Wall clock time and date at job start Tue Mar 31 2020 21:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.78669 * 2 1 4 4 C 1.53238 * 109.62736 * 239.51091 * 2 1 3 5 5 N 1.46896 * 109.33811 * 186.45801 * 4 2 1 6 6 C 1.46900 * 111.00008 * 187.25552 * 5 4 2 7 7 C 1.52998 * 109.47122 * 51.58548 * 6 5 4 8 8 H 1.08999 * 109.47349 * 295.79504 * 7 6 5 9 9 O 1.42895 * 109.46954 * 55.79677 * 7 6 5 10 10 C 1.50705 * 109.47306 * 175.79541 * 7 6 5 11 11 C 1.38235 * 119.98551 * 279.73054 * 10 7 6 12 12 C 1.38221 * 120.01035 * 179.72540 * 11 10 7 13 13 C 1.38349 * 119.98550 * 0.54430 * 12 11 10 14 14 Cl 1.73598 * 120.01040 * 179.74830 * 13 12 11 15 15 C 1.38350 * 119.97432 * 359.72676 * 13 12 11 16 16 C 1.38213 * 119.98695 * 359.97438 * 15 13 12 17 17 C 1.46902 * 111.26865 * 63.10970 * 5 4 2 18 18 C 1.53236 * 109.34066 * 296.89552 * 17 5 4 19 19 H 1.09006 * 109.62479 * 293.92288 * 18 17 5 20 20 C 1.52997 * 109.63266 * 173.53566 * 18 17 5 21 21 N 1.47078 * 109.62518 * 120.48624 * 2 1 3 22 22 C 1.36935 * 120.88662 * 350.86947 * 21 2 1 23 23 H 1.07999 * 120.00310 * 128.43810 * 22 21 2 24 24 C 1.38813 * 119.99784 * 308.44819 * 22 21 2 25 25 N 1.31617 * 120.00306 * 156.35725 * 24 22 21 26 26 Si 1.86803 * 120.00049 * 336.34871 * 24 22 21 27 27 H 1.48508 * 109.46716 * 87.06333 * 26 24 22 28 28 H 1.48499 * 109.47365 * 207.06167 * 26 24 22 29 29 H 1.48497 * 109.47069 * 327.06757 * 26 24 22 30 30 H 1.09003 * 109.47370 * 186.15926 * 1 2 3 31 31 H 1.08996 * 109.47128 * 306.16079 * 1 2 3 32 32 H 1.08994 * 109.46972 * 66.15758 * 1 2 3 33 33 H 1.09006 * 109.48992 * 66.50424 * 4 2 1 34 34 H 1.08992 * 109.49563 * 306.42511 * 4 2 1 35 35 H 1.09000 * 109.47355 * 171.58930 * 6 5 4 36 36 H 1.09007 * 109.47250 * 291.58696 * 6 5 4 37 37 H 0.96700 * 114.00578 * 59.99911 * 9 7 6 38 38 H 1.08005 * 119.99774 * 359.97438 * 11 10 7 39 39 H 1.08001 * 120.00628 * 180.26864 * 12 11 10 40 40 H 1.08000 * 120.00770 * 180.02562 * 15 13 12 41 41 H 1.08002 * 119.99229 * 179.97438 * 16 15 13 42 42 H 1.09001 * 109.49790 * 176.93007 * 17 5 4 43 43 H 1.09002 * 109.51357 * 56.86657 * 17 5 4 44 44 H 1.09008 * 109.46910 * 59.99958 * 20 18 17 45 45 H 1.08991 * 109.47327 * 300.00292 * 20 18 17 46 46 H 1.08997 * 109.47097 * 179.97438 * 20 18 17 47 47 H 0.97002 * 120.00285 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 -1.2438 5 7 3.5054 -0.8644 -1.1608 6 6 4.0568 -1.4062 -2.4100 7 6 3.5405 -0.5856 -3.5936 8 1 2.4589 -0.6975 -3.6691 9 8 3.8642 0.7920 -3.3952 10 6 4.1861 -1.0754 -4.8642 11 6 5.4659 -0.6674 -5.1906 12 6 6.0606 -1.1208 -6.3531 13 6 5.3706 -1.9741 -7.1955 14 17 6.1145 -2.5387 -8.6588 15 6 4.0876 -2.3776 -6.8710 16 6 3.4963 -1.9285 -5.7053 17 6 3.9016 -1.6871 -0.0101 18 6 3.4629 -0.9941 1.2843 19 1 4.0202 -0.0656 1.4095 20 6 3.7266 -1.9165 2.4761 21 7 2.0240 -0.7028 1.1938 22 6 1.1672 -1.0757 2.1948 23 1 1.1650 -2.0950 2.5520 24 6 0.3014 -0.1437 2.7504 25 7 -0.8040 -0.5434 3.3425 26 14 0.7053 1.6778 2.6578 27 1 0.1891 2.2349 1.3817 28 1 0.0702 2.3842 3.7992 29 1 2.1775 1.8621 2.7188 30 1 -0.3634 -1.0217 0.1103 31 1 -0.3633 0.6064 0.8297 32 1 -0.3633 0.4154 -0.9399 33 1 1.7810 -0.1639 -2.1357 34 1 1.5923 -1.7225 -1.2961 35 1 5.1451 -1.3547 -2.3793 36 1 3.7454 -2.4445 -2.5244 37 1 4.8123 0.9664 -3.3191 38 1 6.0027 0.0026 -4.5353 39 1 7.0622 -0.8054 -6.6059 40 1 3.5486 -3.0441 -7.5280 41 1 2.4946 -2.2431 -5.4521 42 1 4.9845 -1.8113 -0.0072 43 1 3.4237 -2.6643 -0.0794 44 1 4.7912 -2.1445 2.5305 45 1 3.1630 -2.8410 2.3517 46 1 3.4141 -1.4208 3.3952 47 1 -1.4089 0.1079 3.7310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878772170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:45 Heat of formation + Delta-G solvation = -11.973070 kcal Electronic energy + Delta-G solvation = -27858.757409 eV Core-core repulsion = 24067.463507 eV Total energy + Delta-G solvation = -3791.293901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.99564 -40.05209 -38.26315 -37.25254 -36.10461 -34.53412 -33.63690 -32.50875 -32.00069 -30.01642 -28.85158 -27.67990 -26.62513 -24.89830 -23.82740 -22.80426 -22.34266 -21.50880 -21.01645 -18.73749 -18.41809 -17.45254 -17.17912 -16.92206 -16.55490 -16.47056 -15.86918 -15.78372 -15.56513 -15.07475 -14.89803 -14.59749 -14.55349 -14.41865 -14.41355 -14.01948 -13.89763 -13.39159 -13.26552 -12.93796 -12.81658 -12.71796 -12.55100 -12.46341 -12.39489 -12.22824 -12.03809 -11.92412 -11.81159 -11.76895 -11.63324 -11.46285 -11.22787 -10.91587 -10.44554 -10.03622 -9.60381 -9.22998 -8.35979 -8.15591 -5.64438 0.06729 0.29761 1.13157 1.34655 1.41711 1.53149 2.45679 2.54079 2.89486 3.07260 3.38541 3.54389 3.70869 3.76486 3.90802 4.01049 4.11552 4.19283 4.24465 4.35879 4.37757 4.47145 4.49307 4.58192 4.58874 4.67102 4.72312 4.78343 4.83225 4.86530 4.90525 4.91952 4.93159 5.00256 5.14255 5.19690 5.22529 5.33434 5.45122 5.51300 5.53481 5.63660 5.77125 6.01719 6.16420 6.23473 6.37050 6.87906 7.13662 7.68042 8.27409 9.01327 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.002473 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.955675 B =11317.444781 C =11588.182610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 H 0.020 0.980 4 C 0.060 3.940 5 N -0.531 5.531 6 C 0.033 3.967 7 C 0.156 3.844 8 H 0.100 0.900 9 O -0.553 6.553 10 C -0.113 4.113 11 C -0.098 4.098 12 C -0.112 4.112 13 C -0.047 4.047 14 Cl -0.074 7.074 15 C -0.115 4.115 16 C -0.104 4.104 17 C 0.059 3.941 18 C 0.160 3.840 19 H 0.027 0.973 20 C -0.123 4.123 21 N -0.611 5.611 22 C -0.249 4.249 23 H 0.036 0.964 24 C 0.017 3.983 25 N -0.935 5.935 26 Si 0.918 3.082 27 H -0.265 1.265 28 H -0.309 1.309 29 H -0.277 1.277 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.021 0.979 35 H 0.095 0.905 36 H 0.040 0.960 37 H 0.385 0.615 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.093 0.907 43 H 0.020 0.980 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.305 -2.398 -22.131 27.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.061 3.939 3 H 0.038 0.962 4 C -0.069 4.069 5 N -0.255 5.255 6 C -0.094 4.094 7 C 0.096 3.904 8 H 0.118 0.882 9 O -0.360 6.360 10 C -0.114 4.114 11 C -0.116 4.116 12 C -0.130 4.130 13 C -0.073 4.073 14 Cl -0.045 7.045 15 C -0.133 4.133 16 C -0.123 4.123 17 C -0.070 4.070 18 C 0.055 3.945 19 H 0.045 0.955 20 C -0.181 4.181 21 N -0.338 5.338 22 C -0.379 4.379 23 H 0.053 0.947 24 C -0.181 4.181 25 N -0.578 5.578 26 Si 0.747 3.253 27 H -0.191 1.191 28 H -0.237 1.237 29 H -0.203 1.203 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.039 0.961 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.234 0.766 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.112 0.888 43 H 0.039 0.961 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.791 -1.893 -22.127 26.683 hybrid contribution -0.117 -0.159 0.290 0.351 sum 14.674 -2.052 -21.837 26.389 Atomic orbital electron populations 1.21959 0.95567 1.01611 1.00431 1.20713 0.92907 0.93708 0.86524 0.96193 1.22469 0.87623 0.98440 0.98375 1.61863 1.10444 1.50460 1.02724 1.22837 1.01076 0.96596 0.88940 1.20745 0.99203 0.81670 0.88788 0.88206 1.86650 1.30701 1.23580 1.95110 1.20675 0.95512 0.98068 0.97131 1.21119 0.94165 0.99505 0.96772 1.21255 1.01093 0.96772 0.93880 1.21151 0.95019 1.00853 0.90323 1.98374 1.82354 1.88363 1.35435 1.21228 0.93613 1.00682 0.97795 1.21193 1.00780 0.96856 0.93422 1.22498 1.00350 0.93563 0.90588 1.20831 0.84430 0.95663 0.93618 0.95531 1.21623 1.00502 0.98595 0.97387 1.44689 1.02804 1.68757 1.17582 1.18173 1.14214 0.92900 1.12612 0.94654 1.26205 0.95950 1.00477 0.95515 1.70002 1.10890 1.35427 1.41456 0.86476 0.78274 0.83973 0.76593 1.19058 1.23696 1.20252 0.93646 0.93740 0.91671 0.89470 0.96125 0.88707 0.94229 0.76556 0.82968 0.83270 0.83690 0.83983 0.88835 0.96126 0.90410 0.94146 0.94215 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 7.71 71.98 0.56 -5.52 16 2 C 0.17 7.09 2.46 44.96 0.11 7.20 16 3 H 0.02 0.91 7.43 -2.39 -0.02 0.90 16 4 C 0.06 2.04 4.51 86.38 0.39 2.43 16 5 N -0.53 -15.59 4.52 -895.26 -4.05 -19.64 16 6 C 0.03 0.70 4.79 86.30 0.41 1.12 16 7 C 0.16 3.00 2.55 29.85 0.08 3.08 16 8 H 0.10 2.12 6.29 -2.39 -0.02 2.11 16 9 O -0.55 -11.81 12.89 -148.98 -1.92 -13.73 16 10 C -0.11 -1.82 4.97 -19.86 -0.10 -1.92 16 11 C -0.10 -1.31 9.32 22.26 0.21 -1.10 16 12 C -0.11 -1.52 9.83 22.29 0.22 -1.30 16 13 C -0.05 -0.72 6.32 22.32 0.14 -0.58 16 14 Cl -0.07 -1.11 28.96 -2.72 -0.08 -1.19 16 15 C -0.11 -1.72 9.83 22.29 0.22 -1.50 16 16 C -0.10 -1.63 9.67 22.26 0.22 -1.41 16 17 C 0.06 1.84 4.91 86.38 0.42 2.26 16 18 C 0.16 6.23 3.66 44.96 0.16 6.40 16 19 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 20 C -0.12 -4.53 8.17 71.98 0.59 -3.95 16 21 N -0.61 -28.48 2.29 -650.64 -1.49 -29.97 16 22 C -0.25 -13.66 7.30 84.03 0.61 -13.04 16 23 H 0.04 2.17 7.25 -2.91 -0.02 2.15 16 24 C 0.02 0.96 3.84 84.86 0.33 1.29 16 25 N -0.94 -56.62 13.97 21.65 0.30 -56.32 16 26 Si 0.92 46.45 24.78 68.60 1.70 48.15 16 27 H -0.26 -12.74 6.29 99.48 0.63 -12.12 16 28 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 29 H -0.28 -14.08 7.11 99.48 0.71 -13.38 16 30 H 0.04 2.15 7.74 -2.39 -0.02 2.13 16 31 H 0.04 2.18 3.19 -2.39 -0.01 2.17 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 2.66 5.80 -2.38 -0.01 2.65 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.38 5.53 7.50 -74.06 -0.56 4.97 16 38 H 0.15 1.33 6.77 -2.91 -0.02 1.31 16 39 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 1.89 8.04 -2.91 -0.02 1.86 16 42 H 0.09 2.34 8.11 -2.39 -0.02 2.32 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.04 1.57 7.55 -2.39 -0.02 1.55 16 46 H 0.04 1.64 7.69 -2.39 -0.02 1.62 16 47 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -66.40 372.54 -0.63 -67.03 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.34 Total: 12.23 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 4.57 Total: -6.56 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -5.23 Total: -105.93 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.92 Total: -13.73 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.70 Total: 48.15 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -66.40 -0.63 -67.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.057 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds