Wall clock time and date at job start Tue Mar 31 2020 21:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.78669 * 2 1 4 4 C 1.53238 * 109.62736 * 239.51091 * 2 1 3 5 5 N 1.46896 * 109.33811 * 186.45801 * 4 2 1 6 6 C 1.46900 * 111.00008 * 187.25552 * 5 4 2 7 7 C 1.52998 * 109.47122 * 51.58548 * 6 5 4 8 8 H 1.08999 * 109.47349 * 295.79504 * 7 6 5 9 9 O 1.42895 * 109.46954 * 55.79677 * 7 6 5 10 10 C 1.50705 * 109.47306 * 175.79541 * 7 6 5 11 11 C 1.38235 * 119.98551 * 279.73054 * 10 7 6 12 12 C 1.38221 * 120.01035 * 179.72540 * 11 10 7 13 13 C 1.38349 * 119.98550 * 0.54430 * 12 11 10 14 14 Cl 1.73598 * 120.01040 * 179.74830 * 13 12 11 15 15 C 1.38350 * 119.97432 * 359.72676 * 13 12 11 16 16 C 1.38213 * 119.98695 * 359.97438 * 15 13 12 17 17 C 1.46902 * 111.26865 * 63.10970 * 5 4 2 18 18 C 1.53236 * 109.34066 * 296.89552 * 17 5 4 19 19 H 1.09006 * 109.62479 * 293.92288 * 18 17 5 20 20 C 1.52997 * 109.63266 * 173.53566 * 18 17 5 21 21 N 1.47078 * 109.62518 * 120.48624 * 2 1 3 22 22 C 1.36935 * 120.88662 * 350.86947 * 21 2 1 23 23 H 1.07999 * 120.00310 * 128.43810 * 22 21 2 24 24 C 1.38813 * 119.99784 * 308.44819 * 22 21 2 25 25 N 1.31617 * 120.00306 * 156.35725 * 24 22 21 26 26 Si 1.86803 * 120.00049 * 336.34871 * 24 22 21 27 27 H 1.48508 * 109.46716 * 87.06333 * 26 24 22 28 28 H 1.48499 * 109.47365 * 207.06167 * 26 24 22 29 29 H 1.48497 * 109.47069 * 327.06757 * 26 24 22 30 30 H 1.09003 * 109.47370 * 186.15926 * 1 2 3 31 31 H 1.08996 * 109.47128 * 306.16079 * 1 2 3 32 32 H 1.08994 * 109.46972 * 66.15758 * 1 2 3 33 33 H 1.09006 * 109.48992 * 66.50424 * 4 2 1 34 34 H 1.08992 * 109.49563 * 306.42511 * 4 2 1 35 35 H 1.09000 * 109.47355 * 171.58930 * 6 5 4 36 36 H 1.09007 * 109.47250 * 291.58696 * 6 5 4 37 37 H 0.96700 * 114.00578 * 59.99911 * 9 7 6 38 38 H 1.08005 * 119.99774 * 359.97438 * 11 10 7 39 39 H 1.08001 * 120.00628 * 180.26864 * 12 11 10 40 40 H 1.08000 * 120.00770 * 180.02562 * 15 13 12 41 41 H 1.08002 * 119.99229 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.49790 * 176.93007 * 17 5 4 43 43 H 1.09002 * 109.51357 * 56.86657 * 17 5 4 44 44 H 1.09008 * 109.46910 * 59.99958 * 20 18 17 45 45 H 1.08991 * 109.47327 * 300.00292 * 20 18 17 46 46 H 1.08997 * 109.47097 * 179.97438 * 20 18 17 47 47 H 0.97002 * 120.00285 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 -1.2438 5 7 3.5054 -0.8644 -1.1608 6 6 4.0568 -1.4062 -2.4100 7 6 3.5405 -0.5856 -3.5936 8 1 2.4589 -0.6975 -3.6691 9 8 3.8642 0.7920 -3.3952 10 6 4.1861 -1.0754 -4.8642 11 6 5.4659 -0.6674 -5.1906 12 6 6.0606 -1.1208 -6.3531 13 6 5.3706 -1.9741 -7.1955 14 17 6.1145 -2.5387 -8.6588 15 6 4.0876 -2.3776 -6.8710 16 6 3.4963 -1.9285 -5.7053 17 6 3.9016 -1.6871 -0.0101 18 6 3.4629 -0.9941 1.2843 19 1 4.0202 -0.0656 1.4095 20 6 3.7266 -1.9165 2.4761 21 7 2.0240 -0.7028 1.1938 22 6 1.1672 -1.0757 2.1948 23 1 1.1650 -2.0950 2.5520 24 6 0.3014 -0.1437 2.7504 25 7 -0.8040 -0.5434 3.3425 26 14 0.7053 1.6778 2.6578 27 1 0.1891 2.2349 1.3817 28 1 0.0702 2.3842 3.7992 29 1 2.1775 1.8621 2.7188 30 1 -0.3634 -1.0217 0.1103 31 1 -0.3633 0.6064 0.8297 32 1 -0.3633 0.4154 -0.9399 33 1 1.7810 -0.1639 -2.1357 34 1 1.5923 -1.7225 -1.2961 35 1 5.1451 -1.3547 -2.3793 36 1 3.7454 -2.4445 -2.5244 37 1 4.8123 0.9664 -3.3191 38 1 6.0027 0.0026 -4.5353 39 1 7.0622 -0.8054 -6.6059 40 1 3.5486 -3.0441 -7.5280 41 1 2.4946 -2.2431 -5.4521 42 1 4.9845 -1.8113 -0.0072 43 1 3.4237 -2.6643 -0.0794 44 1 4.7912 -2.1445 2.5305 45 1 3.1630 -2.8410 2.3517 46 1 3.4141 -1.4208 3.3952 47 1 -1.4089 0.1079 3.7310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:46 Heat of formation + Delta-G solvation = 7.978788 kcal Electronic energy + Delta-G solvation = -27857.892231 eV Core-core repulsion = 24067.463507 eV Total energy + Delta-G solvation = -3790.428724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.19013 -38.76909 -37.30905 -36.49592 -34.66230 -32.92506 -31.93906 -31.50666 -31.33446 -28.56225 -27.49119 -26.15519 -25.12850 -23.60376 -23.15555 -21.75840 -20.91592 -20.25127 -19.24874 -18.02316 -16.66539 -16.53583 -16.18874 -15.65718 -15.30830 -14.83638 -14.74068 -14.65300 -14.34156 -14.00744 -13.86018 -13.67465 -13.36395 -13.29958 -12.59658 -12.57672 -12.30735 -12.12315 -11.96712 -11.91783 -11.77602 -11.55215 -11.33936 -11.18267 -11.04776 -10.82432 -10.78965 -10.46265 -10.26647 -10.14136 -10.02485 -9.87167 -9.65297 -9.42924 -9.35472 -8.91989 -8.34502 -7.92885 -6.44066 -6.00294 -3.51909 0.72213 0.90392 1.75955 3.19885 3.39684 3.50820 3.61266 4.00666 4.31892 4.38317 4.48948 4.56358 4.63088 4.83089 4.88432 4.96118 5.04696 5.11378 5.27941 5.29206 5.50374 5.55925 5.65507 5.74961 5.77555 5.81929 5.83523 5.95033 6.03467 6.08373 6.17579 6.23600 6.34012 6.34633 6.38288 6.48236 6.49798 6.57619 6.75704 7.01813 7.08741 7.18843 7.37690 7.45140 7.55291 7.62364 8.13360 8.54435 9.07342 9.73345 10.30406 11.13321 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.002473 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.955675 B =11317.444781 C =11588.182610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.173 3.827 3 H 0.032 0.968 4 C 0.045 3.955 5 N -0.525 5.525 6 C 0.029 3.971 7 C 0.146 3.854 8 H 0.111 0.889 9 O -0.535 6.535 10 C -0.105 4.105 11 C -0.098 4.098 12 C -0.107 4.107 13 C -0.037 4.037 14 Cl -0.074 7.074 15 C -0.108 4.108 16 C -0.097 4.097 17 C 0.049 3.951 18 C 0.169 3.831 19 H 0.033 0.967 20 C -0.131 4.131 21 N -0.598 5.598 22 C -0.270 4.270 23 H 0.070 0.930 24 C 0.056 3.944 25 N -0.893 5.893 26 Si 0.869 3.131 27 H -0.276 1.276 28 H -0.303 1.303 29 H -0.272 1.272 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.371 0.629 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.061 0.939 43 H 0.030 0.970 44 H 0.037 0.963 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.993 -2.784 -19.900 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.067 3.933 3 H 0.049 0.951 4 C -0.084 4.084 5 N -0.249 5.249 6 C -0.100 4.100 7 C 0.087 3.913 8 H 0.128 0.872 9 O -0.340 6.340 10 C -0.106 4.106 11 C -0.116 4.116 12 C -0.126 4.126 13 C -0.064 4.064 14 Cl -0.045 7.045 15 C -0.127 4.127 16 C -0.115 4.115 17 C -0.081 4.081 18 C 0.063 3.937 19 H 0.051 0.949 20 C -0.189 4.189 21 N -0.325 5.325 22 C -0.398 4.398 23 H 0.088 0.912 24 C -0.146 4.146 25 N -0.533 5.533 26 Si 0.697 3.303 27 H -0.203 1.203 28 H -0.231 1.231 29 H -0.197 1.197 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.219 0.781 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.438 -2.283 -19.861 23.546 hybrid contribution 0.528 0.019 -0.341 0.629 sum 12.967 -2.263 -20.202 24.112 Atomic orbital electron populations 1.22044 0.94903 1.03312 0.99809 1.20651 0.93283 0.93968 0.85396 0.95069 1.22750 0.86266 0.99349 1.00012 1.61905 1.11830 1.49963 1.01209 1.22769 1.00095 0.96532 0.90570 1.20931 0.99666 0.82174 0.88560 0.87172 1.86681 1.29192 1.23096 1.95033 1.20803 0.94899 0.97315 0.97564 1.20885 0.94540 0.99660 0.96550 1.21025 1.00377 0.97127 0.94082 1.20955 0.94730 1.00595 0.90116 1.98374 1.82387 1.88347 1.35424 1.21060 0.93480 1.00465 0.97657 1.21025 1.00266 0.96890 0.93324 1.22676 0.98657 0.94717 0.92012 1.20617 0.86613 0.95339 0.91105 0.94934 1.21710 0.98172 0.99912 0.99113 1.44511 1.01575 1.68714 1.17670 1.18400 1.14353 0.94466 1.12611 0.91243 1.25817 0.95966 0.97702 0.95103 1.69913 1.09658 1.34544 1.39173 0.87282 0.79176 0.87356 0.76450 1.20315 1.23064 1.19711 0.91534 0.91167 0.94880 0.91251 0.95195 0.90797 0.94426 0.78138 0.85006 0.84837 0.84809 0.84803 0.92079 0.95129 0.94433 0.92796 0.91525 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.71 37.16 0.29 -2.88 16 2 C 0.17 3.75 2.46 -67.49 -0.17 3.58 16 3 H 0.03 0.73 7.43 -51.93 -0.39 0.35 16 4 C 0.05 0.81 4.51 -3.70 -0.02 0.79 16 5 N -0.53 -8.45 4.52 -234.32 -1.06 -9.51 16 6 C 0.03 0.36 4.79 -3.83 -0.02 0.34 16 7 C 0.15 1.62 2.55 -27.88 -0.07 1.55 16 8 H 0.11 1.31 6.29 -51.93 -0.33 0.98 16 9 O -0.54 -6.54 12.89 -35.23 -0.45 -7.00 16 10 C -0.10 -0.99 4.97 -104.62 -0.52 -1.51 16 11 C -0.10 -0.82 9.32 -39.59 -0.37 -1.19 16 12 C -0.11 -0.88 9.83 -39.55 -0.39 -1.27 16 13 C -0.04 -0.33 6.32 -39.50 -0.25 -0.58 16 14 Cl -0.07 -0.62 28.96 -51.86 -1.50 -2.12 16 15 C -0.11 -0.92 9.83 -39.55 -0.39 -1.31 16 16 C -0.10 -0.86 9.67 -39.59 -0.38 -1.25 16 17 C 0.05 0.82 4.91 -3.70 -0.02 0.80 16 18 C 0.17 3.41 3.66 -67.49 -0.25 3.16 16 19 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 20 C -0.13 -2.46 8.17 37.16 0.30 -2.16 16 21 N -0.60 -13.96 2.29 -157.00 -0.36 -14.31 16 22 C -0.27 -7.20 7.30 -15.06 -0.11 -7.31 16 23 H 0.07 2.03 7.25 -52.49 -0.38 1.64 16 24 C 0.06 1.56 3.84 -17.43 -0.07 1.49 16 25 N -0.89 -26.17 13.97 55.49 0.78 -25.40 16 26 Si 0.87 22.14 24.78 -169.99 -4.21 17.92 16 27 H -0.28 -6.84 6.29 56.52 0.36 -6.48 16 28 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 29 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.07 1.56 7.74 -51.93 -0.40 1.15 16 31 H 0.07 1.73 3.19 -51.93 -0.17 1.56 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.14 5.80 -51.93 -0.30 0.84 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.37 3.33 7.50 45.56 0.34 3.67 16 38 H 0.13 0.84 6.77 -52.48 -0.36 0.48 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.13 1.02 8.04 -52.49 -0.42 0.60 16 42 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 45 H 0.05 1.05 7.55 -51.93 -0.39 0.65 16 46 H 0.07 1.37 7.69 -51.93 -0.40 0.97 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -30.20 372.54 -10.22 -40.41 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.60 Total: 2.13 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.42 Total: -7.74 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.64 Total: -49.22 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.45 Total: -7.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.21 Total: 17.92 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.20 -10.22 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.391 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds