Wall clock time and date at job start Tue Mar 31 2020 21:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.79191 * 2 1 4 4 C 1.53244 * 109.62879 * 239.51330 * 2 1 3 5 5 N 1.46894 * 109.34163 * 186.46217 * 4 2 1 6 6 C 1.46904 * 111.00264 * 187.25609 * 5 4 2 7 7 C 1.52999 * 109.47117 * 169.99974 * 6 5 4 8 8 H 1.09002 * 109.47179 * 59.99887 * 7 6 5 9 9 O 1.42896 * 109.47267 * 299.99725 * 7 6 5 10 10 C 1.50699 * 109.46940 * 179.97438 * 7 6 5 11 11 C 1.38233 * 120.00660 * 94.99633 * 10 7 6 12 12 C 1.38220 * 120.01345 * 179.97438 * 11 10 7 13 13 C 1.38257 * 120.02923 * 0.05116 * 12 11 10 14 14 C 1.38197 * 120.01256 * 359.97394 * 13 12 11 15 15 C 1.38331 * 120.00990 * 274.72882 * 10 7 6 16 16 Cl 1.73611 * 120.01003 * 359.97318 * 15 10 7 17 17 C 1.46906 * 111.27175 * 63.10590 * 5 4 2 18 18 C 1.53244 * 109.33540 * 296.89869 * 17 5 4 19 19 H 1.08996 * 109.78656 * 173.63313 * 18 17 5 20 20 C 1.53000 * 109.62631 * 294.11628 * 18 17 5 21 21 N 1.47075 * 108.52238 * 53.82606 * 18 17 5 22 22 C 1.36938 * 120.87858 * 128.83760 * 21 18 17 23 23 H 1.07999 * 120.00036 * 206.30375 * 22 21 18 24 24 C 1.38812 * 119.99971 * 26.30020 * 22 21 18 25 25 N 1.31618 * 120.00228 * 17.43894 * 24 22 21 26 26 Si 1.86807 * 119.99937 * 197.43854 * 24 22 21 27 27 H 1.48499 * 109.46935 * 89.99942 * 26 24 22 28 28 H 1.48498 * 109.47175 * 210.00286 * 26 24 22 29 29 H 1.48504 * 109.47109 * 330.00293 * 26 24 22 30 30 H 1.09004 * 109.47361 * 180.48286 * 1 2 3 31 31 H 1.09001 * 109.47295 * 300.48705 * 1 2 3 32 32 H 1.09004 * 109.47226 * 60.48714 * 1 2 3 33 33 H 1.09001 * 109.48860 * 66.50219 * 4 2 1 34 34 H 1.09000 * 109.49463 * 306.42179 * 4 2 1 35 35 H 1.08998 * 109.46560 * 289.99682 * 6 5 4 36 36 H 1.08998 * 109.46710 * 49.99768 * 6 5 4 37 37 H 0.96702 * 114.00292 * 300.00470 * 9 7 6 38 38 H 1.07998 * 119.99238 * 0.02562 * 11 10 7 39 39 H 1.08001 * 119.98762 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.99756 * 179.97438 * 13 12 11 41 41 H 1.07997 * 120.00694 * 180.02562 * 14 13 12 42 42 H 1.08995 * 109.48949 * 56.85174 * 17 5 4 43 43 H 1.08998 * 109.49641 * 176.93739 * 17 5 4 44 44 H 1.09000 * 109.47008 * 179.03738 * 20 18 17 45 45 H 1.09004 * 109.47237 * 299.03272 * 20 18 17 46 46 H 1.08996 * 109.47327 * 59.03378 * 20 18 17 47 47 H 0.97002 * 120.00131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0447 -0.7323 -1.2438 5 7 3.5054 -0.8645 -1.1609 6 6 4.0568 -1.4062 -2.4101 7 6 5.5827 -1.2976 -2.3834 8 1 5.9726 -1.8646 -1.5381 9 8 5.9603 0.0743 -2.2516 10 6 6.1483 -1.8539 -3.6647 11 6 6.4360 -1.0069 -4.7185 12 6 6.9554 -1.5169 -5.8935 13 6 7.1864 -2.8746 -6.0160 14 6 6.8987 -3.7224 -4.9633 15 6 6.3850 -3.2115 -3.7844 16 17 6.0311 -4.2749 -2.4585 17 6 3.9016 -1.6872 -0.0102 18 6 3.4628 -0.9941 1.2842 19 1 3.6512 -1.6484 2.1353 20 6 4.2416 0.3115 1.4575 21 7 2.0240 -0.7029 1.1938 22 6 1.1672 -1.0758 2.1947 23 1 0.1255 -1.2568 1.9744 24 6 1.6375 -1.2212 3.4926 25 7 2.7887 -0.6856 3.8394 26 14 0.6366 -2.1772 4.7472 27 1 1.0312 -3.6083 4.7084 28 1 0.8908 -1.6301 6.1041 29 1 -0.8080 -2.0533 4.4261 30 1 -0.3634 -1.0277 0.0087 31 1 -0.3634 0.5214 0.8856 32 1 -0.3634 0.5063 -0.8943 33 1 1.7810 -0.1638 -2.1357 34 1 1.5923 -1.7226 -1.2962 35 1 3.7688 -2.4527 -2.5106 36 1 3.6668 -0.8392 -3.2553 37 1 5.6465 0.6395 -2.9708 38 1 6.2558 0.0537 -4.6235 39 1 7.1804 -0.8548 -6.7165 40 1 7.5918 -3.2726 -6.9345 41 1 7.0796 -4.7828 -5.0589 42 1 3.4232 -2.6642 -0.0797 43 1 4.9844 -1.8113 -0.0073 44 1 3.9154 0.8107 2.3699 45 1 5.3074 0.0927 1.5242 46 1 4.0569 0.9610 0.6019 47 1 3.1172 -0.7869 4.7465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:34 Heat of formation + Delta-G solvation = 5.932048 kcal Electronic energy + Delta-G solvation = -28376.379897 eV Core-core repulsion = 24585.862420 eV Total energy + Delta-G solvation = -3790.517477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.07875 -38.53317 -36.88177 -36.59968 -34.39763 -32.51010 -31.89355 -31.10566 -30.98774 -28.37593 -27.34641 -25.88814 -24.76247 -23.48837 -22.92035 -21.84554 -21.30286 -20.27000 -18.50445 -17.97219 -16.40277 -16.27669 -16.02632 -15.48787 -15.24395 -14.60442 -14.48350 -14.46985 -14.09034 -13.87801 -13.67668 -13.62360 -13.22031 -13.03291 -12.72433 -12.16393 -11.87618 -11.79001 -11.77092 -11.63009 -11.44437 -11.36294 -11.15119 -10.92559 -10.89889 -10.75490 -10.54216 -10.44126 -10.35647 -10.04036 -9.94723 -9.80311 -9.38692 -9.20235 -9.10157 -8.87367 -8.38084 -7.66765 -6.54632 -5.67971 -3.08605 0.85135 0.94789 1.94925 3.30196 3.42097 3.49409 3.49992 4.12681 4.38659 4.51502 4.55538 4.63553 4.76625 4.98443 5.03740 5.14361 5.26223 5.35070 5.39161 5.46946 5.56729 5.72459 5.79339 5.88190 5.91773 5.96996 6.08775 6.16532 6.18432 6.21686 6.31742 6.37409 6.43069 6.47247 6.50859 6.72917 6.96748 7.02217 7.13881 7.26178 7.34792 7.58745 7.64783 7.75862 7.82545 7.95630 8.07019 8.54432 9.32866 9.95612 10.53813 11.39222 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.003212 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.305519 B = 8715.831159 C = 9209.633481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 H 0.034 0.966 4 C 0.050 3.950 5 N -0.516 5.516 6 C 0.030 3.970 7 C 0.149 3.851 8 H 0.115 0.885 9 O -0.532 6.532 10 C -0.102 4.102 11 C -0.100 4.100 12 C -0.113 4.113 13 C -0.113 4.113 14 C -0.110 4.110 15 C -0.031 4.031 16 Cl -0.060 7.060 17 C 0.042 3.958 18 C 0.199 3.801 19 H 0.093 0.907 20 C -0.132 4.132 21 N -0.585 5.585 22 C -0.248 4.248 23 H 0.070 0.930 24 C 0.001 3.999 25 N -0.897 5.897 26 Si 0.897 3.103 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.281 1.281 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.057 0.943 34 H 0.026 0.974 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.367 0.633 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.021 0.979 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.020 0.980 46 H 0.035 0.965 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.997 -2.852 -20.456 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.051 0.949 4 C -0.080 4.080 5 N -0.240 5.240 6 C -0.099 4.099 7 C 0.089 3.911 8 H 0.132 0.868 9 O -0.336 6.336 10 C -0.104 4.104 11 C -0.119 4.119 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.128 4.128 15 C -0.058 4.058 16 Cl -0.031 7.031 17 C -0.087 4.087 18 C 0.092 3.908 19 H 0.111 0.889 20 C -0.191 4.191 21 N -0.308 5.308 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.197 4.197 25 N -0.542 5.542 26 Si 0.727 3.273 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.207 1.207 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.214 0.786 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.478 -2.702 -19.527 21.459 hybrid contribution -1.013 -1.399 0.058 1.728 sum 7.465 -4.101 -19.469 21.251 Atomic orbital electron populations 1.21803 0.96206 1.01249 1.00277 1.20438 0.92067 0.94291 0.86623 0.94870 1.22672 0.86848 0.98997 0.99438 1.61869 1.10592 1.50325 1.01201 1.22698 0.94064 0.98671 0.94433 1.20908 0.93365 0.83542 0.93306 0.86752 1.86723 1.78488 1.17490 1.50896 1.20635 0.99580 0.92123 0.98037 1.20911 0.98809 0.99897 0.92236 1.21225 0.98681 0.95512 0.97708 1.21119 1.00042 0.93478 0.98510 1.21068 0.99290 1.00707 0.91765 1.20821 1.03305 0.90868 0.90762 1.98405 1.93344 1.64888 1.46489 1.22884 0.98642 0.94227 0.92938 1.20392 0.82756 0.95341 0.92284 0.88885 1.21908 0.96544 0.99332 1.01271 1.44296 1.03583 1.65073 1.17896 1.19200 0.92807 1.39124 0.86594 0.91237 1.24980 0.97677 1.00393 0.96662 1.70026 1.21094 1.45109 1.17934 0.86373 0.79701 0.80052 0.81127 1.21760 1.21925 1.20677 0.93018 0.91854 0.94334 0.92430 0.95622 0.94440 0.91222 0.78623 0.84936 0.85318 0.85174 0.84927 0.96115 0.92188 0.91163 0.96128 0.94619 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.93 37.16 0.29 -2.30 16 2 C 0.17 3.64 3.26 -67.49 -0.22 3.42 16 3 H 0.03 0.75 7.63 -51.93 -0.40 0.36 16 4 C 0.05 0.91 4.91 -3.70 -0.02 0.89 16 5 N -0.52 -9.20 3.98 -234.31 -0.93 -10.13 16 6 C 0.03 0.44 4.61 -3.82 -0.02 0.42 16 7 C 0.15 2.02 2.60 -27.88 -0.07 1.94 16 8 H 0.12 1.78 5.37 -51.93 -0.28 1.50 16 9 O -0.53 -7.40 12.85 -35.23 -0.45 -7.85 16 10 C -0.10 -1.17 5.07 -104.59 -0.53 -1.70 16 11 C -0.10 -0.93 9.30 -39.59 -0.37 -1.30 16 12 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 13 C -0.11 -0.88 10.05 -39.59 -0.40 -1.28 16 14 C -0.11 -1.02 9.83 -39.55 -0.39 -1.41 16 15 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 16 Cl -0.06 -0.75 27.20 -51.86 -1.41 -2.16 16 17 C 0.04 0.85 4.85 -3.69 -0.02 0.83 16 18 C 0.20 4.76 2.36 -67.49 -0.16 4.60 16 19 H 0.09 2.54 6.10 -51.93 -0.32 2.22 16 20 C -0.13 -3.11 8.96 37.16 0.33 -2.78 16 21 N -0.59 -14.46 2.73 -157.01 -0.43 -14.89 16 22 C -0.25 -6.65 8.73 -15.06 -0.13 -6.78 16 23 H 0.07 1.83 6.16 -52.49 -0.32 1.51 16 24 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 25 N -0.90 -25.50 9.79 55.49 0.54 -24.96 16 26 Si 0.90 21.77 29.59 -169.99 -5.03 16.75 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.05 0.99 7.54 -51.93 -0.39 0.60 16 31 H 0.06 1.28 7.57 -51.93 -0.39 0.89 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.57 7.92 -51.93 -0.41 0.15 16 36 H 0.07 0.90 7.97 -51.93 -0.41 0.48 16 37 H 0.37 3.71 7.33 45.56 0.33 4.04 16 38 H 0.13 0.96 6.41 -52.49 -0.34 0.63 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.17 6.16 -51.93 -0.32 0.85 16 44 H 0.07 1.86 6.91 -51.93 -0.36 1.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.03 0.82 7.08 -51.93 -0.37 0.45 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -30.08 374.40 -10.98 -41.06 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.48 Total: 3.91 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.43 Total: -7.36 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.82 Total: -49.98 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.45 Total: -7.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.41 Total: -2.16 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.08 -10.98 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.993 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds