Wall clock time and date at job start Tue Mar 31 2020 21:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.50993 * 2 1 4 4 C 1.53102 * 109.50482 * 120.08976 * 2 1 3 5 5 N 1.47006 * 109.26050 * 63.08826 * 4 2 1 6 6 C 1.46901 * 111.00203 * 182.39381 * 5 4 2 7 7 N 1.46498 * 109.47308 * 66.04136 * 6 5 4 8 8 N 1.40170 * 126.14538 * 89.97273 * 7 6 5 9 9 C 1.32234 * 107.76033 * 180.02562 * 8 7 6 10 10 C 1.40112 * 125.92718 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00169 * 174.01627 * 10 9 8 12 12 C 1.40044 * 119.99998 * 354.01254 * 10 9 8 13 13 N 1.30793 * 119.99988 * 6.01125 * 12 10 9 14 14 Si 1.86806 * 120.00022 * 186.00907 * 12 10 9 15 15 H 1.48502 * 109.46822 * 94.98099 * 14 12 10 16 16 H 1.48495 * 109.46912 * 214.98237 * 14 12 10 17 17 H 1.48504 * 109.47025 * 334.98314 * 14 12 10 18 18 N 1.38503 * 108.14917 * 0.02562 * 9 8 7 19 19 C 1.46490 * 125.83775 * 179.73724 * 18 9 8 20 20 C 1.34731 * 108.32493 * 0.02562 * 18 9 8 21 21 S 1.71201 * 125.97155 * 180.02562 * 20 18 9 22 22 C 1.47014 * 110.75572 * 58.61420 * 5 4 2 23 23 C 1.53101 * 109.25909 * 301.38541 * 22 5 4 24 24 H 1.09001 * 109.50462 * 296.91540 * 23 22 5 25 25 C 1.52993 * 109.54455 * 176.80382 * 23 22 5 26 26 C 1.53002 * 117.49870 * 248.94790 * 25 23 22 27 27 C 1.52993 * 117.50115 * 180.28309 * 25 23 22 28 28 O 1.43013 * 109.50921 * 239.86790 * 2 1 3 29 29 H 1.08996 * 109.47485 * 299.91240 * 1 2 3 30 30 H 1.08997 * 109.46975 * 59.91582 * 1 2 3 31 31 H 1.09005 * 109.47257 * 179.90936 * 1 2 3 32 32 H 1.09001 * 109.50563 * 303.14718 * 4 2 1 33 33 H 1.09003 * 109.50662 * 183.01965 * 4 2 1 34 34 H 1.08992 * 109.46892 * 306.04575 * 6 5 4 35 35 H 1.09000 * 109.47495 * 186.04182 * 6 5 4 36 36 H 0.96999 * 120.00306 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47937 * 89.99884 * 19 18 9 38 38 H 1.09006 * 109.47273 * 210.00061 * 19 18 9 39 39 H 1.09007 * 109.47358 * 329.99445 * 19 18 9 40 40 H 1.08999 * 109.50693 * 61.32143 * 22 5 4 41 41 H 1.08996 * 109.51107 * 181.45160 * 22 5 4 42 42 H 1.09001 * 115.55013 * 34.61255 * 25 23 22 43 43 H 1.08997 * 117.49793 * 359.97438 * 26 25 23 44 44 H 1.08995 * 117.50149 * 145.01893 * 26 25 23 45 45 H 1.09000 * 117.50416 * 214.97319 * 27 25 23 46 46 H 1.09002 * 117.49599 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2487 5 7 1.6110 -2.1286 1.2052 6 6 2.0335 -2.8462 2.4154 7 7 1.3277 -2.3014 3.5777 8 7 0.0959 -2.7440 4.0793 9 6 -0.2018 -2.0006 5.1315 10 6 -1.3518 -2.1192 5.9231 11 1 -1.4541 -1.5254 6.8193 12 6 -2.3687 -3.0079 5.5521 13 7 -2.1959 -3.8113 4.5346 14 14 -3.9717 -3.0457 6.5105 15 1 -4.9710 -2.1773 5.8379 16 1 -4.4831 -4.4388 6.5648 17 1 -3.7351 -2.5510 7.8906 18 7 0.8203 -1.0842 5.3154 19 6 0.8820 -0.0681 6.3689 20 6 1.7451 -1.2829 4.3560 21 16 3.1978 -0.3983 4.1609 22 6 2.1185 -2.7916 -0.0048 23 6 1.6065 -2.0474 -1.2409 24 1 0.5188 -2.1070 -1.2769 25 6 2.1951 -2.6837 -2.5016 26 6 3.2169 -1.8663 -3.2945 27 6 1.8052 -2.0731 -3.8492 28 8 2.0076 -0.6767 -1.1659 29 1 -0.3634 0.5124 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0016 32 1 1.6331 -0.2453 2.1391 33 1 3.1298 -0.6770 1.2763 34 1 3.1079 -2.7250 2.5531 35 1 1.7978 -3.9053 2.3108 36 1 -2.9003 -4.4266 4.2774 37 1 1.3836 -0.4816 7.2438 38 1 1.4372 0.7973 6.0069 39 1 -0.1290 0.2363 6.6398 40 1 3.2084 -2.7781 0.0028 41 1 1.7669 -3.8230 -0.0294 42 1 2.3372 -3.7637 -2.4608 43 1 3.4695 -0.8750 -2.9181 44 1 4.0310 -2.4084 -3.7755 45 1 1.6913 -2.7511 -4.6950 46 1 1.1297 -1.2177 -3.8374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794661330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:01 Heat of formation + Delta-G solvation = 57.556131 kcal Electronic energy + Delta-G solvation = -28463.153948 eV Core-core repulsion = 24709.211516 eV Total energy + Delta-G solvation = -3753.942431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.70347 -41.16176 -38.14240 -37.12621 -35.81288 -35.28048 -33.02892 -32.53189 -30.51893 -29.11866 -28.32859 -27.34860 -25.50942 -24.47410 -23.28084 -23.18897 -22.67878 -21.72331 -20.28097 -19.51182 -18.53606 -17.98679 -17.50177 -17.43750 -16.90587 -16.63928 -16.53061 -16.15565 -15.94817 -15.64360 -15.29944 -15.17265 -15.00368 -14.33982 -13.88415 -13.76633 -13.72428 -13.45586 -13.27845 -13.06491 -13.01977 -12.79776 -12.72420 -12.48600 -12.40831 -12.22903 -12.15777 -11.98039 -11.74408 -11.66721 -11.38960 -11.24632 -11.11221 -10.83838 -10.67071 -10.49228 -9.57321 -8.80878 -8.65759 -8.52415 -6.97327 0.48329 0.75359 1.28030 1.44778 1.60123 1.60812 1.85525 2.11634 2.37397 2.60104 2.70092 2.98616 3.08398 3.51121 3.70106 3.76727 3.89456 3.99759 4.03666 4.08550 4.10720 4.21518 4.25479 4.30820 4.37350 4.43465 4.48490 4.53097 4.61655 4.69042 4.77757 4.83988 4.86637 4.88892 4.92195 4.97432 5.08115 5.09148 5.22012 5.25313 5.30479 5.40731 5.61241 5.70696 5.88910 6.07448 6.18431 6.47056 6.56790 7.31671 8.24466 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.003743 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.246712 B = 7479.056921 C = 8705.382671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 H 0.112 0.888 4 C 0.045 3.955 5 N -0.549 5.549 6 C 0.323 3.677 7 N -0.368 5.368 8 N -0.362 5.362 9 C 0.352 3.648 10 C -0.453 4.453 11 H 0.118 0.882 12 C 0.037 3.963 13 N -0.773 5.773 14 Si 1.004 2.996 15 H -0.265 1.265 16 H -0.271 1.271 17 H -0.246 1.246 18 N -0.516 5.516 19 C 0.094 3.906 20 C 0.455 3.545 21 S -0.735 6.735 22 C 0.036 3.964 23 C 0.125 3.875 24 H 0.064 0.936 25 C -0.159 4.159 26 C -0.166 4.166 27 C -0.165 4.165 28 O -0.376 6.376 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.292 0.708 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 0.360 -8.776 8.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.129 0.871 4 C -0.083 4.083 5 N -0.276 5.276 6 C 0.112 3.888 7 N -0.154 5.154 8 N -0.194 5.194 9 C 0.104 3.896 10 C -0.494 4.494 11 H 0.136 0.864 12 C -0.187 4.187 13 N -0.397 5.397 14 Si 0.823 3.177 15 H -0.190 1.190 16 H -0.196 1.196 17 H -0.168 1.168 18 N -0.216 5.216 19 C -0.047 4.047 20 C 0.084 3.916 21 S -0.611 6.611 22 C -0.092 4.092 23 C 0.067 3.933 24 H 0.082 0.918 25 C -0.177 4.177 26 C -0.203 4.203 27 C -0.202 4.202 28 O -0.296 6.296 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.131 0.869 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.120 0.880 42 H 0.151 0.849 43 H 0.106 0.894 44 H 0.124 0.876 45 H 0.131 0.869 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.052 -0.057 -9.847 9.847 hybrid contribution -0.261 0.013 1.427 1.450 sum -0.313 -0.043 -8.420 8.426 Atomic orbital electron populations 1.22122 0.95557 1.02405 1.01683 1.22232 0.94137 0.96099 0.83597 0.87064 1.22771 0.98169 0.88567 0.98829 1.62100 1.60786 1.02790 1.01932 1.21837 0.92816 0.96323 0.77856 1.49419 1.17831 1.24923 1.23187 1.79348 0.97230 1.25704 1.17153 1.21709 0.89502 0.85191 0.93227 1.18905 0.97770 1.23409 1.09320 0.86410 1.26864 1.03581 0.92530 0.95702 1.69973 1.34528 1.13702 1.21527 0.84829 0.74952 0.78690 0.79198 1.18956 1.19555 1.16850 1.46276 1.17443 1.31371 1.26519 1.22042 1.05118 0.89654 0.87901 1.22947 0.92606 0.89586 0.86499 1.92698 1.16432 1.61987 1.90014 1.22741 0.98594 0.99518 0.88313 1.21541 0.98069 0.81103 0.92585 0.91837 1.22294 1.05731 0.99394 0.90298 1.22873 0.93039 1.01630 1.02769 1.22980 0.98314 1.03022 0.95871 1.87975 1.75526 1.23533 1.42527 0.93437 0.90873 0.92580 0.92201 0.94298 0.91027 0.86875 0.89755 0.90034 0.89223 0.87498 0.93294 0.88008 0.84874 0.89423 0.87550 0.86947 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 8.89 71.98 0.64 -4.32 16 2 C 0.10 3.05 3.92 30.63 0.12 3.17 16 3 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 4 C 0.05 1.67 3.81 86.32 0.33 2.00 16 5 N -0.55 -19.51 4.24 -907.58 -3.85 -23.36 16 6 C 0.32 12.57 5.98 170.81 1.02 13.60 16 7 N -0.37 -17.10 3.58 -359.73 -1.29 -18.39 16 8 N -0.36 -18.56 10.80 -55.17 -0.60 -19.16 16 9 C 0.35 17.18 7.49 133.52 1.00 18.18 16 10 C -0.45 -20.47 8.94 23.16 0.21 -20.26 16 11 H 0.12 4.65 7.22 -2.91 -0.02 4.63 16 12 C 0.04 1.60 5.49 85.29 0.47 2.07 16 13 N -0.77 -36.99 11.93 21.84 0.26 -36.73 16 14 Si 1.00 32.30 29.57 68.60 2.03 34.33 16 15 H -0.26 -8.41 7.11 99.48 0.71 -7.71 16 16 H -0.27 -8.56 7.11 99.48 0.71 -7.85 16 17 H -0.25 -7.31 7.11 99.48 0.71 -6.61 16 18 N -0.52 -23.05 3.17 -548.32 -1.74 -24.79 16 19 C 0.09 3.23 10.63 127.77 1.36 4.59 16 20 C 0.45 21.41 6.60 179.06 1.18 22.59 16 21 S -0.74 -35.19 27.14 -56.49 -1.53 -36.72 16 22 C 0.04 1.00 4.92 86.32 0.42 1.43 16 23 C 0.12 3.25 2.76 30.63 0.08 3.33 16 24 H 0.06 1.78 6.49 -2.39 -0.02 1.77 16 25 C -0.16 -3.20 5.71 -10.80 -0.06 -3.27 16 26 C -0.17 -3.24 9.88 30.62 0.30 -2.94 16 27 C -0.16 -2.98 10.19 30.62 0.31 -2.67 16 28 O -0.38 -10.96 8.64 -148.98 -1.29 -12.25 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.91 6.12 -2.38 -0.01 1.89 16 32 H 0.06 2.65 5.47 -2.39 -0.01 2.63 16 33 H 0.04 1.55 7.96 -2.39 -0.02 1.53 16 34 H 0.07 2.82 7.62 -2.39 -0.02 2.80 16 35 H 0.11 4.11 8.04 -2.39 -0.02 4.09 16 36 H 0.29 12.63 8.30 -92.71 -0.77 11.86 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.09 3.07 7.61 -2.38 -0.02 3.06 16 39 H 0.11 3.14 7.40 -2.38 -0.02 3.13 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 2.48 8.09 -2.39 -0.02 2.46 16 42 H 0.13 2.20 8.12 -2.39 -0.02 2.18 16 43 H 0.09 2.05 7.07 -2.39 -0.02 2.04 16 44 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -62.57 376.21 0.37 -62.19 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 0.98 Total: 37.38 kcal Atomic # 6 Polarization: 30.11 SS G_CDS: 7.39 Total: 37.50 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -7.20 Total: -122.42 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.29 Total: -12.25 kcal Atomic # 14 Polarization: 32.30 SS G_CDS: 2.03 Total: 34.33 kcal Atomic # 16 Polarization: -35.19 SS G_CDS: -1.53 Total: -36.72 kcal Total: -62.57 0.37 -62.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794661330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.749 kcal (2) G-P(sol) polarization free energy of solvation -62.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds