Wall clock time and date at job start Tue Mar 31 2020 20:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46925 * 2 1 4 4 C 1.54799 * 109.47053 * 240.00011 * 2 1 3 5 5 N 1.45123 * 109.53263 * 172.10487 * 4 2 1 6 6 C 1.34774 * 118.75854 * 269.29680 * 5 4 2 7 7 O 1.21283 * 120.00064 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99825 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.47391 * 39.99676 * 8 6 5 10 10 N 1.46900 * 109.46896 * 160.00255 * 8 6 5 11 11 C 1.53001 * 109.46761 * 279.99955 * 8 6 5 12 12 C 1.53002 * 109.46852 * 175.00207 * 11 8 6 13 13 C 1.50703 * 109.47207 * 179.97438 * 12 11 8 14 14 H 1.07994 * 119.99603 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99838 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00380 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99848 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47261 * 239.99776 * 17 15 13 20 20 H 1.48500 * 109.47454 * 119.99769 * 17 15 13 21 21 C 1.47514 * 122.48208 * 89.56728 * 5 4 2 22 22 C 1.53945 * 110.82005 * 317.98277 * 21 5 4 23 23 C 1.51531 * 109.72793 * 320.30030 * 22 21 5 24 24 H 1.08997 * 109.59160 * 331.51555 * 23 22 21 25 25 C 1.53000 * 109.59104 * 211.07895 * 23 22 21 26 26 F 1.39902 * 109.47481 * 300.72938 * 25 23 22 27 27 F 1.39905 * 109.46959 * 60.72716 * 25 23 22 28 28 F 1.39895 * 109.47560 * 180.72161 * 25 23 22 29 29 O 1.38022 * 109.46597 * 119.98920 * 2 1 3 30 30 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47689 * 300.00086 * 1 2 3 32 32 H 1.09007 * 109.46895 * 59.99717 * 1 2 3 33 33 H 1.09000 * 109.46388 * 52.08853 * 4 2 1 34 34 H 1.09004 * 109.45770 * 292.12143 * 4 2 1 35 35 H 1.00890 * 111.00091 * 59.99779 * 10 8 6 36 36 H 1.00903 * 110.99631 * 183.95858 * 10 8 6 37 37 H 1.08993 * 109.47525 * 55.00140 * 11 8 6 38 38 H 1.09006 * 109.47247 * 294.99591 * 11 8 6 39 39 H 1.09005 * 109.47493 * 59.99815 * 12 11 8 40 40 H 1.08998 * 109.47006 * 299.99778 * 12 11 8 41 41 H 0.97001 * 119.99667 * 0.02562 * 16 15 13 42 42 H 1.09001 * 109.16140 * 78.49648 * 21 5 4 43 43 H 1.08999 * 109.16215 * 197.69958 * 21 5 4 44 44 H 1.09001 * 109.45475 * 200.17795 * 22 21 5 45 45 H 1.08993 * 109.28096 * 80.32202 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7297 -1.2639 5 7 3.4850 -0.5700 -1.3630 6 6 3.9750 0.4800 -2.0514 7 8 3.2170 1.2693 -2.5742 8 6 5.4648 0.6732 -2.1715 9 1 5.9453 -0.2931 -2.3242 10 7 5.7542 1.5501 -3.3140 11 6 6.0011 1.3125 -0.8891 12 6 7.5273 1.3945 -0.9599 13 6 8.0556 2.0248 0.3030 14 1 7.3712 2.3361 1.0782 15 6 9.4125 2.2049 0.4680 16 7 10.2458 1.8263 -0.4763 17 14 10.0674 2.9856 2.0337 18 1 8.9332 3.3196 2.9322 19 1 10.8116 4.2252 1.6949 20 1 10.9780 2.0331 2.7184 21 6 4.4317 -1.5166 -0.7435 22 6 3.9602 -1.9186 0.6657 23 6 3.3880 -0.7096 1.3779 24 1 3.8652 0.1955 1.0025 25 6 3.6341 -0.8365 2.8826 26 9 3.0266 -2.0038 3.3578 27 9 5.0104 -0.8945 3.1268 28 9 3.0905 0.2727 3.5393 29 8 1.9900 -0.6505 1.1271 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.5717 -0.3040 -2.1482 34 1 1.8021 -1.7900 -1.1961 35 1 5.3194 2.4528 -3.1962 36 1 6.7490 1.6434 -3.4552 37 1 5.7092 0.7066 -0.0314 38 1 5.5879 2.3156 -0.7829 39 1 7.8192 2.0005 -1.8176 40 1 7.9405 0.3915 -1.0661 41 1 9.9058 1.4206 -1.2891 42 1 4.5067 -2.4073 -1.3673 43 1 5.4126 -1.0467 -0.6725 44 1 4.8049 -2.3083 1.2338 45 1 3.1926 -2.6880 0.5826 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877384071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:28 Heat of formation + Delta-G solvation = -261.668651 kcal Electronic energy + Delta-G solvation = -32391.638588 eV Core-core repulsion = 27606.951169 eV Total energy + Delta-G solvation = -4784.687419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.24110 -48.77722 -48.68972 -42.01461 -40.14911 -37.44670 -36.77845 -35.32024 -34.99555 -31.70555 -31.58481 -29.61889 -28.84710 -27.02240 -25.37319 -24.82105 -23.29044 -22.70182 -22.38789 -20.24957 -19.69608 -19.56092 -19.35260 -19.01388 -18.50401 -17.90218 -17.58263 -16.56119 -16.52417 -15.89632 -15.73574 -15.67934 -15.60492 -15.57267 -15.44771 -15.17356 -15.14896 -14.89605 -14.85149 -14.60452 -14.37504 -14.18733 -14.02746 -13.90679 -13.49386 -13.43520 -13.10138 -12.98026 -12.76898 -12.66078 -12.53023 -12.30309 -12.13744 -11.96993 -11.95065 -11.87396 -11.03072 -10.92112 -10.69818 -10.55105 -9.84383 -9.74525 -8.67800 -6.39435 1.29490 1.40458 1.51220 1.58351 1.74562 1.75181 2.07001 2.52811 2.60428 2.80008 3.15090 3.20336 3.29704 3.47439 3.59719 3.62513 3.79603 3.83000 3.93771 3.99614 4.03970 4.10249 4.16103 4.40454 4.42897 4.56969 4.59143 4.65053 4.69483 4.77697 4.83451 4.86060 4.95062 5.19800 5.26454 5.37129 5.44251 5.86737 5.95794 6.04407 6.17835 6.19534 6.33858 6.59555 6.99258 7.39342 8.73481 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.004786 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.898789 B = 5849.309296 C = 7784.387862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.085 3.915 3 H 0.031 0.969 4 C 0.082 3.918 5 N -0.611 5.611 6 C 0.522 3.478 7 O -0.560 6.560 8 C 0.077 3.923 9 H 0.113 0.887 10 N -0.828 5.828 11 C -0.116 4.116 12 C 0.017 3.983 13 C -0.617 4.617 14 H 0.042 0.958 15 C -0.029 4.029 16 N -0.934 5.934 17 Si 1.111 2.889 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.277 1.277 21 C 0.097 3.903 22 C -0.154 4.154 23 C 0.065 3.935 24 H 0.087 0.913 25 C 0.460 3.540 26 F -0.171 7.171 27 F -0.176 7.176 28 F -0.188 7.188 29 O -0.368 6.368 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.344 0.656 36 H 0.352 0.648 37 H 0.064 0.936 38 H 0.041 0.959 39 H -0.001 1.001 40 H 0.004 0.996 41 H 0.260 0.740 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 -10.791 2.071 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.026 3.974 3 H 0.049 0.951 4 C -0.041 4.041 5 N -0.344 5.344 6 C 0.310 3.690 7 O -0.438 6.438 8 C -0.038 4.038 9 H 0.131 0.869 10 N -0.359 5.359 11 C -0.156 4.156 12 C -0.020 4.020 13 C -0.655 4.655 14 H 0.060 0.940 15 C -0.228 4.228 16 N -0.572 5.572 17 Si 0.934 3.066 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.202 1.202 21 C -0.024 4.024 22 C -0.192 4.192 23 C 0.005 3.995 24 H 0.105 0.895 25 C 0.405 3.595 26 F -0.153 7.153 27 F -0.157 7.157 28 F -0.169 7.169 29 O -0.287 6.287 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.157 0.843 36 H 0.167 0.833 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.022 0.978 41 H 0.070 0.930 42 H 0.129 0.871 43 H 0.105 0.895 44 H 0.129 0.871 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.574 -10.570 2.259 20.632 hybrid contribution -0.309 0.631 0.011 0.703 sum -17.884 -9.939 2.270 20.585 Atomic orbital electron populations 1.21713 0.89257 1.04451 1.03566 1.22237 0.97084 0.93892 0.84209 0.95112 1.22492 0.79386 1.03267 0.98985 1.47993 1.07322 1.26268 1.52855 1.20818 0.90804 0.80427 0.76959 1.90627 1.60563 1.44638 1.47928 1.21511 0.91639 0.99619 0.91045 0.86925 1.58771 1.17746 1.18675 1.40722 1.22089 0.97345 0.99554 0.96599 1.19110 0.91565 0.95440 0.95914 1.22416 0.94674 1.43952 1.04469 0.94003 1.27115 0.94412 0.95984 1.05308 1.70864 1.38018 1.40092 1.08199 0.82987 0.75567 0.76228 0.71829 1.20132 1.20575 1.20213 1.22352 0.92342 0.94415 0.93283 1.22526 1.04144 0.96890 0.95649 1.22660 0.85558 1.02863 0.88424 0.89519 1.20449 0.73962 0.73933 0.91134 1.93194 1.83071 1.48727 1.90299 1.93247 1.31106 1.96107 1.95236 1.93180 1.85904 1.54021 1.83816 1.86232 1.19582 1.77084 1.45808 0.89759 0.91563 0.89357 0.89115 0.86748 0.84320 0.83287 0.91767 0.94042 0.98244 0.97798 0.93007 0.87056 0.89478 0.87140 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.55 71.98 0.69 -1.26 16 2 C 0.08 1.74 3.25 31.21 0.10 1.84 16 3 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 4 C 0.08 1.55 4.86 87.25 0.42 1.97 16 5 N -0.61 -13.79 2.18 -817.22 -1.78 -15.57 16 6 C 0.52 15.70 6.88 87.66 0.60 16.31 16 7 O -0.56 -20.13 15.68 -3.04 -0.05 -20.18 16 8 C 0.08 2.41 2.34 44.17 0.10 2.51 16 9 H 0.11 3.19 6.90 -2.39 -0.02 3.17 16 10 N -0.83 -26.89 8.94 -171.80 -1.54 -28.43 16 11 C -0.12 -4.33 4.38 30.60 0.13 -4.19 16 12 C 0.02 0.78 4.05 29.85 0.12 0.90 16 13 C -0.62 -33.45 9.11 25.60 0.23 -33.22 16 14 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 15 C -0.03 -1.64 5.46 84.65 0.46 -1.18 16 16 N -0.93 -55.12 13.65 21.45 0.29 -54.83 16 17 Si 1.11 49.56 29.90 68.60 2.05 51.61 16 18 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 21 C 0.10 1.77 5.57 86.50 0.48 2.25 16 22 C -0.15 -2.58 4.99 30.43 0.15 -2.43 16 23 C 0.06 1.46 2.17 30.11 0.07 1.52 16 24 H 0.09 2.30 6.56 -2.39 -0.02 2.29 16 25 C 0.46 11.42 2.79 71.98 0.20 11.62 16 26 F -0.17 -3.98 16.96 44.97 0.76 -3.22 16 27 F -0.18 -4.78 16.54 44.97 0.74 -4.04 16 28 F -0.19 -5.28 17.26 44.97 0.78 -4.50 16 29 O -0.37 -8.00 9.00 -117.95 -1.06 -9.06 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.09 1.89 7.27 -2.39 -0.02 1.88 16 34 H 0.11 1.54 8.11 -2.38 -0.02 1.52 16 35 H 0.34 11.58 8.58 -89.70 -0.77 10.81 16 36 H 0.35 11.45 7.55 -89.69 -0.68 10.77 16 37 H 0.06 2.27 5.84 -2.39 -0.01 2.26 16 38 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.00 -0.03 6.73 -2.38 -0.02 -0.05 16 40 H 0.00 0.18 8.01 -2.39 -0.02 0.16 16 41 H 0.26 15.26 7.22 -92.71 -0.67 14.59 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.09 1.90 4.46 -2.39 -0.01 1.89 16 44 H 0.11 1.73 7.21 -2.39 -0.02 1.71 16 45 H 0.12 1.51 8.01 -2.39 -0.02 1.49 16 Total: -1.00 -67.11 365.89 3.67 -63.44 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.30 Total: 28.12 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 3.77 Total: -3.35 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -3.03 Total: -98.83 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -1.11 Total: -29.24 kcal Atomic # 9 Polarization: -14.04 SS G_CDS: 2.28 Total: -11.75 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.61 kcal Total: -67.11 3.67 -63.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877384071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.230 kcal (2) G-P(sol) polarization free energy of solvation -67.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds