8 7 13 13 C 1.50702 * 109.47178 * 90.00187 * 12 10 8 14 14 H 1.08002 * 119.99817 * 359.97438 * 13 12 10 15 15 C 1.37871 * 120.00167 * 180.02562 * 13 12 10 16 16 N 1.31505 * 120.00232 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99893 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46947 * 90.00394 * 17 15 13 19 19 H 1.48497 * 109.47047 * 210.00308 * 17 15 13 20 20 H 1.48502 * 109.47217 * 330.00478 * 17 15 13 21 21 C 1.47016 * 110.75376 * 301.38357 * 5 4 2 22 22 C 1.53103 * 109.29298 * 58.59374 * 21 5 4 23 23 H 1.08998 * 109.50917 * 63.10882 * 22 21 5 24 24 C 1.52994 * 109.50526 * 183.24310 * 22 21 5 25 25 F 1.39903 * 109.47736 * 59.99770 * 24 22 21 26 26 F 1.39897 * 109.47182 * 179.97438 * 24 22 21 27 27 F 1.39899 * 109.47153 * 299.99756 * 24 22 21 28 28 O 1.43015 * 109.50429 * 120.12746 * 2 1 3 29 29 H 1.08998 * 109.46957 * 180.08956 * 1 2 3 30 30 H 1.09004 * 109.46999 * 300.08725 * 1 2 3 31 31 H 1.08997 * 109.47106 * 60.08922 * 1 2 3 32 32 H 1.09001 * 109.50838 * 176.97939 * 4 2 1 33 33 H 1.09005 * 109.53925 * 56.86817 * 4 2 1 34 34 H 1.09000 * 109.47347 * 53.63483 * 6 5 4 35 35 H 1.09006 * 109.47458 * 173.63713 * 6 5 4 36 36 H 1.09000 * 109.47138 * 300.00366 * 7 6 5 37 37 H 1.09006 * 109.46505 * 59.99885 * 7 6 5 38 38 H 1.09001 * 109.47093 * 89.99401 * 11 10 8 39 39 H 1.08993 * 109.47254 * 210.00234 * 11 10 8 40 40 H 1.09006 * 109.46967 * 330.00395 * 11 10 8 41 41 H 1.08999 * 109.47453 * 210.00343 * 12 10 8 42 42 H 1.09006 * 109.47007 * 329.99840 * 12 10 8 43 43 H 0.97006 * 120.00668 * 179.97438 * 16 15 13 44 44 H 1.09002 * 109.50934 * 178.55099 * 21 5 4 45 45 H 1.09003 * 109.50733 * 298.63693 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2486 5 7 1.6110 -2.1285 -1.2052 6 6 2.0336 -2.8462 -2.4153 7 6 1.2905 -2.2825 -3.6281 8 6 1.7244 -3.0184 -4.8697 9 8 2.5467 -3.9065 -4.7920 10 7 1.1988 -2.6895 -6.0663 11 6 0.2059 -1.6163 -6.1602 12 6 1.6202 -3.4051 -7.2731 13 6 0.7233 -4.5967 -7.4896 14 1 -0.0801 -4.8007 -6.7971 15 6 0.9288 -5.4269 -8.5709 16 7 0.1465 -6.4670 -8.7595 17 14 2.3188 -5.0744 -9.7682 18 1 3.5503 -5.7700 -9.3156 19 1 1.9433 -5.5616 -11.1198 20 1 2.5676 -3.6113 -9.8209 21 6 2.1185 -2.7916 0.0048 22 6 1.6074 -2.0477 1.2415 23 1 0.5197 -2.1072 1.2784 24 6 2.1978 -2.6846 2.5010 25 9 3.5938 -2.6052 2.4534 26 9 1.7308 -2.0040 3.6305 27 9 1.8092 -4.0267 2.5710 28 8 2.0075 -0.6766 1.1660 29 1 -0.3633 -1.0277 0.0016 30 1 -0.3633 0.5152 0.8892 31 1 -0.3633 0.5124 -0.8908 32 1 3.1299 -0.6769 -1.2762 33 1 1.6337 -0.2454 -2.1394 34 1 3.1071 -2.7203 -2.5561 35 1 1.8029 -3.9062 -2.3083 36 1 0.2170 -2.4084 -3.4873 37 1 1.5211 -1.2225 -3.7351 38 1 0.7129 -0.6658 -6.3262 39 1 -0.4695 -1.8180 -6.9916 40 1 -0.3643 -1.5667 -5.2326 41 1 1.5527 -2.7387 -8.1330 42 1 2.6500 -3.7422 -7.1547 43 1 0.2909 -7.0510 -9.5205 44 1 1.7669 -3.8231 0.0293 45 1 3.2085 -2.7788 -0.0031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611302611.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:03 Heat of formation + Delta-G solvation = -244.364933 kcal Electronic energy + Delta-G solvation = -30574.075746 eV Core-core repulsion = 25790.138672 eV Total energy + Delta-G solvation = -4783.937074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.21395 -48.73950 -48.69058 -41.29400 -40.56808 -37.36630 -36.57101 -34.71497 -33.97788 -32.75451 -30.81773 -29.83147 -27.67645 -27.36049 -26.33591 -24.45618 -24.15449 -22.71842 -20.89637 -19.94737 -19.56717 -19.47085 -19.15090 -19.12244 -17.96307 -17.45904 -17.13004 -16.87013 -16.73846 -16.21751 -15.95603 -15.67850 -15.59048 -15.47402 -15.38653 -15.12219 -15.03519 -14.84078 -14.82964 -14.62728 -14.41205 -13.97580 -13.76419 -13.63494 -13.59559 -13.31691 -13.04262 -12.94807 -12.85237 -12.70687 -12.50441 -12.43865 -12.35689 -12.01504 -11.82499 -11.74590 -11.52821 -10.90117 -10.83686 -10.66194 -9.55941 -9.37501 -8.34388 -6.39467 1.32394 1.36010 1.36513 1.44813 1.81292 2.08706 2.29231 2.30667 2.55610 2.83914 2.99949 3.01591 3.37411 3.52100 3.71838 3.78093 3.85449 3.88329 4.05670 4.15881 4.25048 4.34397 4.42233 4.47117 4.56238 4.67748 4.70133 4.75079 4.79815 4.90310 4.92780 4.96527 4.98217 5.04933 5.10662 5.42479 5.46107 5.62898 5.70036 5.78358 5.84751 6.23541 6.62247 6.72171 7.21593 7.43616 8.82608 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.002349 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.736166 B =11916.965235 C =12557.234301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 H 0.137 0.863 4 C 0.010 3.990 5 N -0.522 5.522 6 C 0.080 3.920 7 C -0.114 4.114 8 C 0.495 3.505 9 O -0.600 6.600 10 N -0.608 5.608 11 C 0.076 3.924 12 C 0.222 3.778 13 C -0.536 4.536 14 H 0.029 0.971 15 C 0.009 3.991 16 N -0.946 5.946 17 Si 0.948 3.052 18 H -0.278 1.278 19 H -0.275 1.275 20 H -0.236 1.236 21 C 0.020 3.980 22 C 0.057 3.943 23 H 0.129 0.871 24 C 0.466 3.534 25 F -0.184 7.184 26 F -0.178 7.178 27 F -0.174 7.174 28 O -0.378 6.378 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.117 0.883 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.017 0.983 43 H 0.268 0.732 44 H 0.102 0.898 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.804 18.845 20.789 28.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.035 3.965 3 H 0.154 0.846 4 C -0.118 4.118 5 N -0.246 5.246 6 C -0.048 4.048 7 C -0.154 4.154 8 C 0.284 3.716 9 O -0.482 6.482 10 N -0.339 5.339 11 C -0.066 4.066 12 C 0.099 3.901 13 C -0.574 4.574 14 H 0.047 0.953 15 C -0.189 4.189 16 N -0.587 5.587 17 Si 0.771 3.229 18 H -0.203 1.203 19 H -0.201 1.201 20 H -0.159 1.159 21 C -0.109 4.109 22 C -0.002 4.002 23 H 0.147 0.853 24 C 0.411 3.589 25 F -0.166 7.166 26 F -0.159 7.159 27 F -0.155 7.155 28 O -0.297 6.297 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.059 0.941 33 H 0.135 0.865 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.068 0.932 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.783 18.350 20.874 27.805 hybrid contribution 1.277 -1.117 -0.722 1.843 sum 2.060 17.234 20.153 26.597 Atomic orbital electron populations 1.22307 0.93887 1.03399 1.03698 1.22673 0.95657 0.96388 0.81759 0.84561 1.23104 0.99124 0.88612 1.00958 1.62140 1.59119 1.02620 1.00742 1.21653 0.97109 0.98020 0.88047 1.21542 1.03325 1.01404 0.89115 1.21392 0.80988 0.83324 0.85885 1.90646 1.36660 1.34039 1.86854 1.47979 1.42297 1.36336 1.07282 1.22003 0.91453 0.88967 1.04157 1.19328 0.94715 0.91638 0.84417 1.21578 1.15153 1.10662 1.10021 0.95295 1.25869 0.98907 0.94256 0.99819 1.70047 1.40855 1.16697 1.31056 0.85712 0.78673 0.80663 0.77865 1.20348 1.20063 1.15947 1.22702 0.99066 0.99648 0.89477 1.23082 1.01982 0.84959 0.90221 0.85325 1.20235 0.76201 0.76648 0.85795 1.93190 1.30750 1.96010 1.96611 1.93200 1.88297 1.79723 1.54718 1.93220 1.90820 1.34836 1.96658 1.88039 1.76088 1.20060 1.45526 0.91849 0.91676 0.89371 0.94055 0.86494 0.94897 0.91518 0.86512 0.85835 0.90023 0.91890 0.88787 0.93167 0.96496 0.92284 0.87946 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.89 71.98 0.64 -1.04 16 2 C 0.09 1.06 3.92 30.63 0.12 1.18 16 3 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 4 C 0.01 0.13 4.85 86.31 0.42 0.55 16 5 N -0.52 -9.26 4.10 -895.21 -3.67 -12.93 16 6 C 0.08 1.91 4.25 86.31 0.37 2.28 16 7 C -0.11 -2.64 4.19 29.85 0.13 -2.51 16 8 C 0.49 18.58 7.67 87.66 0.67 19.26 16 9 O -0.60 -29.03 15.56 -3.03 -0.05 -29.08 16 10 N -0.61 -23.21 2.86 -851.12 -2.43 -25.64 16 11 C 0.08 1.92 10.24 127.77 1.31 3.23 16 12 C 0.22 10.56 4.23 85.63 0.36 10.92 16 13 C -0.54 -31.24 9.94 25.60 0.25 -30.98 16 14 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 15 C 0.01 0.55 5.47 84.65 0.46 1.01 16 16 N -0.95 -59.77 13.96 21.44 0.30 -59.47 16 17 Si 0.95 44.14 27.47 68.60 1.88 46.02 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 21 C 0.02 0.36 4.68 86.32 0.40 0.76 16 22 C 0.06 0.94 2.38 30.63 0.07 1.01 16 23 H 0.13 1.73 6.49 -2.39 -0.02 1.71 16 24 C 0.47 8.63 2.85 71.98 0.21 8.84 16 25 F -0.18 -3.94 16.69 44.97 0.75 -3.19 16 26 F -0.18 -3.47 17.26 44.97 0.78 -2.69 16 27 F -0.17 -3.26 16.86 44.97 0.76 -2.50 16 28 O -0.38 -6.41 10.18 -148.98 -1.52 -7.92 16 29 H 0.06 0.75 6.12 -2.39 -0.01 0.74 16 30 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 1.11 6.38 -2.38 -0.02 1.10 16 34 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 35 H 0.07 1.91 8.00 -2.38 -0.02 1.89 16 36 H 0.12 2.37 7.40 -2.39 -0.02 2.35 16 37 H 0.12 1.94 6.48 -2.38 -0.02 1.93 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.77 8.07 -2.39 -0.02 1.75 16 40 H 0.09 1.76 6.44 -2.38 -0.02 1.74 16 41 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 42 H 0.02 0.87 6.85 -2.38 -0.02 0.86 16 43 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 44 H 0.10 1.84 7.85 -2.39 -0.02 1.82 16 45 H 0.05 0.99 7.72 -2.39 -0.02 0.97 16 Total: -1.00 -78.13 369.34 3.17 -74.96 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.95 Total: 7.92 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 5.41 Total: 14.51 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -5.80 Total: -98.03 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.56 Total: -37.00 kcal Atomic # 9 Polarization: -10.66 SS G_CDS: 2.29 Total: -8.37 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -78.13 3.17 -74.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611302611.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.409 kcal (2) G-P(sol) polarization free energy of solvation -78.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds