Wall clock time and date at job start Tue Mar 31 2020 21:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.62612 * 2 1 4 4 C 1.53238 * 109.62467 * 120.38867 * 2 1 3 5 5 N 1.46897 * 109.33868 * 173.54029 * 4 2 1 6 6 C 1.46901 * 111.00190 * 172.74435 * 5 4 2 7 7 C 1.52996 * 109.47082 * 283.76305 * 6 5 4 8 8 H 1.09004 * 109.47453 * 56.85348 * 7 6 5 9 9 O 1.42909 * 109.46923 * 296.85826 * 7 6 5 10 10 C 1.50696 * 109.47069 * 176.86093 * 7 6 5 11 11 C 1.38246 * 119.99036 * 84.72741 * 10 7 6 12 12 C 1.38213 * 120.01256 * 179.72779 * 11 10 7 13 13 C 1.38351 * 119.98452 * 0.54080 * 12 11 10 14 14 Cl 1.73608 * 120.01095 * 179.70619 * 13 12 11 15 15 C 1.38350 * 119.97588 * 359.73189 * 13 12 11 16 16 C 1.38210 * 119.98707 * 359.97438 * 15 13 12 17 17 C 1.46902 * 111.27018 * 296.89325 * 5 4 2 18 18 C 1.53242 * 109.33757 * 63.10456 * 17 5 4 19 19 H 1.08999 * 109.62687 * 186.26915 * 18 17 5 20 20 C 1.52990 * 109.63190 * 65.88253 * 18 17 5 21 21 N 1.47075 * 109.62711 * 239.41391 * 2 1 3 22 22 C 1.36941 * 120.88324 * 9.08599 * 21 2 1 23 23 H 1.07990 * 120.00040 * 333.46568 * 22 21 2 24 24 C 1.38816 * 119.99861 * 153.46056 * 22 21 2 25 25 N 1.31618 * 120.00145 * 345.28686 * 24 22 21 26 26 Si 1.86803 * 119.99739 * 165.28404 * 24 22 21 27 27 H 1.48497 * 109.46991 * 60.00230 * 26 24 22 28 28 H 1.48502 * 109.46861 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47294 * 300.00025 * 26 24 22 30 30 H 1.09001 * 109.47480 * 299.61288 * 1 2 3 31 31 H 1.09009 * 109.47210 * 59.61271 * 1 2 3 32 32 H 1.09002 * 109.47204 * 179.60849 * 1 2 3 33 33 H 1.08998 * 109.49139 * 293.49692 * 4 2 1 34 34 H 1.08997 * 109.49796 * 53.57813 * 4 2 1 35 35 H 1.08994 * 109.46822 * 43.76199 * 6 5 4 36 36 H 1.09000 * 109.47030 * 163.76139 * 6 5 4 37 37 H 0.96703 * 113.99915 * 299.99970 * 9 7 6 38 38 H 1.07999 * 119.99104 * 359.97438 * 11 10 7 39 39 H 1.07997 * 120.00401 * 180.27429 * 12 11 10 40 40 H 1.08003 * 120.00565 * 180.02562 * 15 13 12 41 41 H 1.07995 * 119.99271 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.49488 * 183.06074 * 17 5 4 43 43 H 1.09001 * 109.49391 * 303.14823 * 17 5 4 44 44 H 1.09004 * 109.47442 * 59.99550 * 20 18 17 45 45 H 1.09002 * 109.47938 * 179.97438 * 20 18 17 46 46 H 1.09005 * 109.47191 * 300.00080 * 20 18 17 47 47 H 0.97000 * 120.00111 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7301 1.2451 5 7 3.5053 -0.8625 1.1624 6 6 4.0567 -1.4021 2.4125 7 6 4.0781 -0.3031 3.4768 8 1 3.0712 0.0922 3.6113 9 8 4.9505 0.7485 3.0581 10 6 4.5713 -0.8759 4.7804 11 6 5.9288 -0.9645 5.0267 12 6 6.3816 -1.4845 6.2245 13 6 5.4762 -1.9268 7.1726 14 17 6.0443 -2.5871 8.6743 15 6 4.1179 -1.8430 6.9233 16 6 3.6662 -1.3172 5.7276 17 6 3.9015 -1.6872 0.0131 18 6 3.4629 -0.9962 -1.2825 19 1 3.6540 -1.6535 -2.1308 20 6 4.2416 0.3090 -1.4580 21 7 2.0240 -0.7049 -1.1926 22 6 1.1671 -1.0803 -2.1925 23 1 0.1264 -1.2648 -1.9708 24 6 1.6361 -1.2238 -3.4911 25 7 2.8097 -0.7303 -3.8252 26 14 0.6017 -2.1172 -4.7644 27 1 -0.6971 -1.4159 -4.9275 28 1 1.3212 -2.1338 -6.0634 29 1 0.3584 -3.5114 -4.3148 30 1 -0.3634 0.5078 0.8934 31 1 -0.3634 0.5199 -0.8866 32 1 -0.3634 -1.0277 -0.0070 33 1 1.7809 -0.1602 2.1359 34 1 1.5923 -1.7203 1.2992 35 1 3.4354 -2.2289 2.7565 36 1 5.0718 -1.7586 2.2379 37 1 5.8655 0.4684 2.9187 38 1 6.6354 -0.6236 4.2846 39 1 7.4420 -1.5496 6.4186 40 1 3.4107 -2.1877 7.6632 41 1 2.6060 -1.2522 5.5327 42 1 4.9844 -1.8112 0.0105 43 1 3.4232 -2.6640 0.0842 44 1 5.3086 0.0917 -1.5070 45 1 3.9280 0.7980 -2.3803 46 1 4.0433 0.9670 -0.6119 47 1 3.1373 -0.8302 -4.7328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878772173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:57 Heat of formation + Delta-G solvation = -14.881778 kcal Electronic energy + Delta-G solvation = -27778.455960 eV Core-core repulsion = 23987.035928 eV Total energy + Delta-G solvation = -3791.420032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.89327 -39.95497 -38.16283 -37.19676 -35.95283 -34.22187 -33.26040 -32.34061 -31.95725 -29.85593 -28.68282 -27.64844 -26.13079 -25.08694 -23.81518 -23.11118 -22.30929 -21.81789 -20.31709 -18.71348 -17.97688 -17.40651 -17.04811 -16.95329 -16.30537 -16.01889 -15.95268 -15.64972 -15.34514 -15.07692 -14.85096 -14.77835 -14.42937 -14.40740 -14.10390 -13.62196 -13.29639 -13.25948 -13.14447 -12.81792 -12.74572 -12.61509 -12.50764 -12.38680 -12.31119 -12.21634 -12.17184 -11.90928 -11.86625 -11.73434 -11.59841 -11.18363 -11.18077 -10.83725 -10.40335 -10.02089 -9.59451 -9.09650 -8.49388 -7.73862 -5.17165 0.08865 0.31378 1.14172 1.49031 1.50240 1.56181 2.55735 2.57055 2.97835 3.39607 3.58874 3.65269 3.78962 3.81460 3.93313 4.04160 4.18258 4.30680 4.37445 4.39826 4.40968 4.57510 4.62095 4.64555 4.68903 4.73716 4.81300 4.84611 4.89776 4.92589 5.01120 5.03341 5.15847 5.20085 5.23911 5.29987 5.37236 5.45292 5.53732 5.58488 5.74557 5.79025 5.83379 6.05637 6.26729 6.33842 6.52809 6.91580 7.28980 8.00117 8.52691 9.30623 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.002344 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.584763 B =11942.311245 C =12173.873147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.164 3.836 3 H 0.015 0.985 4 C 0.059 3.941 5 N -0.524 5.524 6 C 0.032 3.968 7 C 0.165 3.835 8 H 0.102 0.898 9 O -0.555 6.555 10 C -0.113 4.113 11 C -0.101 4.101 12 C -0.112 4.112 13 C -0.048 4.048 14 Cl -0.075 7.075 15 C -0.114 4.114 16 C -0.103 4.103 17 C 0.056 3.944 18 C 0.195 3.805 19 H 0.060 0.940 20 C -0.114 4.114 21 N -0.600 5.600 22 C -0.249 4.249 23 H 0.071 0.929 24 C -0.052 4.052 25 N -0.924 5.924 26 Si 0.957 3.043 27 H -0.281 1.281 28 H -0.298 1.298 29 H -0.284 1.284 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.021 0.979 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.381 0.619 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.077 0.923 43 H 0.011 0.989 44 H 0.035 0.965 45 H 0.032 0.968 46 H 0.036 0.964 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 -2.479 22.934 23.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 H 0.033 0.967 4 C -0.070 4.070 5 N -0.248 5.248 6 C -0.097 4.097 7 C 0.106 3.894 8 H 0.120 0.880 9 O -0.361 6.361 10 C -0.114 4.114 11 C -0.119 4.119 12 C -0.131 4.131 13 C -0.075 4.075 14 Cl -0.046 7.046 15 C -0.132 4.132 16 C -0.121 4.121 17 C -0.073 4.073 18 C 0.088 3.912 19 H 0.078 0.922 20 C -0.173 4.173 21 N -0.324 5.324 22 C -0.380 4.380 23 H 0.089 0.911 24 C -0.247 4.247 25 N -0.571 5.571 26 Si 0.787 3.213 27 H -0.207 1.207 28 H -0.225 1.225 29 H -0.210 1.210 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.230 0.770 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.095 0.905 43 H 0.029 0.971 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.868 -1.732 22.877 23.681 hybrid contribution -0.221 -1.642 -0.977 1.923 sum 5.647 -3.374 21.900 22.867 Atomic orbital electron populations 1.21723 0.94763 1.01152 1.01121 1.20625 0.93461 0.93403 0.86674 0.96742 1.22531 0.87313 0.98489 0.98653 1.61771 1.10636 1.50267 1.02144 1.22829 1.00870 0.95799 0.90158 1.20633 0.94398 0.86979 0.87434 0.88043 1.86662 1.23729 1.35860 1.89877 1.20742 0.94575 0.99207 0.96884 1.21111 0.95236 0.98373 0.97197 1.21237 1.00476 0.98581 0.92781 1.21146 0.94583 1.02593 0.89138 1.98372 1.89465 1.84456 1.32276 1.21240 0.93865 0.99872 0.98258 1.21189 1.00808 0.97626 0.92506 1.22586 0.99290 0.93382 0.92026 1.20315 0.82740 0.94908 0.93226 0.92237 1.21702 0.97207 0.99053 0.99369 1.44508 1.03778 1.65464 1.18661 1.19446 0.93258 1.38021 0.87235 0.91132 1.25656 0.98683 1.01874 0.98487 1.70155 1.20894 1.48215 1.17855 0.85498 0.78284 0.78882 0.78642 1.20684 1.22475 1.21031 0.90654 0.93991 0.93366 0.89607 0.96104 0.93927 0.89881 0.76950 0.83287 0.83423 0.83549 0.83639 0.90492 0.97119 0.94646 0.94870 0.94475 0.94631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.93 71.98 0.57 -4.09 16 2 C 0.16 6.68 3.25 44.96 0.15 6.82 16 3 H 0.01 0.66 7.62 -2.39 -0.02 0.64 16 4 C 0.06 1.96 4.74 86.38 0.41 2.37 16 5 N -0.52 -16.71 3.98 -895.27 -3.56 -20.27 16 6 C 0.03 0.74 4.64 86.30 0.40 1.14 16 7 C 0.17 3.40 3.29 29.85 0.10 3.49 16 8 H 0.10 2.20 6.67 -2.39 -0.02 2.18 16 9 O -0.55 -12.78 13.06 -148.98 -1.95 -14.73 16 10 C -0.11 -1.95 5.00 -19.86 -0.10 -2.05 16 11 C -0.10 -1.52 9.33 22.27 0.21 -1.31 16 12 C -0.11 -1.67 9.83 22.29 0.22 -1.46 16 13 C -0.05 -0.78 6.32 22.32 0.14 -0.64 16 14 Cl -0.07 -1.16 28.96 -2.72 -0.08 -1.24 16 15 C -0.11 -1.75 9.83 22.29 0.22 -1.53 16 16 C -0.10 -1.64 9.68 22.26 0.22 -1.43 16 17 C 0.06 2.09 4.98 86.38 0.43 2.52 16 18 C 0.19 9.07 2.34 44.96 0.11 9.18 16 19 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 20 C -0.11 -5.24 8.96 71.98 0.65 -4.59 16 21 N -0.60 -29.20 2.74 -650.67 -1.78 -30.98 16 22 C -0.25 -13.30 8.74 84.03 0.73 -12.56 16 23 H 0.07 3.67 6.15 -2.92 -0.02 3.65 16 24 C -0.05 -2.85 5.00 84.86 0.42 -2.42 16 25 N -0.92 -53.20 9.66 21.65 0.21 -52.99 16 26 Si 0.96 44.85 29.58 68.60 2.03 46.88 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 29 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.66 7.58 -2.38 -0.02 1.64 16 32 H 0.05 1.75 7.54 -2.39 -0.02 1.73 16 33 H 0.09 2.37 6.67 -2.39 -0.02 2.35 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.04 0.99 7.99 -2.39 -0.02 0.97 16 36 H 0.08 1.78 7.76 -2.39 -0.02 1.76 16 37 H 0.38 6.22 7.40 -74.06 -0.55 5.67 16 38 H 0.15 1.62 6.62 -2.91 -0.02 1.60 16 39 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.08 2.55 7.89 -2.39 -0.02 2.53 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.03 1.74 6.93 -2.39 -0.02 1.73 16 46 H 0.04 1.65 7.07 -2.38 -0.02 1.63 16 47 H 0.24 13.88 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -63.68 378.12 0.17 -63.51 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.43 Total: 16.37 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 4.87 Total: -6.55 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -5.13 Total: -104.25 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -1.95 Total: -14.73 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -63.68 0.17 -63.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.630 kcal (2) G-P(sol) polarization free energy of solvation -63.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds