Wall clock time and date at job start Tue Mar 31 2020 21:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.79191 * 2 1 4 4 C 1.53244 * 109.62879 * 239.51330 * 2 1 3 5 5 N 1.46894 * 109.34163 * 186.46217 * 4 2 1 6 6 C 1.46904 * 111.00264 * 187.25609 * 5 4 2 7 7 C 1.52999 * 109.47117 * 169.99974 * 6 5 4 8 8 H 1.09002 * 109.47179 * 59.99887 * 7 6 5 9 9 O 1.42896 * 109.47267 * 299.99725 * 7 6 5 10 10 C 1.50699 * 109.46940 * 179.97438 * 7 6 5 11 11 C 1.38233 * 120.00660 * 94.99633 * 10 7 6 12 12 C 1.38220 * 120.01345 * 179.97438 * 11 10 7 13 13 C 1.38257 * 120.02923 * 0.05116 * 12 11 10 14 14 C 1.38197 * 120.01256 * 359.97394 * 13 12 11 15 15 C 1.38331 * 120.00990 * 274.72882 * 10 7 6 16 16 Cl 1.73611 * 120.01003 * 359.97318 * 15 10 7 17 17 C 1.46906 * 111.27175 * 63.10590 * 5 4 2 18 18 C 1.53244 * 109.33540 * 296.89869 * 17 5 4 19 19 H 1.08996 * 109.78656 * 173.63313 * 18 17 5 20 20 C 1.53000 * 109.62631 * 294.11628 * 18 17 5 21 21 N 1.47075 * 108.52238 * 53.82606 * 18 17 5 22 22 C 1.36938 * 120.87858 * 128.83760 * 21 18 17 23 23 H 1.07999 * 120.00036 * 206.30375 * 22 21 18 24 24 C 1.38812 * 119.99971 * 26.30020 * 22 21 18 25 25 N 1.31618 * 120.00228 * 17.43894 * 24 22 21 26 26 Si 1.86807 * 119.99937 * 197.43854 * 24 22 21 27 27 H 1.48499 * 109.46935 * 89.99942 * 26 24 22 28 28 H 1.48498 * 109.47175 * 210.00286 * 26 24 22 29 29 H 1.48504 * 109.47109 * 330.00293 * 26 24 22 30 30 H 1.09004 * 109.47361 * 180.48286 * 1 2 3 31 31 H 1.09001 * 109.47295 * 300.48705 * 1 2 3 32 32 H 1.09004 * 109.47226 * 60.48714 * 1 2 3 33 33 H 1.09001 * 109.48860 * 66.50219 * 4 2 1 34 34 H 1.09000 * 109.49463 * 306.42179 * 4 2 1 35 35 H 1.08998 * 109.46560 * 289.99682 * 6 5 4 36 36 H 1.08998 * 109.46710 * 49.99768 * 6 5 4 37 37 H 0.96702 * 114.00292 * 300.00470 * 9 7 6 38 38 H 1.07998 * 119.99238 * 0.02562 * 11 10 7 39 39 H 1.08001 * 119.98762 * 180.02562 * 12 11 10 40 40 H 1.08001 * 119.99756 * 179.97438 * 13 12 11 41 41 H 1.07997 * 120.00694 * 180.02562 * 14 13 12 42 42 H 1.08995 * 109.48949 * 56.85174 * 17 5 4 43 43 H 1.08998 * 109.49641 * 176.93739 * 17 5 4 44 44 H 1.09000 * 109.47008 * 179.03738 * 20 18 17 45 45 H 1.09004 * 109.47237 * 299.03272 * 20 18 17 46 46 H 1.08996 * 109.47327 * 59.03378 * 20 18 17 47 47 H 0.97002 * 120.00131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0447 -0.7323 -1.2438 5 7 3.5054 -0.8645 -1.1609 6 6 4.0568 -1.4062 -2.4101 7 6 5.5827 -1.2976 -2.3834 8 1 5.9726 -1.8646 -1.5381 9 8 5.9603 0.0743 -2.2516 10 6 6.1483 -1.8539 -3.6647 11 6 6.4360 -1.0069 -4.7185 12 6 6.9554 -1.5169 -5.8935 13 6 7.1864 -2.8746 -6.0160 14 6 6.8987 -3.7224 -4.9633 15 6 6.3850 -3.2115 -3.7844 16 17 6.0311 -4.2749 -2.4585 17 6 3.9016 -1.6872 -0.0102 18 6 3.4628 -0.9941 1.2842 19 1 3.6512 -1.6484 2.1353 20 6 4.2416 0.3115 1.4575 21 7 2.0240 -0.7029 1.1938 22 6 1.1672 -1.0758 2.1947 23 1 0.1255 -1.2568 1.9744 24 6 1.6375 -1.2212 3.4926 25 7 2.7887 -0.6856 3.8394 26 14 0.6366 -2.1772 4.7472 27 1 1.0312 -3.6083 4.7084 28 1 0.8908 -1.6301 6.1041 29 1 -0.8080 -2.0533 4.4261 30 1 -0.3634 -1.0277 0.0087 31 1 -0.3634 0.5214 0.8856 32 1 -0.3634 0.5063 -0.8943 33 1 1.7810 -0.1638 -2.1357 34 1 1.5923 -1.7226 -1.2962 35 1 3.7688 -2.4527 -2.5106 36 1 3.6668 -0.8392 -3.2553 37 1 5.6465 0.6395 -2.9708 38 1 6.2558 0.0537 -4.6235 39 1 7.1804 -0.8548 -6.7165 40 1 7.5918 -3.2726 -6.9345 41 1 7.0796 -4.7828 -5.0589 42 1 3.4232 -2.6642 -0.0797 43 1 4.9844 -1.8113 -0.0073 44 1 3.9154 0.8107 2.3699 45 1 5.3074 0.0927 1.5242 46 1 4.0569 0.9610 0.6019 47 1 3.1172 -0.7869 4.7465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878772127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:33 Heat of formation + Delta-G solvation = -12.628653 kcal Electronic energy + Delta-G solvation = -28377.184749 eV Core-core repulsion = 24585.862420 eV Total energy + Delta-G solvation = -3791.322330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.96527 -39.97167 -38.01208 -37.44765 -35.98200 -34.25365 -33.23279 -32.52033 -31.68578 -29.93507 -28.82046 -27.53355 -26.34171 -25.03481 -23.61717 -23.20366 -22.58293 -21.64673 -20.34892 -18.80113 -18.01031 -17.35166 -17.15383 -16.86530 -16.44688 -16.09148 -15.79494 -15.66385 -15.48622 -15.16297 -14.92850 -14.70615 -14.63007 -14.41774 -14.18316 -13.58971 -13.27392 -13.02313 -12.92938 -12.85242 -12.81436 -12.71768 -12.56727 -12.46787 -12.29841 -12.26410 -12.18574 -12.02911 -11.82916 -11.76054 -11.61818 -11.27322 -11.09936 -10.88624 -10.43631 -9.88466 -9.66438 -9.15835 -8.53027 -7.75907 -5.18053 0.14552 0.27757 1.14446 1.46447 1.48547 1.55796 2.54949 2.61230 2.93323 3.36955 3.47463 3.62131 3.70586 3.82463 4.00917 4.03252 4.19389 4.26248 4.35737 4.40268 4.43184 4.52971 4.57978 4.61673 4.66371 4.70395 4.78127 4.85268 4.87544 4.90291 4.94818 5.01859 5.11949 5.26273 5.27765 5.35781 5.41484 5.44790 5.46602 5.57305 5.72684 5.79126 5.85890 6.01079 6.21538 6.29532 6.50027 6.88753 7.26204 7.97771 8.51049 9.29043 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018437 B = 0.003212 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.305519 B = 8715.831159 C = 9209.633481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.165 3.835 3 H 0.020 0.980 4 C 0.058 3.942 5 N -0.519 5.519 6 C 0.036 3.964 7 C 0.159 3.841 8 H 0.087 0.913 9 O -0.549 6.549 10 C -0.120 4.120 11 C -0.103 4.103 12 C -0.109 4.109 13 C -0.107 4.107 14 C -0.118 4.118 15 C -0.049 4.049 16 Cl -0.084 7.084 17 C 0.061 3.939 18 C 0.198 3.802 19 H 0.054 0.946 20 C -0.110 4.110 21 N -0.601 5.601 22 C -0.250 4.250 23 H 0.073 0.927 24 C -0.051 4.051 25 N -0.923 5.923 26 Si 0.955 3.045 27 H -0.293 1.293 28 H -0.299 1.299 29 H -0.271 1.271 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.017 0.983 35 H 0.032 0.968 36 H 0.095 0.905 37 H 0.383 0.617 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.006 0.994 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.026 0.974 46 H 0.040 0.960 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.003 -2.489 -24.149 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.059 3.941 3 H 0.038 0.962 4 C -0.071 4.071 5 N -0.243 5.243 6 C -0.092 4.092 7 C 0.099 3.901 8 H 0.105 0.895 9 O -0.356 6.356 10 C -0.121 4.121 11 C -0.121 4.121 12 C -0.127 4.127 13 C -0.125 4.125 14 C -0.136 4.136 15 C -0.076 4.076 16 Cl -0.055 7.055 17 C -0.068 4.068 18 C 0.091 3.909 19 H 0.072 0.928 20 C -0.169 4.169 21 N -0.325 5.325 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.246 4.246 25 N -0.569 5.569 26 Si 0.785 3.215 27 H -0.221 1.221 28 H -0.226 1.226 29 H -0.196 1.196 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.113 0.887 37 H 0.233 0.767 38 H 0.169 0.831 39 H 0.178 0.822 40 H 0.179 0.821 41 H 0.162 0.838 42 H 0.024 0.976 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.059 0.941 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.468 -2.332 -23.264 24.867 hybrid contribution -0.967 -1.453 1.062 2.043 sum 7.502 -3.785 -22.202 23.739 Atomic orbital electron populations 1.21705 0.94554 1.01085 1.01245 1.20660 0.93562 0.93532 0.86366 0.96208 1.22555 0.86854 0.98593 0.99095 1.61819 1.10599 1.49984 1.01883 1.22743 0.94845 0.98513 0.93092 1.20593 0.92447 0.83321 0.93777 0.89509 1.86684 1.78783 1.17903 1.52220 1.20469 1.01401 0.92442 0.97818 1.21200 0.98328 1.00588 0.92006 1.21630 0.97141 0.96021 0.97874 1.21540 0.98576 0.93439 0.98911 1.21320 0.99068 1.01794 0.91453 1.21024 1.04839 0.90759 0.90958 1.98394 1.93623 1.65611 1.47856 1.22491 0.98669 0.93225 0.92460 1.20237 0.82997 0.94813 0.92864 0.92843 1.21656 0.96742 0.98992 0.99541 1.44531 1.03598 1.65709 1.18624 1.19486 0.93243 1.38154 0.87181 0.90975 1.25644 0.98865 1.01717 0.98409 1.70192 1.22532 1.46508 1.17688 0.85443 0.78954 0.78392 0.78708 1.22055 1.22556 1.19565 0.93597 0.93877 0.90421 0.88892 0.96467 0.95006 0.88710 0.76710 0.83069 0.82206 0.82134 0.83790 0.97573 0.91677 0.94542 0.95458 0.94137 0.94662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.93 71.98 0.57 -4.09 16 2 C 0.16 6.82 3.26 44.96 0.15 6.96 16 3 H 0.02 0.89 7.63 -2.39 -0.02 0.87 16 4 C 0.06 2.01 4.91 86.39 0.42 2.43 16 5 N -0.52 -17.94 3.98 -895.24 -3.56 -21.51 16 6 C 0.04 0.99 4.61 86.30 0.40 1.38 16 7 C 0.16 4.14 2.60 29.85 0.08 4.21 16 8 H 0.09 2.74 5.37 -2.39 -0.01 2.73 16 9 O -0.55 -14.38 12.85 -148.98 -1.92 -16.30 16 10 C -0.12 -2.54 5.07 -19.84 -0.10 -2.64 16 11 C -0.10 -1.57 9.30 22.26 0.21 -1.37 16 12 C -0.11 -1.24 10.05 22.27 0.22 -1.01 16 13 C -0.11 -1.25 10.05 22.26 0.22 -1.02 16 14 C -0.12 -1.93 9.83 22.29 0.22 -1.71 16 15 C -0.05 -1.07 6.32 22.32 0.14 -0.93 16 16 Cl -0.08 -2.11 27.20 -2.72 -0.07 -2.18 16 17 C 0.06 2.51 4.85 86.38 0.42 2.93 16 18 C 0.20 9.78 2.36 44.96 0.11 9.89 16 19 H 0.05 3.07 6.10 -2.39 -0.01 3.06 16 20 C -0.11 -5.36 8.96 71.98 0.64 -4.72 16 21 N -0.60 -30.24 2.73 -650.66 -1.78 -32.02 16 22 C -0.25 -13.71 8.73 84.03 0.73 -12.97 16 23 H 0.07 3.84 6.16 -2.91 -0.02 3.82 16 24 C -0.05 -2.87 4.93 84.86 0.42 -2.45 16 25 N -0.92 -54.67 9.79 21.65 0.21 -54.46 16 26 Si 0.96 45.95 29.59 68.60 2.03 47.98 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 29 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 30 H 0.04 1.71 7.54 -2.38 -0.02 1.69 16 31 H 0.04 1.72 7.57 -2.39 -0.02 1.70 16 32 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.09 2.58 7.99 -2.39 -0.02 2.56 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.03 0.92 7.92 -2.39 -0.02 0.90 16 36 H 0.09 2.12 7.97 -2.39 -0.02 2.10 16 37 H 0.38 6.72 7.33 -74.06 -0.54 6.18 16 38 H 0.15 1.62 6.41 -2.91 -0.02 1.61 16 39 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 40 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 42 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.06 2.60 6.16 -2.39 -0.01 2.59 16 44 H 0.04 1.99 6.91 -2.39 -0.02 1.98 16 45 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.04 1.88 7.08 -2.39 -0.02 1.86 16 47 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -67.85 374.40 0.20 -67.65 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.44 Total: 15.95 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.85 Total: -5.11 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.13 Total: -107.99 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -1.92 Total: -16.30 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.07 Total: -2.18 kcal Total: -67.85 0.20 -67.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.020 kcal (2) G-P(sol) polarization free energy of solvation -67.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds