Wall clock time and date at job start Tue Mar 31 2020 21:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.50993 * 2 1 4 4 C 1.53102 * 109.50482 * 120.08976 * 2 1 3 5 5 N 1.47006 * 109.26050 * 63.08826 * 4 2 1 6 6 C 1.46901 * 111.00203 * 182.39381 * 5 4 2 7 7 N 1.46498 * 109.47308 * 66.04136 * 6 5 4 8 8 N 1.40170 * 126.14538 * 89.97273 * 7 6 5 9 9 C 1.32234 * 107.76033 * 180.02562 * 8 7 6 10 10 C 1.40112 * 125.92718 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00169 * 174.01627 * 10 9 8 12 12 C 1.40044 * 119.99998 * 354.01254 * 10 9 8 13 13 N 1.30793 * 119.99988 * 6.01125 * 12 10 9 14 14 Si 1.86806 * 120.00022 * 186.00907 * 12 10 9 15 15 H 1.48502 * 109.46822 * 94.98099 * 14 12 10 16 16 H 1.48495 * 109.46912 * 214.98237 * 14 12 10 17 17 H 1.48504 * 109.47025 * 334.98314 * 14 12 10 18 18 N 1.38503 * 108.14917 * 0.02562 * 9 8 7 19 19 C 1.46490 * 125.83775 * 179.73724 * 18 9 8 20 20 C 1.34731 * 108.32493 * 0.02562 * 18 9 8 21 21 S 1.71201 * 125.97155 * 180.02562 * 20 18 9 22 22 C 1.47014 * 110.75572 * 58.61420 * 5 4 2 23 23 C 1.53101 * 109.25909 * 301.38541 * 22 5 4 24 24 H 1.09001 * 109.50462 * 296.91540 * 23 22 5 25 25 C 1.52993 * 109.54455 * 176.80382 * 23 22 5 26 26 C 1.53002 * 117.49870 * 248.94790 * 25 23 22 27 27 C 1.52993 * 117.50115 * 180.28309 * 25 23 22 28 28 O 1.43013 * 109.50921 * 239.86790 * 2 1 3 29 29 H 1.08996 * 109.47485 * 299.91240 * 1 2 3 30 30 H 1.08997 * 109.46975 * 59.91582 * 1 2 3 31 31 H 1.09005 * 109.47257 * 179.90936 * 1 2 3 32 32 H 1.09001 * 109.50563 * 303.14718 * 4 2 1 33 33 H 1.09003 * 109.50662 * 183.01965 * 4 2 1 34 34 H 1.08992 * 109.46892 * 306.04575 * 6 5 4 35 35 H 1.09000 * 109.47495 * 186.04182 * 6 5 4 36 36 H 0.96999 * 120.00306 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47937 * 89.99884 * 19 18 9 38 38 H 1.09006 * 109.47273 * 210.00061 * 19 18 9 39 39 H 1.09007 * 109.47358 * 329.99445 * 19 18 9 40 40 H 1.08999 * 109.50693 * 61.32143 * 22 5 4 41 41 H 1.08996 * 109.51107 * 181.45160 * 22 5 4 42 42 H 1.09001 * 115.55013 * 34.61255 * 25 23 22 43 43 H 1.08997 * 117.49793 * 359.97438 * 26 25 23 44 44 H 1.08995 * 117.50149 * 145.01893 * 26 25 23 45 45 H 1.09000 * 117.50416 * 214.97319 * 27 25 23 46 46 H 1.09002 * 117.49599 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2487 5 7 1.6110 -2.1286 1.2052 6 6 2.0335 -2.8462 2.4154 7 7 1.3277 -2.3014 3.5777 8 7 0.0959 -2.7440 4.0793 9 6 -0.2018 -2.0006 5.1315 10 6 -1.3518 -2.1192 5.9231 11 1 -1.4541 -1.5254 6.8193 12 6 -2.3687 -3.0079 5.5521 13 7 -2.1959 -3.8113 4.5346 14 14 -3.9717 -3.0457 6.5105 15 1 -4.9710 -2.1773 5.8379 16 1 -4.4831 -4.4388 6.5648 17 1 -3.7351 -2.5510 7.8906 18 7 0.8203 -1.0842 5.3154 19 6 0.8820 -0.0681 6.3689 20 6 1.7451 -1.2829 4.3560 21 16 3.1978 -0.3983 4.1609 22 6 2.1185 -2.7916 -0.0048 23 6 1.6065 -2.0474 -1.2409 24 1 0.5188 -2.1070 -1.2769 25 6 2.1951 -2.6837 -2.5016 26 6 3.2169 -1.8663 -3.2945 27 6 1.8052 -2.0731 -3.8492 28 8 2.0076 -0.6767 -1.1659 29 1 -0.3634 0.5124 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0016 32 1 1.6331 -0.2453 2.1391 33 1 3.1298 -0.6770 1.2763 34 1 3.1079 -2.7250 2.5531 35 1 1.7978 -3.9053 2.3108 36 1 -2.9003 -4.4266 4.2774 37 1 1.3836 -0.4816 7.2438 38 1 1.4372 0.7973 6.0069 39 1 -0.1290 0.2363 6.6398 40 1 3.2084 -2.7781 0.0028 41 1 1.7669 -3.8230 -0.0294 42 1 2.3372 -3.7637 -2.4608 43 1 3.4695 -0.8750 -2.9181 44 1 4.0310 -2.4084 -3.7755 45 1 1.6913 -2.7511 -4.6950 46 1 1.1297 -1.2177 -3.8374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794661330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:01 Heat of formation + Delta-G solvation = 72.034634 kcal Electronic energy + Delta-G solvation = -28462.526113 eV Core-core repulsion = 24709.211516 eV Total energy + Delta-G solvation = -3753.314596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98291 -39.91621 -37.04009 -35.83092 -34.13140 -33.69792 -31.80054 -30.84148 -29.12803 -27.66199 -26.62482 -25.89749 -24.15251 -23.12691 -22.37956 -21.67573 -20.95740 -20.57896 -19.05629 -17.82399 -17.02231 -16.54318 -16.16895 -15.78707 -15.53924 -15.18621 -15.05774 -14.84621 -14.61761 -14.35997 -13.92796 -13.84283 -13.57543 -13.09372 -12.49484 -12.35985 -12.24956 -11.98133 -11.84134 -11.74720 -11.62647 -11.47951 -11.42306 -11.16716 -11.14526 -10.95838 -10.68617 -10.58636 -10.55129 -10.29306 -10.08356 -9.97775 -9.58525 -9.41386 -9.19684 -8.90901 -8.14382 -7.08135 -6.84727 -6.69838 -5.17418 2.23725 2.49275 2.76021 2.89114 2.93222 3.27469 3.49699 3.62225 3.66402 3.87078 3.99306 4.18765 4.65966 4.80413 4.87078 4.95632 5.11177 5.15704 5.23179 5.31425 5.34984 5.45291 5.52923 5.53010 5.57219 5.63245 5.63978 5.80595 5.87175 5.90741 6.02738 6.04557 6.07720 6.10768 6.21232 6.24518 6.31379 6.39700 6.49237 6.55890 6.77088 6.95253 7.06819 7.14674 7.38780 7.53422 7.73742 8.19423 8.31861 9.10244 9.90046 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.003743 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.246712 B = 7479.056921 C = 8705.382671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.092 3.908 3 H 0.102 0.898 4 C 0.030 3.970 5 N -0.544 5.544 6 C 0.326 3.674 7 N -0.369 5.369 8 N -0.329 5.329 9 C 0.372 3.628 10 C -0.439 4.439 11 H 0.097 0.903 12 C 0.077 3.923 13 N -0.734 5.734 14 Si 0.928 3.072 15 H -0.266 1.266 16 H -0.273 1.273 17 H -0.259 1.259 18 N -0.513 5.513 19 C 0.099 3.901 20 C 0.463 3.537 21 S -0.714 6.714 22 C 0.036 3.964 23 C 0.125 3.875 24 H 0.072 0.928 25 C -0.153 4.153 26 C -0.165 4.165 27 C -0.174 4.174 28 O -0.376 6.376 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.286 0.714 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 0.703 -8.417 8.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.120 0.880 4 C -0.098 4.098 5 N -0.270 5.270 6 C 0.114 3.886 7 N -0.154 5.154 8 N -0.161 5.161 9 C 0.123 3.877 10 C -0.480 4.480 11 H 0.115 0.885 12 C -0.150 4.150 13 N -0.358 5.358 14 Si 0.751 3.249 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.183 1.183 18 N -0.214 5.214 19 C -0.044 4.044 20 C 0.093 3.907 21 S -0.590 6.590 22 C -0.093 4.093 23 C 0.066 3.934 24 H 0.090 0.910 25 C -0.171 4.171 26 C -0.202 4.202 27 C -0.211 4.211 28 O -0.296 6.296 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.026 0.274 -9.479 9.538 hybrid contribution -0.611 -0.068 1.339 1.473 sum 0.415 0.206 -8.140 8.153 Atomic orbital electron populations 1.22242 0.95798 1.03412 1.01444 1.22305 0.94105 0.95832 0.84312 0.88019 1.23045 0.99599 0.88098 0.99043 1.62091 1.60565 1.02936 1.01456 1.21682 0.93318 0.95744 0.77855 1.49147 1.18394 1.25232 1.22668 1.79445 0.96124 1.24452 1.16054 1.21340 0.88739 0.84691 0.92949 1.18355 0.97934 1.22975 1.08776 0.88465 1.25832 1.00414 0.93610 0.95143 1.69879 1.33049 1.12935 1.19961 0.85963 0.79916 0.78758 0.80295 1.19128 1.19764 1.18269 1.46000 1.18255 1.31074 1.26083 1.21768 1.03485 0.90566 0.88557 1.22943 0.92505 0.89318 0.85898 1.92785 1.15526 1.61218 1.89450 1.22598 0.98404 0.98754 0.89561 1.21449 0.98355 0.81826 0.91722 0.90979 1.22257 1.05182 0.98552 0.91148 1.22861 0.92165 1.02408 1.02743 1.22918 0.99090 1.03180 0.95900 1.87956 1.75564 1.22681 1.43349 0.91989 0.92940 0.91011 0.88818 0.92575 0.90689 0.87828 0.90327 0.91507 0.89184 0.89689 0.93601 0.89707 0.86780 0.87619 0.89354 0.89096 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 8.89 37.16 0.33 -2.32 16 2 C 0.09 1.44 3.92 -26.68 -0.10 1.33 16 3 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.03 0.54 3.81 -3.71 -0.01 0.53 16 5 N -0.54 -9.48 4.24 -238.22 -1.01 -10.49 16 6 C 0.33 6.19 5.98 -63.32 -0.38 5.81 16 7 N -0.37 -8.36 3.58 -65.05 -0.23 -8.59 16 8 N -0.33 -8.28 10.80 31.21 0.34 -7.94 16 9 C 0.37 9.00 7.49 -155.28 -1.16 7.84 16 10 C -0.44 -10.08 8.94 -38.20 -0.34 -10.42 16 11 H 0.10 2.01 7.22 -52.49 -0.38 1.63 16 12 C 0.08 1.71 5.49 -17.32 -0.10 1.62 16 13 N -0.73 -17.54 11.93 55.55 0.66 -16.88 16 14 Si 0.93 16.41 29.57 -169.99 -5.03 11.38 16 15 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 16 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 17 H -0.26 -4.44 7.11 56.52 0.40 -4.04 16 18 N -0.51 -11.39 3.17 -124.66 -0.39 -11.79 16 19 C 0.10 1.74 10.63 59.84 0.64 2.37 16 20 C 0.46 10.67 6.60 -86.94 -0.57 10.09 16 21 S -0.71 -16.74 27.14 -107.50 -2.92 -19.66 16 22 C 0.04 0.50 4.92 -3.71 -0.02 0.49 16 23 C 0.12 1.67 2.76 -26.68 -0.07 1.60 16 24 H 0.07 1.03 6.49 -51.93 -0.34 0.70 16 25 C -0.15 -1.69 5.71 -90.63 -0.52 -2.21 16 26 C -0.16 -1.76 9.88 -26.69 -0.26 -2.03 16 27 C -0.17 -1.77 10.19 -26.69 -0.27 -2.04 16 28 O -0.38 -5.58 8.64 -35.23 -0.30 -5.88 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.21 6.12 -51.93 -0.32 0.89 16 32 H 0.09 1.99 5.47 -51.93 -0.28 1.71 16 33 H 0.06 1.08 7.96 -51.93 -0.41 0.67 16 34 H 0.08 1.43 7.62 -51.93 -0.40 1.03 16 35 H 0.10 1.85 8.04 -51.93 -0.42 1.43 16 36 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.55 7.61 -51.93 -0.40 1.16 16 39 H 0.08 1.31 7.40 -51.93 -0.38 0.92 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 42 H 0.11 1.10 8.12 -51.93 -0.42 0.68 16 43 H 0.11 1.29 7.07 -51.93 -0.37 0.92 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -28.71 376.21 -13.11 -41.82 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.05 Total: 9.69 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: -2.85 Total: 12.67 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.64 Total: -55.69 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.30 Total: -5.88 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.03 Total: 11.38 kcal Atomic # 16 Polarization: -16.74 SS G_CDS: -2.92 Total: -19.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.71 -13.11 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794661330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.856 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds