Wall clock time and date at job start Tue Mar 31 2020 20:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.33850 * 2 1 4 4 C 1.54291 * 109.40876 * 119.79987 * 2 1 3 5 5 N 1.48182 * 110.69522 * 80.73723 * 4 2 1 6 6 C 1.34770 * 118.51308 * 138.79756 * 5 4 2 7 7 O 1.21591 * 120.00044 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00288 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99994 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47050 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47421 * 180.02562 * 10 9 8 12 12 C 1.50692 * 109.47017 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00610 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99678 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99840 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00128 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47420 * 89.99747 * 16 14 12 18 18 H 1.48501 * 109.47050 * 209.99890 * 16 14 12 19 19 H 1.48496 * 109.46965 * 329.99470 * 16 14 12 20 20 C 1.44463 * 122.97432 * 318.77247 * 5 4 2 21 21 C 1.54872 * 109.32723 * 88.93398 * 20 5 4 22 22 C 1.47687 * 109.67949 * 290.10152 * 21 20 5 23 23 H 1.08998 * 108.64506 * 299.72674 * 22 21 20 24 24 C 1.52996 * 108.64502 * 181.88580 * 22 21 20 25 25 F 1.39897 * 109.47281 * 295.88020 * 24 22 21 26 26 F 1.39899 * 109.47195 * 55.88262 * 24 22 21 27 27 F 1.39894 * 109.47141 * 175.87855 * 24 22 21 28 28 O 1.40526 * 109.40291 * 240.20236 * 2 1 3 29 29 H 1.09003 * 109.47122 * 180.11139 * 1 2 3 30 30 H 1.09003 * 109.47075 * 300.10867 * 1 2 3 31 31 H 1.08995 * 109.47418 * 60.10786 * 1 2 3 32 32 H 1.09005 * 109.23080 * 320.42158 * 4 2 1 33 33 H 1.09000 * 109.22978 * 201.04882 * 4 2 1 34 34 H 0.97000 * 119.99412 * 0.02562 * 8 6 5 35 35 H 1.09003 * 109.47100 * 299.99931 * 9 8 6 36 36 H 1.09001 * 109.47557 * 60.00153 * 9 8 6 37 37 H 1.09003 * 109.46772 * 299.99714 * 10 9 8 38 38 H 1.09001 * 109.47156 * 59.99490 * 10 9 8 39 39 H 1.08995 * 109.46792 * 299.99940 * 11 10 9 40 40 H 1.09002 * 109.46661 * 59.99558 * 11 10 9 41 41 H 0.97004 * 119.99887 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.49222 * 328.97681 * 20 5 4 43 43 H 1.08997 * 109.51385 * 208.90472 * 20 5 4 44 44 H 1.08997 * 109.43274 * 170.03681 * 21 20 5 45 45 H 1.09004 * 109.43398 * 50.16530 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8909 1.0285 0.0000 4 6 2.0427 -0.7232 1.2628 5 7 2.0062 -2.1927 1.0758 6 6 3.0414 -2.9252 1.5322 7 8 3.9774 -2.3780 2.0827 8 7 3.0391 -4.2642 1.3786 9 6 4.1646 -5.0603 1.8743 10 6 3.9140 -6.5396 1.5746 11 6 5.0892 -7.3712 2.0928 12 6 4.8420 -8.8282 1.7981 13 1 3.9372 -9.1310 1.2923 14 6 5.7712 -9.7748 2.1744 15 7 5.5553 -11.0465 1.9177 16 14 7.3360 -9.2513 3.0500 17 1 7.1068 -9.2536 4.5172 18 1 8.4297 -10.1995 2.7184 19 1 7.7156 -7.8846 2.6104 20 6 0.9112 -2.8759 0.4269 21 6 1.1820 -2.9471 -1.0963 22 6 1.0672 -1.5977 -1.6855 23 1 0.0573 -1.2262 -1.5114 24 6 1.2921 -1.7024 -3.1952 25 9 2.5998 -2.1332 -3.4431 26 9 0.3875 -2.6208 -3.7388 27 9 1.0945 -0.4489 -3.7841 28 8 1.9968 -0.6587 -1.1502 29 1 -0.3633 -1.0277 0.0020 30 1 -0.3633 0.5155 0.8890 31 1 -0.3634 0.5121 -0.8909 32 1 1.4138 -0.4535 2.1113 33 1 3.0679 -0.4121 1.4634 34 1 2.2926 -4.7006 0.9392 35 1 5.0817 -4.7400 1.3799 36 1 4.2636 -4.9189 2.9505 37 1 2.9968 -6.8601 2.0687 38 1 3.8153 -6.6806 0.4983 39 1 6.0066 -7.0507 1.5991 40 1 5.1874 -7.2300 3.1692 41 1 6.2089 -11.7126 2.1828 42 1 -0.0153 -2.3305 0.6066 43 1 0.8228 -3.8854 0.8283 44 1 0.4538 -3.6100 -1.5635 45 1 2.1865 -3.3337 -1.2683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875236143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:45 Heat of formation + Delta-G solvation = -230.726952 kcal Electronic energy + Delta-G solvation = -31075.208874 eV Core-core repulsion = 26291.863188 eV Total energy + Delta-G solvation = -4783.345686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.17686 -48.68661 -48.64686 -42.07167 -40.39556 -37.11714 -36.61856 -35.25263 -34.72822 -33.25462 -32.01292 -29.33861 -29.04979 -27.35887 -25.14131 -24.77240 -23.40142 -22.22374 -21.44836 -20.75668 -19.87262 -19.61221 -19.36921 -18.94168 -18.64826 -18.28793 -17.04090 -16.95661 -16.39649 -16.29874 -16.02201 -15.89712 -15.55347 -15.44579 -15.10593 -15.07872 -14.94611 -14.83561 -14.80580 -14.77186 -14.52945 -14.11627 -14.06714 -13.76152 -13.56732 -13.55368 -13.08660 -12.79843 -12.72014 -12.68558 -12.41775 -12.02442 -11.91661 -11.78062 -11.59472 -11.49273 -11.32352 -11.04516 -10.89694 -10.75571 -10.23284 -9.55144 -8.29051 -6.32553 1.36861 1.38969 1.45138 1.50699 1.60356 2.10630 2.30795 2.36764 2.69051 2.91738 2.93179 3.06886 3.36397 3.60984 3.71343 3.76149 3.83820 4.01702 4.05017 4.11123 4.21006 4.22770 4.32988 4.49527 4.53728 4.60110 4.71088 4.83676 4.87146 4.90339 4.94396 4.98454 5.04343 5.24893 5.41257 5.50143 5.54813 5.56442 5.65606 5.81817 5.96890 6.28031 6.75284 6.93698 7.32297 7.51953 8.87311 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.002618 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.675656 B =10691.525945 C =11704.465583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.075 3.925 3 H 0.126 0.874 4 C 0.103 3.897 5 N -0.615 5.615 6 C 0.695 3.305 7 O -0.636 6.636 8 N -0.733 5.733 9 C 0.146 3.854 10 C -0.098 4.098 11 C -0.012 4.012 12 C -0.529 4.529 13 H 0.039 0.961 14 C 0.005 3.995 15 N -0.950 5.950 16 Si 0.946 3.054 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.250 1.250 20 C 0.103 3.897 21 C -0.185 4.185 22 C 0.042 3.958 23 H 0.153 0.847 24 C 0.449 3.551 25 F -0.193 7.193 26 F -0.174 7.174 27 F -0.184 7.184 28 O -0.367 6.367 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.408 0.592 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.020 0.980 41 H 0.266 0.734 42 H 0.128 0.872 43 H 0.099 0.901 44 H 0.129 0.871 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 26.980 -6.590 33.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.017 3.983 3 H 0.144 0.856 4 C -0.019 4.019 5 N -0.351 5.351 6 C 0.396 3.604 7 O -0.518 6.518 8 N -0.390 5.390 9 C 0.021 3.979 10 C -0.136 4.136 11 C -0.050 4.050 12 C -0.567 4.567 13 H 0.058 0.942 14 C -0.191 4.191 15 N -0.591 5.591 16 Si 0.769 3.231 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.173 1.173 20 C -0.020 4.020 21 C -0.223 4.223 22 C -0.017 4.017 23 H 0.170 0.830 24 C 0.394 3.606 25 F -0.175 7.175 26 F -0.155 7.155 27 F -0.165 7.165 28 O -0.286 6.286 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.247 0.753 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.146 0.854 43 H 0.117 0.883 44 H 0.147 0.853 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.433 27.261 -6.301 32.966 hybrid contribution 0.737 -0.791 -0.249 1.109 sum -16.696 26.471 -6.550 31.974 Atomic orbital electron populations 1.22942 0.93122 1.04518 1.05678 1.22732 0.96185 0.96655 0.82732 0.85613 1.22709 1.03426 0.77157 0.98616 1.46942 1.19820 1.07045 1.61341 1.16221 0.82856 0.81968 0.79341 1.90869 1.37838 1.71856 1.51243 1.45244 1.24827 1.04884 1.64039 1.21139 0.88145 0.90029 0.98596 1.21464 0.99517 0.91327 1.01270 1.19457 0.95480 0.93544 0.96500 1.21453 1.05619 0.91891 1.37718 0.94245 1.25960 1.01982 0.94720 0.96479 1.70057 1.37699 1.01911 1.49432 0.85721 0.78824 0.79146 0.79374 1.19106 1.21088 1.17345 1.21916 0.90822 0.99768 0.89487 1.22252 1.05246 0.96115 0.98735 1.22455 0.99536 0.93810 0.85904 0.83030 1.20913 0.73703 0.73514 0.92431 1.93188 1.38791 1.89862 1.95636 1.93200 1.67408 1.67059 1.87859 1.93178 1.94691 1.42000 1.86654 1.87613 1.42503 1.54277 1.44217 0.89643 0.88037 0.89941 0.88370 0.91294 0.75339 0.93291 0.92508 0.91387 0.91926 0.96355 0.96115 0.92517 0.85444 0.88284 0.85270 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.61 7.53 71.98 0.54 -0.07 16 2 C 0.07 0.78 3.87 31.03 0.12 0.90 16 3 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 4 C 0.10 1.59 6.04 86.49 0.52 2.12 16 5 N -0.62 -11.49 2.55 -834.26 -2.13 -13.62 16 6 C 0.69 19.93 8.22 179.06 1.47 21.40 16 7 O -0.64 -24.23 15.64 -4.00 -0.06 -24.29 16 8 N -0.73 -19.56 5.39 -478.53 -2.58 -22.14 16 9 C 0.15 4.78 5.67 86.38 0.49 5.27 16 10 C -0.10 -3.54 5.27 30.60 0.16 -3.38 16 11 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 12 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 13 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 14 C 0.01 0.32 5.47 84.65 0.46 0.78 16 15 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 16 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 19 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 20 C 0.10 1.07 5.14 87.40 0.45 1.52 16 21 C -0.18 -2.24 5.04 29.57 0.15 -2.09 16 22 C 0.04 0.53 1.81 28.93 0.05 0.58 16 23 H 0.15 0.83 4.51 -2.39 -0.01 0.82 16 24 C 0.45 7.77 2.80 71.98 0.20 7.98 16 25 F -0.19 -4.61 16.78 44.97 0.75 -3.86 16 26 F -0.17 -2.75 16.46 44.97 0.74 -2.00 16 27 F -0.18 -3.37 17.24 44.97 0.78 -2.59 16 28 O -0.37 -6.29 9.67 -144.92 -1.40 -7.69 16 29 H 0.09 0.11 3.32 -2.39 -0.01 0.10 16 30 H 0.10 0.00 8.13 -2.39 -0.02 -0.02 16 31 H 0.08 0.17 7.78 -2.39 -0.02 0.16 16 32 H 0.10 1.02 7.97 -2.38 -0.02 1.00 16 33 H 0.07 1.54 7.00 -2.39 -0.02 1.52 16 34 H 0.41 8.37 6.04 -92.71 -0.56 7.81 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 40 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.13 0.44 5.24 -2.39 -0.01 0.43 16 43 H 0.10 0.91 6.12 -2.39 -0.01 0.89 16 44 H 0.13 0.93 7.48 -2.39 -0.02 0.91 16 45 H 0.06 1.21 7.81 -2.38 -0.02 1.19 16 Total: -1.00 -79.14 359.66 3.70 -75.45 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.42 Total: 8.50 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.99 Total: 4.80 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -4.41 Total: -94.90 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.46 Total: -31.99 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 2.27 Total: -8.46 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -79.14 3.70 -75.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875236143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.281 kcal (2) G-P(sol) polarization free energy of solvation -79.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds