Wall clock time and date at job start Tue Mar 31 2020 21:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.62612 * 2 1 4 4 C 1.53238 * 109.62467 * 120.38867 * 2 1 3 5 5 N 1.46897 * 109.33868 * 173.54029 * 4 2 1 6 6 C 1.46901 * 111.00190 * 172.74435 * 5 4 2 7 7 C 1.52996 * 109.47082 * 283.76305 * 6 5 4 8 8 H 1.09004 * 109.47453 * 56.85348 * 7 6 5 9 9 O 1.42909 * 109.46923 * 296.85826 * 7 6 5 10 10 C 1.50696 * 109.47069 * 176.86093 * 7 6 5 11 11 C 1.38246 * 119.99036 * 84.72741 * 10 7 6 12 12 C 1.38213 * 120.01256 * 179.72779 * 11 10 7 13 13 C 1.38351 * 119.98452 * 0.54080 * 12 11 10 14 14 Cl 1.73608 * 120.01095 * 179.70619 * 13 12 11 15 15 C 1.38350 * 119.97588 * 359.73189 * 13 12 11 16 16 C 1.38210 * 119.98707 * 359.97438 * 15 13 12 17 17 C 1.46902 * 111.27018 * 296.89325 * 5 4 2 18 18 C 1.53242 * 109.33757 * 63.10456 * 17 5 4 19 19 H 1.08999 * 109.62687 * 186.26915 * 18 17 5 20 20 C 1.52990 * 109.63190 * 65.88253 * 18 17 5 21 21 N 1.47075 * 109.62711 * 239.41391 * 2 1 3 22 22 C 1.36941 * 120.88324 * 9.08599 * 21 2 1 23 23 H 1.07990 * 120.00040 * 333.46568 * 22 21 2 24 24 C 1.38816 * 119.99861 * 153.46056 * 22 21 2 25 25 N 1.31618 * 120.00145 * 345.28686 * 24 22 21 26 26 Si 1.86803 * 119.99739 * 165.28404 * 24 22 21 27 27 H 1.48497 * 109.46991 * 60.00230 * 26 24 22 28 28 H 1.48502 * 109.46861 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47294 * 300.00025 * 26 24 22 30 30 H 1.09001 * 109.47480 * 299.61288 * 1 2 3 31 31 H 1.09009 * 109.47210 * 59.61271 * 1 2 3 32 32 H 1.09002 * 109.47204 * 179.60849 * 1 2 3 33 33 H 1.08998 * 109.49139 * 293.49692 * 4 2 1 34 34 H 1.08997 * 109.49796 * 53.57813 * 4 2 1 35 35 H 1.08994 * 109.46822 * 43.76199 * 6 5 4 36 36 H 1.09000 * 109.47030 * 163.76139 * 6 5 4 37 37 H 0.96703 * 113.99915 * 299.99970 * 9 7 6 38 38 H 1.07999 * 119.99104 * 359.97438 * 11 10 7 39 39 H 1.07997 * 120.00401 * 180.27429 * 12 11 10 40 40 H 1.08003 * 120.00565 * 180.02562 * 15 13 12 41 41 H 1.07995 * 119.99271 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.49488 * 183.06074 * 17 5 4 43 43 H 1.09001 * 109.49391 * 303.14823 * 17 5 4 44 44 H 1.09004 * 109.47442 * 59.99550 * 20 18 17 45 45 H 1.09002 * 109.47938 * 179.97438 * 20 18 17 46 46 H 1.09005 * 109.47191 * 300.00080 * 20 18 17 47 47 H 0.97000 * 120.00111 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7301 1.2451 5 7 3.5053 -0.8625 1.1624 6 6 4.0567 -1.4021 2.4125 7 6 4.0781 -0.3031 3.4768 8 1 3.0712 0.0922 3.6113 9 8 4.9505 0.7485 3.0581 10 6 4.5713 -0.8759 4.7804 11 6 5.9288 -0.9645 5.0267 12 6 6.3816 -1.4845 6.2245 13 6 5.4762 -1.9268 7.1726 14 17 6.0443 -2.5871 8.6743 15 6 4.1179 -1.8430 6.9233 16 6 3.6662 -1.3172 5.7276 17 6 3.9015 -1.6872 0.0131 18 6 3.4629 -0.9962 -1.2825 19 1 3.6540 -1.6535 -2.1308 20 6 4.2416 0.3090 -1.4580 21 7 2.0240 -0.7049 -1.1926 22 6 1.1671 -1.0803 -2.1925 23 1 0.1264 -1.2648 -1.9708 24 6 1.6361 -1.2238 -3.4911 25 7 2.8097 -0.7303 -3.8252 26 14 0.6017 -2.1172 -4.7644 27 1 -0.6971 -1.4159 -4.9275 28 1 1.3212 -2.1338 -6.0634 29 1 0.3584 -3.5114 -4.3148 30 1 -0.3634 0.5078 0.8934 31 1 -0.3634 0.5199 -0.8866 32 1 -0.3634 -1.0277 -0.0070 33 1 1.7809 -0.1602 2.1359 34 1 1.5923 -1.7203 1.2992 35 1 3.4354 -2.2289 2.7565 36 1 5.0718 -1.7586 2.2379 37 1 5.8655 0.4684 2.9187 38 1 6.6354 -0.6236 4.2846 39 1 7.4420 -1.5496 6.4186 40 1 3.4107 -2.1877 7.6632 41 1 2.6060 -1.2522 5.5327 42 1 4.9844 -1.8112 0.0105 43 1 3.4232 -2.6640 0.0842 44 1 5.3086 0.0917 -1.5070 45 1 3.9280 0.7980 -2.3803 46 1 4.0433 0.9670 -0.6119 47 1 3.1373 -0.8302 -4.7328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:58 Heat of formation + Delta-G solvation = 2.260544 kcal Electronic energy + Delta-G solvation = -27777.712613 eV Core-core repulsion = 23987.035928 eV Total energy + Delta-G solvation = -3790.676685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.08127 -38.59021 -37.22143 -36.40438 -34.45490 -32.52849 -31.91782 -31.33349 -31.02446 -28.29585 -27.31936 -26.14400 -24.56256 -23.61289 -23.13962 -21.93241 -20.90655 -20.64612 -18.54105 -17.95342 -16.53998 -16.24364 -16.15656 -15.45340 -15.16297 -14.87237 -14.58114 -14.34753 -13.93859 -13.86634 -13.75783 -13.70280 -13.35224 -13.12040 -12.73014 -12.42534 -12.05966 -11.93464 -11.80587 -11.67782 -11.51409 -11.25781 -11.15175 -11.02708 -10.90556 -10.77926 -10.57419 -10.50993 -10.43538 -10.16602 -9.94637 -9.86989 -9.41455 -9.37906 -9.21073 -8.84907 -8.41996 -7.72215 -6.57759 -5.71403 -3.13525 0.77995 0.95382 1.80158 3.25650 3.39708 3.45875 3.46433 4.11761 4.38912 4.45833 4.51980 4.54135 4.78375 4.94204 4.95836 5.13425 5.21289 5.32310 5.36526 5.43818 5.55418 5.66465 5.78070 5.83306 5.86275 5.88245 5.95126 6.10823 6.14163 6.25049 6.27300 6.33811 6.36273 6.44103 6.46152 6.66446 6.91317 6.99481 7.09189 7.16884 7.29687 7.55998 7.56714 7.71356 7.77996 7.90769 8.01404 8.51011 9.29470 9.91562 10.49479 11.35742 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.002344 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.584763 B =11942.311245 C =12173.873147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 H 0.034 0.966 4 C 0.049 3.951 5 N -0.518 5.518 6 C 0.028 3.972 7 C 0.154 3.846 8 H 0.108 0.892 9 O -0.536 6.536 10 C -0.104 4.104 11 C -0.099 4.099 12 C -0.107 4.107 13 C -0.039 4.039 14 Cl -0.075 7.075 15 C -0.108 4.108 16 C -0.098 4.098 17 C 0.042 3.958 18 C 0.198 3.802 19 H 0.098 0.902 20 C -0.133 4.133 21 N -0.585 5.585 22 C -0.246 4.246 23 H 0.069 0.931 24 C 0.000 4.000 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.368 0.632 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.058 0.942 43 H 0.021 0.979 44 H 0.018 0.982 45 H 0.070 0.930 46 H 0.035 0.965 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.017 -2.024 20.672 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.065 3.935 3 H 0.052 0.948 4 C -0.080 4.080 5 N -0.242 5.242 6 C -0.101 4.101 7 C 0.094 3.906 8 H 0.126 0.874 9 O -0.340 6.340 10 C -0.105 4.105 11 C -0.117 4.117 12 C -0.126 4.126 13 C -0.065 4.065 14 Cl -0.047 7.047 15 C -0.127 4.127 16 C -0.116 4.116 17 C -0.087 4.087 18 C 0.091 3.909 19 H 0.115 0.885 20 C -0.192 4.192 21 N -0.308 5.308 22 C -0.376 4.376 23 H 0.087 0.913 24 C -0.198 4.198 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.215 0.785 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.089 0.911 46 H 0.054 0.946 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.770 -1.275 20.578 21.410 hybrid contribution -0.216 -1.821 -0.359 1.868 sum 5.554 -3.096 20.219 21.196 Atomic orbital electron populations 1.21815 0.96230 1.01227 1.00353 1.20434 0.92087 0.94353 0.86587 0.94795 1.22707 0.86944 0.98899 0.99497 1.61833 1.10926 1.50286 1.01142 1.22773 1.00507 0.95100 0.91749 1.20828 0.94610 0.87896 0.87282 0.87442 1.86695 1.22555 1.35032 1.89724 1.20876 0.93949 0.98240 0.97416 1.20888 0.95248 0.98856 0.96747 1.21021 0.99665 0.98907 0.92977 1.20946 0.94155 1.02519 0.88915 1.98371 1.89474 1.84476 1.32333 1.21049 0.93623 1.00002 0.98000 1.21000 1.00130 0.97949 0.92569 1.22903 0.98420 0.94369 0.92961 1.20429 0.82814 0.95371 0.92260 0.88481 1.21937 0.96373 0.99444 1.01488 1.44262 1.03533 1.64917 1.18098 1.19161 0.92809 1.39056 0.86583 0.91285 1.25008 0.97479 1.00545 0.96760 1.69979 1.19572 1.46839 1.18182 0.86415 0.79647 0.79894 0.81028 1.21102 1.21759 1.21351 0.94279 0.91851 0.93023 0.92401 0.95600 0.94433 0.91059 0.78476 0.85012 0.84875 0.84878 0.84857 0.92358 0.96059 0.96253 0.91125 0.94554 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.93 37.16 0.29 -2.27 16 2 C 0.17 3.55 3.25 -67.49 -0.22 3.34 16 3 H 0.03 0.76 7.62 -51.93 -0.40 0.37 16 4 C 0.05 0.86 4.74 -3.70 -0.02 0.84 16 5 N -0.52 -8.77 3.98 -234.32 -0.93 -9.70 16 6 C 0.03 0.36 4.64 -3.83 -0.02 0.35 16 7 C 0.15 1.79 3.29 -27.89 -0.09 1.70 16 8 H 0.11 1.32 6.67 -51.93 -0.35 0.97 16 9 O -0.54 -6.85 13.06 -35.23 -0.46 -7.31 16 10 C -0.10 -1.03 5.00 -104.62 -0.52 -1.55 16 11 C -0.10 -0.88 9.33 -39.59 -0.37 -1.25 16 12 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 13 C -0.04 -0.36 6.32 -39.50 -0.25 -0.61 16 14 Cl -0.08 -0.65 28.96 -51.86 -1.50 -2.16 16 15 C -0.11 -0.96 9.83 -39.55 -0.39 -1.34 16 16 C -0.10 -0.91 9.68 -39.59 -0.38 -1.29 16 17 C 0.04 0.81 4.98 -3.70 -0.02 0.79 16 18 C 0.20 4.56 2.34 -67.49 -0.16 4.40 16 19 H 0.10 2.55 6.04 -51.93 -0.31 2.24 16 20 C -0.13 -3.02 8.96 37.15 0.33 -2.69 16 21 N -0.58 -14.08 2.74 -157.01 -0.43 -14.51 16 22 C -0.25 -6.48 8.74 -15.06 -0.13 -6.61 16 23 H 0.07 1.78 6.15 -52.49 -0.32 1.46 16 24 C 0.00 0.00 5.00 -17.43 -0.09 -0.09 16 25 N -0.90 -25.07 9.66 55.49 0.54 -24.53 16 26 Si 0.90 21.39 29.58 -169.99 -5.03 16.37 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.26 7.58 -51.92 -0.39 0.87 16 32 H 0.05 0.97 7.54 -51.93 -0.39 0.57 16 33 H 0.06 0.89 6.67 -51.93 -0.35 0.54 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.04 0.49 7.99 -51.93 -0.42 0.08 16 36 H 0.07 0.88 7.76 -51.93 -0.40 0.47 16 37 H 0.37 3.50 7.40 45.56 0.34 3.84 16 38 H 0.13 0.92 6.62 -52.49 -0.35 0.57 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.06 1.02 7.89 -51.93 -0.41 0.61 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 46 H 0.04 0.81 7.07 -51.93 -0.37 0.44 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -29.10 378.12 -11.10 -40.21 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.57 Total: 3.54 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -2.42 Total: -7.61 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.83 Total: -48.74 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.46 Total: -7.31 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.10 -11.10 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.466 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds