Wall clock time and date at job start Tue Mar 31 2020 20:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.33850 * 2 1 4 4 C 1.54291 * 109.40876 * 119.79987 * 2 1 3 5 5 N 1.48182 * 110.69522 * 80.73723 * 4 2 1 6 6 C 1.34770 * 118.51308 * 138.79756 * 5 4 2 7 7 O 1.21591 * 120.00044 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00288 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99994 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47050 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47421 * 180.02562 * 10 9 8 12 12 C 1.50692 * 109.47017 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00610 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99678 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99840 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00128 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47420 * 89.99747 * 16 14 12 18 18 H 1.48501 * 109.47050 * 209.99890 * 16 14 12 19 19 H 1.48496 * 109.46965 * 329.99470 * 16 14 12 20 20 C 1.44463 * 122.97432 * 318.77247 * 5 4 2 21 21 C 1.54872 * 109.32723 * 88.93398 * 20 5 4 22 22 C 1.47687 * 109.67949 * 290.10152 * 21 20 5 23 23 H 1.08998 * 108.64506 * 299.72674 * 22 21 20 24 24 C 1.52996 * 108.64502 * 181.88580 * 22 21 20 25 25 F 1.39897 * 109.47281 * 295.88020 * 24 22 21 26 26 F 1.39899 * 109.47195 * 55.88262 * 24 22 21 27 27 F 1.39894 * 109.47141 * 175.87855 * 24 22 21 28 28 O 1.40526 * 109.40291 * 240.20236 * 2 1 3 29 29 H 1.09003 * 109.47122 * 180.11139 * 1 2 3 30 30 H 1.09003 * 109.47075 * 300.10867 * 1 2 3 31 31 H 1.08995 * 109.47418 * 60.10786 * 1 2 3 32 32 H 1.09005 * 109.23080 * 320.42158 * 4 2 1 33 33 H 1.09000 * 109.22978 * 201.04882 * 4 2 1 34 34 H 0.97000 * 119.99412 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47100 * 299.99931 * 9 8 6 36 36 H 1.09001 * 109.47557 * 60.00153 * 9 8 6 37 37 H 1.09003 * 109.46772 * 299.99714 * 10 9 8 38 38 H 1.09001 * 109.47156 * 59.99490 * 10 9 8 39 39 H 1.08995 * 109.46792 * 299.99940 * 11 10 9 40 40 H 1.09002 * 109.46661 * 59.99558 * 11 10 9 41 41 H 0.97004 * 119.99887 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.49222 * 328.97681 * 20 5 4 43 43 H 1.08997 * 109.51385 * 208.90472 * 20 5 4 44 44 H 1.08997 * 109.43274 * 170.03681 * 21 20 5 45 45 H 1.09004 * 109.43398 * 50.16530 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8909 1.0285 0.0000 4 6 2.0427 -0.7232 1.2628 5 7 2.0062 -2.1927 1.0758 6 6 3.0414 -2.9252 1.5322 7 8 3.9774 -2.3780 2.0827 8 7 3.0391 -4.2642 1.3786 9 6 4.1646 -5.0603 1.8743 10 6 3.9140 -6.5396 1.5746 11 6 5.0892 -7.3712 2.0928 12 6 4.8420 -8.8282 1.7981 13 1 3.9372 -9.1310 1.2923 14 6 5.7712 -9.7748 2.1744 15 7 5.5553 -11.0465 1.9177 16 14 7.3360 -9.2513 3.0500 17 1 7.1068 -9.2536 4.5172 18 1 8.4297 -10.1995 2.7184 19 1 7.7156 -7.8846 2.6104 20 6 0.9112 -2.8759 0.4269 21 6 1.1820 -2.9471 -1.0963 22 6 1.0672 -1.5977 -1.6855 23 1 0.0573 -1.2262 -1.5114 24 6 1.2921 -1.7024 -3.1952 25 9 2.5998 -2.1332 -3.4431 26 9 0.3875 -2.6208 -3.7388 27 9 1.0945 -0.4489 -3.7841 28 8 1.9968 -0.6587 -1.1502 29 1 -0.3633 -1.0277 0.0020 30 1 -0.3633 0.5155 0.8890 31 1 -0.3634 0.5121 -0.8909 32 1 1.4138 -0.4535 2.1113 33 1 3.0679 -0.4121 1.4634 34 1 2.2926 -4.7006 0.9392 35 1 5.0817 -4.7400 1.3799 36 1 4.2636 -4.9189 2.9505 37 1 2.9968 -6.8601 2.0687 38 1 3.8153 -6.6806 0.4983 39 1 6.0066 -7.0507 1.5991 40 1 5.1874 -7.2300 3.1692 41 1 6.2089 -11.7126 2.1828 42 1 -0.0153 -2.3305 0.6066 43 1 0.8228 -3.8854 0.8283 44 1 0.4538 -3.6100 -1.5635 45 1 2.1865 -3.3337 -1.2683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875236143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:46 Heat of formation + Delta-G solvation = -206.531362 kcal Electronic energy + Delta-G solvation = -31074.159675 eV Core-core repulsion = 26291.863188 eV Total energy + Delta-G solvation = -4782.296487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.44044 -47.97684 -47.84918 -41.33800 -39.46634 -35.86502 -35.61506 -34.26321 -33.23168 -31.77219 -31.13595 -28.65745 -27.64928 -26.44549 -24.41803 -23.47917 -22.31204 -20.90809 -20.61263 -19.67049 -19.19332 -18.74848 -18.67350 -17.91530 -17.65330 -16.72494 -16.04450 -15.94754 -15.60761 -15.40097 -14.89853 -14.73479 -14.65175 -14.36603 -14.32906 -14.14952 -14.03864 -14.02423 -13.81563 -13.78743 -13.45146 -13.27791 -13.08804 -12.70835 -12.62890 -12.26131 -12.05797 -11.89379 -11.80815 -11.49149 -11.04993 -10.92633 -10.88813 -10.32302 -10.21616 -10.00005 -9.81767 -9.67440 -9.22581 -9.08493 -8.64527 -8.55013 -6.06100 -4.04746 2.09365 2.49268 2.91532 3.18692 3.32032 3.34967 3.39701 3.44491 3.56512 3.85015 3.97885 4.15364 4.23246 4.27098 4.30202 4.45093 4.47486 4.58908 4.72829 4.80601 4.98184 5.09466 5.21502 5.22378 5.28215 5.35697 5.47538 5.57515 5.64176 5.69087 6.03321 6.23886 6.37076 6.46541 6.47428 6.62147 6.81190 6.84282 7.23545 7.37125 7.75858 7.94539 8.50182 8.61035 8.97659 9.56313 11.07129 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002618 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.675656 B =10691.525945 C =11704.465583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.075 3.925 3 H 0.116 0.884 4 C 0.108 3.892 5 N -0.624 5.624 6 C 0.702 3.298 7 O -0.588 6.588 8 N -0.740 5.740 9 C 0.131 3.869 10 C -0.112 4.112 11 C -0.011 4.011 12 C -0.522 4.522 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C 0.110 3.890 21 C -0.186 4.186 22 C 0.041 3.959 23 H 0.118 0.882 24 C 0.454 3.546 25 F -0.172 7.172 26 F -0.177 7.177 27 F -0.180 7.180 28 O -0.338 6.338 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.394 0.606 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.014 0.986 41 H 0.263 0.737 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.550 25.124 -7.077 30.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C 0.017 3.983 3 H 0.133 0.867 4 C -0.015 4.015 5 N -0.362 5.362 6 C 0.403 3.597 7 O -0.466 6.466 8 N -0.396 5.396 9 C 0.008 3.992 10 C -0.151 4.151 11 C -0.049 4.049 12 C -0.560 4.560 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.707 3.293 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.188 1.188 20 C -0.015 4.015 21 C -0.225 4.225 22 C -0.019 4.019 23 H 0.136 0.864 24 C 0.400 3.600 25 F -0.153 7.153 26 F -0.158 7.158 27 F -0.161 7.161 28 O -0.256 6.256 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.230 0.770 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.123 0.877 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.580 25.382 -6.757 30.539 hybrid contribution 0.270 -0.228 -0.015 0.353 sum -15.310 25.155 -6.772 30.216 Atomic orbital electron populations 1.22978 0.95874 1.03720 1.04220 1.22597 0.94003 0.96923 0.84791 0.86684 1.22518 1.04540 0.78129 0.96309 1.46860 1.20396 1.06503 1.62462 1.15984 0.82375 0.81909 0.79423 1.90905 1.35674 1.71004 1.49010 1.45529 1.25120 1.04966 1.64016 1.21539 0.87615 0.91018 0.99053 1.21705 1.01159 0.90873 1.01315 1.19495 0.93588 0.95769 0.96006 1.21091 1.06881 0.89263 1.38726 0.91027 1.25028 0.98207 0.94798 0.95440 1.69915 1.36140 1.00548 1.47638 0.86775 0.83299 0.78980 0.80264 1.20252 1.21384 1.18841 1.21578 0.90737 0.98925 0.90246 1.22239 1.06268 0.95814 0.98224 1.22276 0.98148 0.93784 0.87659 0.86444 1.20522 0.74549 0.73765 0.91192 1.93232 1.37081 1.89612 1.95400 1.93199 1.67752 1.67179 1.87706 1.93191 1.94758 1.41741 1.86401 1.87629 1.41054 1.53704 1.43253 0.90346 0.89941 0.90865 0.90848 0.88031 0.77038 0.91895 0.91930 0.92222 0.92142 0.96258 0.96727 0.92702 0.89150 0.89120 0.87716 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.76 7.53 37.16 0.28 -0.48 16 2 C 0.08 0.48 3.87 -26.06 -0.10 0.38 16 3 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.11 0.92 6.04 -2.44 -0.01 0.90 16 5 N -0.62 -6.35 2.55 -177.66 -0.45 -6.80 16 6 C 0.70 10.25 8.22 -86.92 -0.71 9.53 16 7 O -0.59 -11.03 15.64 5.29 0.08 -10.94 16 8 N -0.74 -10.22 5.39 -65.22 -0.35 -10.57 16 9 C 0.13 2.19 5.67 -4.04 -0.02 2.17 16 10 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 11 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 12 C -0.52 -14.65 9.66 -34.44 -0.33 -14.99 16 13 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 16 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 20 C 0.11 0.74 5.14 -4.14 -0.02 0.72 16 21 C -0.19 -1.34 5.04 -28.31 -0.14 -1.48 16 22 C 0.04 0.30 1.81 -29.30 -0.05 0.25 16 23 H 0.12 0.56 4.51 -51.93 -0.23 0.32 16 24 C 0.45 4.21 2.80 37.16 0.10 4.31 16 25 F -0.17 -2.04 16.78 2.25 0.04 -2.00 16 26 F -0.18 -1.55 16.46 2.25 0.04 -1.51 16 27 F -0.18 -1.75 17.24 2.25 0.04 -1.72 16 28 O -0.34 -3.15 9.67 -34.10 -0.33 -3.48 16 29 H 0.08 0.25 3.32 -51.93 -0.17 0.08 16 30 H 0.08 0.20 8.13 -51.93 -0.42 -0.22 16 31 H 0.07 0.24 7.78 -51.93 -0.40 -0.16 16 32 H 0.07 0.48 7.97 -51.93 -0.41 0.07 16 33 H 0.10 1.11 7.00 -51.93 -0.36 0.75 16 34 H 0.39 4.36 6.04 -40.82 -0.25 4.12 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.09 0.38 5.24 -51.93 -0.27 0.11 16 43 H 0.09 0.56 6.12 -51.93 -0.32 0.24 16 44 H 0.10 0.54 7.48 -51.93 -0.39 0.15 16 45 H 0.09 0.93 7.81 -51.93 -0.41 0.53 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -35.17 359.66 -6.89 -42.06 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.11 Total: -1.16 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.37 Total: 0.56 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.03 Total: -44.37 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.25 Total: -14.42 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.11 Total: -5.23 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.17 -6.89 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875236143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.472 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds