Wall clock time and date at job start Tue Mar 31 2020 20:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46925 * 2 1 4 4 C 1.54799 * 109.47053 * 240.00011 * 2 1 3 5 5 N 1.45123 * 109.53263 * 172.10487 * 4 2 1 6 6 C 1.34774 * 118.75854 * 269.29680 * 5 4 2 7 7 O 1.21283 * 120.00064 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99825 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.47391 * 39.99676 * 8 6 5 10 10 N 1.46900 * 109.46896 * 160.00255 * 8 6 5 11 11 C 1.53001 * 109.46761 * 279.99955 * 8 6 5 12 12 C 1.53002 * 109.46852 * 175.00207 * 11 8 6 13 13 C 1.50703 * 109.47207 * 179.97438 * 12 11 8 14 14 H 1.07994 * 119.99603 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99838 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00380 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99848 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47261 * 239.99776 * 17 15 13 20 20 H 1.48500 * 109.47454 * 119.99769 * 17 15 13 21 21 C 1.47514 * 122.48208 * 89.56728 * 5 4 2 22 22 C 1.53945 * 110.82005 * 317.98277 * 21 5 4 23 23 C 1.51531 * 109.72793 * 320.30030 * 22 21 5 24 24 H 1.08997 * 109.59160 * 331.51555 * 23 22 21 25 25 C 1.53000 * 109.59104 * 211.07895 * 23 22 21 26 26 F 1.39902 * 109.47481 * 300.72938 * 25 23 22 27 27 F 1.39905 * 109.46959 * 60.72716 * 25 23 22 28 28 F 1.39895 * 109.47560 * 180.72161 * 25 23 22 29 29 O 1.38022 * 109.46597 * 119.98920 * 2 1 3 30 30 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47689 * 300.00086 * 1 2 3 32 32 H 1.09007 * 109.46895 * 59.99717 * 1 2 3 33 33 H 1.09000 * 109.46388 * 52.08853 * 4 2 1 34 34 H 1.09004 * 109.45770 * 292.12143 * 4 2 1 35 35 H 1.00890 * 111.00091 * 59.99779 * 10 8 6 36 36 H 1.00903 * 110.99631 * 183.95858 * 10 8 6 37 37 H 1.08993 * 109.47525 * 55.00140 * 11 8 6 38 38 H 1.09006 * 109.47247 * 294.99591 * 11 8 6 39 39 H 1.09005 * 109.47493 * 59.99815 * 12 11 8 40 40 H 1.08998 * 109.47006 * 299.99778 * 12 11 8 41 41 H 0.97001 * 119.99667 * 0.02562 * 16 15 13 42 42 H 1.09001 * 109.16140 * 78.49648 * 21 5 4 43 43 H 1.08999 * 109.16215 * 197.69958 * 21 5 4 44 44 H 1.09001 * 109.45475 * 200.17795 * 22 21 5 45 45 H 1.08993 * 109.28096 * 80.32202 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7297 -1.2639 5 7 3.4850 -0.5700 -1.3630 6 6 3.9750 0.4800 -2.0514 7 8 3.2170 1.2693 -2.5742 8 6 5.4648 0.6732 -2.1715 9 1 5.9453 -0.2931 -2.3242 10 7 5.7542 1.5501 -3.3140 11 6 6.0011 1.3125 -0.8891 12 6 7.5273 1.3945 -0.9599 13 6 8.0556 2.0248 0.3030 14 1 7.3712 2.3361 1.0782 15 6 9.4125 2.2049 0.4680 16 7 10.2458 1.8263 -0.4763 17 14 10.0674 2.9856 2.0337 18 1 8.9332 3.3196 2.9322 19 1 10.8116 4.2252 1.6949 20 1 10.9780 2.0331 2.7184 21 6 4.4317 -1.5166 -0.7435 22 6 3.9602 -1.9186 0.6657 23 6 3.3880 -0.7096 1.3779 24 1 3.8652 0.1955 1.0025 25 6 3.6341 -0.8365 2.8826 26 9 3.0266 -2.0038 3.3578 27 9 5.0104 -0.8945 3.1268 28 9 3.0905 0.2727 3.5393 29 8 1.9900 -0.6505 1.1271 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.5717 -0.3040 -2.1482 34 1 1.8021 -1.7900 -1.1961 35 1 5.3194 2.4528 -3.1962 36 1 6.7490 1.6434 -3.4552 37 1 5.7092 0.7066 -0.0314 38 1 5.5879 2.3156 -0.7829 39 1 7.8192 2.0005 -1.8176 40 1 7.9405 0.3915 -1.0661 41 1 9.9058 1.4206 -1.2891 42 1 4.5067 -2.4073 -1.3673 43 1 5.4126 -1.0467 -0.6725 44 1 4.8049 -2.3083 1.2338 45 1 3.1926 -2.6880 0.5826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877384071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:29 Heat of formation + Delta-G solvation = -241.383799 kcal Electronic energy + Delta-G solvation = -32390.758971 eV Core-core repulsion = 27606.951169 eV Total energy + Delta-G solvation = -4783.807802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.18139 -47.68631 -47.64873 -40.97460 -39.06098 -35.96842 -35.73748 -34.30031 -33.17092 -30.83406 -29.88833 -28.66344 -27.68602 -25.60144 -24.05952 -23.48709 -22.16984 -21.77094 -20.88872 -19.13387 -18.66812 -18.52897 -18.15080 -17.77888 -16.92392 -16.73097 -16.59382 -15.43936 -15.35534 -14.69633 -14.52940 -14.50577 -14.43415 -14.28326 -14.07057 -13.87826 -13.83302 -13.78532 -13.76817 -13.34073 -13.30383 -13.08985 -12.96090 -12.69698 -12.41725 -12.24015 -11.87176 -11.84929 -11.64140 -11.52571 -11.32168 -10.99913 -10.87836 -10.35407 -10.24659 -10.18091 -10.09650 -9.52336 -8.81540 -8.77626 -8.45164 -8.36396 -6.47629 -4.18877 2.27587 2.62923 2.75684 3.02964 3.39022 3.41476 3.55352 3.59424 3.78873 4.19241 4.36555 4.39149 4.46255 4.52520 4.67346 4.73979 4.85736 4.90949 4.97049 5.00769 5.22723 5.27241 5.31856 5.32488 5.39743 5.46349 5.49707 5.50202 5.60100 5.69744 5.85907 5.99181 6.22022 6.38067 6.57953 6.94019 7.10142 7.13733 7.23418 7.37045 7.68726 8.04311 8.16664 8.33434 8.75800 9.53080 10.92789 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.004786 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.898789 B = 5849.309296 C = 7784.387862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.085 3.915 3 H 0.060 0.940 4 C 0.081 3.919 5 N -0.620 5.620 6 C 0.522 3.478 7 O -0.529 6.529 8 C 0.070 3.930 9 H 0.098 0.902 10 N -0.829 5.829 11 C -0.133 4.133 12 C 0.012 3.988 13 C -0.604 4.604 14 H 0.049 0.951 15 C 0.019 3.981 16 N -0.910 5.910 17 Si 1.071 2.929 18 H -0.289 1.289 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.101 3.899 22 C -0.161 4.161 23 C 0.064 3.936 24 H 0.106 0.894 25 C 0.460 3.540 26 F -0.177 7.177 27 F -0.168 7.168 28 F -0.177 7.177 29 O -0.367 6.367 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.347 0.653 36 H 0.353 0.647 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.269 0.731 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.911 -9.215 1.669 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.026 3.974 3 H 0.078 0.922 4 C -0.042 4.042 5 N -0.355 5.355 6 C 0.311 3.689 7 O -0.404 6.404 8 C -0.045 4.045 9 H 0.116 0.884 10 N -0.361 5.361 11 C -0.173 4.173 12 C -0.025 4.025 13 C -0.642 4.642 14 H 0.067 0.933 15 C -0.185 4.185 16 N -0.546 5.546 17 Si 0.899 3.101 18 H -0.215 1.215 19 H -0.213 1.213 20 H -0.212 1.212 21 C -0.021 4.021 22 C -0.199 4.199 23 C 0.005 3.995 24 H 0.124 0.876 25 C 0.406 3.594 26 F -0.158 7.158 27 F -0.149 7.149 28 F -0.158 7.158 29 O -0.286 6.286 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.160 0.840 36 H 0.168 0.832 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.437 -8.959 1.848 18.812 hybrid contribution -0.615 0.158 0.113 0.645 sum -17.053 -8.801 1.962 19.290 Atomic orbital electron populations 1.21708 0.91412 1.03231 1.03180 1.22170 0.95513 0.95440 0.84252 0.92239 1.22349 0.80733 1.01624 0.99532 1.47966 1.06182 1.27158 1.54221 1.21005 0.91478 0.79860 0.76582 1.90639 1.60180 1.43317 1.46222 1.21582 0.90710 0.99389 0.92825 0.88440 1.58748 1.17874 1.18723 1.40735 1.22344 1.00478 0.99966 0.94518 1.19226 0.88746 0.96575 0.97922 1.22014 0.94551 1.44331 1.03346 0.93274 1.25817 0.93567 0.95923 1.03243 1.70752 1.37636 1.38425 1.07772 0.83515 0.75419 0.76565 0.74602 1.21472 1.21260 1.21191 1.22180 0.93608 0.93972 0.92375 1.22515 1.03301 0.97593 0.96514 1.22657 0.85240 1.02522 0.89091 0.87601 1.20285 0.74392 0.74121 0.90608 1.93188 1.83225 1.49113 1.90276 1.93265 1.30423 1.96079 1.95119 1.93203 1.85785 1.53371 1.83482 1.86218 1.19851 1.77190 1.45339 0.91449 0.91328 0.90306 0.88548 0.89715 0.83993 0.83177 0.92567 0.92345 0.97225 0.97191 0.92072 0.90213 0.87904 0.87965 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.55 37.16 0.36 -0.80 16 2 C 0.09 0.93 3.25 -25.78 -0.08 0.85 16 3 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 4 C 0.08 0.86 4.86 -3.83 -0.02 0.85 16 5 N -0.62 -7.57 2.18 -172.23 -0.38 -7.94 16 6 C 0.52 8.07 6.88 -10.98 -0.08 7.99 16 7 O -0.53 -9.56 15.68 5.55 0.09 -9.48 16 8 C 0.07 1.11 2.34 -68.86 -0.16 0.95 16 9 H 0.10 1.45 6.90 -51.93 -0.36 1.09 16 10 N -0.83 -13.47 8.94 -5.65 -0.05 -13.52 16 11 C -0.13 -2.47 4.38 -26.73 -0.12 -2.59 16 12 C 0.01 0.28 4.05 -27.88 -0.11 0.17 16 13 C -0.60 -16.25 9.11 -34.44 -0.31 -16.56 16 14 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 15 C 0.02 0.52 5.46 -17.82 -0.10 0.43 16 16 N -0.91 -26.63 13.65 55.43 0.76 -25.87 16 17 Si 1.07 24.81 29.90 -169.99 -5.08 19.72 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.10 1.05 5.57 -2.99 -0.02 1.03 16 22 C -0.16 -1.56 4.99 -26.98 -0.13 -1.70 16 23 C 0.06 0.77 2.17 -27.47 -0.06 0.71 16 24 H 0.11 1.42 6.56 -51.93 -0.34 1.08 16 25 C 0.46 5.95 2.79 37.16 0.10 6.05 16 26 F -0.18 -2.20 16.96 2.25 0.04 -2.17 16 27 F -0.17 -2.34 16.54 2.25 0.04 -2.31 16 28 F -0.18 -2.52 17.26 2.25 0.04 -2.48 16 29 O -0.37 -4.31 9.00 -26.56 -0.24 -4.55 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.10 1.10 7.27 -51.93 -0.38 0.72 16 34 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.35 5.76 8.58 -39.30 -0.34 5.42 16 36 H 0.35 5.69 7.55 -39.29 -0.30 5.40 16 37 H 0.06 0.99 5.84 -51.93 -0.30 0.69 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.01 0.23 6.73 -51.93 -0.35 -0.12 16 40 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 41 H 0.27 7.74 7.22 -40.82 -0.29 7.44 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 1.21 4.46 -51.93 -0.23 0.98 16 44 H 0.10 0.93 7.21 -51.93 -0.37 0.56 16 45 H 0.10 0.81 8.01 -51.93 -0.42 0.40 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -31.22 365.89 -6.26 -37.48 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.26 Total: 8.21 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.73 Total: -2.62 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.33 Total: -47.34 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.15 Total: -14.02 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.11 Total: -6.95 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.22 -6.26 -37.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877384071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.901 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds