Wall clock time and date at job start Tue Mar 31 2020 21:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.78537 * 2 1 4 4 C 1.53702 * 109.79724 * 239.32517 * 2 1 3 5 5 N 1.46896 * 109.25508 * 294.41937 * 4 2 1 6 6 C 1.46894 * 111.00116 * 172.61211 * 5 4 2 7 7 C 1.52997 * 109.47508 * 47.59457 * 6 5 4 8 8 H 1.09002 * 109.46838 * 304.04932 * 7 6 5 9 9 O 1.42896 * 109.47080 * 64.04707 * 7 6 5 10 10 C 1.50697 * 109.47302 * 184.05314 * 7 6 5 11 11 C 1.38242 * 119.98237 * 279.72202 * 10 7 6 12 12 C 1.38217 * 120.01132 * 179.72819 * 11 10 7 13 13 C 1.38352 * 119.98578 * 0.54789 * 12 11 10 14 14 Cl 1.73605 * 120.01249 * 179.75097 * 13 12 11 15 15 C 1.38346 * 119.97309 * 359.72323 * 13 12 11 16 16 C 1.38215 * 119.98957 * 0.02562 * 15 13 12 17 17 C 1.46906 * 111.27147 * 296.76077 * 5 4 2 18 18 C 1.53239 * 109.34136 * 63.09730 * 17 5 4 19 19 H 1.09000 * 109.62423 * 65.88497 * 18 17 5 20 20 C 1.52997 * 109.63159 * 186.46181 * 18 17 5 21 21 N 1.47074 * 109.63027 * 120.49061 * 2 1 3 22 22 C 1.36938 * 120.88140 * 248.52286 * 21 2 1 23 23 H 1.07996 * 120.00112 * 211.95275 * 22 21 2 24 24 C 1.38811 * 119.99923 * 31.95806 * 22 21 2 25 25 N 1.31624 * 120.00299 * 11.25555 * 24 22 21 26 26 Si 1.86799 * 120.00210 * 190.98311 * 24 22 21 27 27 H 1.48504 * 109.46702 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47501 * 119.99457 * 26 24 22 29 29 H 1.48496 * 109.47301 * 239.99911 * 26 24 22 30 30 H 1.09002 * 109.47511 * 299.51369 * 1 2 3 31 31 H 1.09001 * 109.47328 * 59.50750 * 1 2 3 32 32 H 1.08996 * 109.47276 * 179.51141 * 1 2 3 33 33 H 1.09003 * 109.64808 * 174.41996 * 4 2 1 34 34 H 1.08991 * 109.44371 * 54.29569 * 4 2 1 35 35 H 1.09000 * 109.47430 * 167.59856 * 6 5 4 36 36 H 1.09006 * 109.46893 * 287.58994 * 6 5 4 37 37 H 0.96704 * 113.99863 * 60.00456 * 9 7 6 38 38 H 1.08005 * 119.99730 * 0.02562 * 11 10 7 39 39 H 1.07998 * 120.00603 * 180.27711 * 12 11 10 40 40 H 1.08001 * 120.00550 * 179.97438 * 15 13 12 41 41 H 1.07998 * 119.99424 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.48769 * 303.14317 * 17 5 4 43 43 H 1.08997 * 109.49861 * 183.06683 * 17 5 4 44 44 H 1.08994 * 109.47228 * 179.03216 * 20 18 17 45 45 H 1.09005 * 109.47175 * 299.03714 * 20 18 17 46 46 H 1.09005 * 109.46905 * 59.03120 * 20 18 17 47 47 H 0.96995 * 120.00294 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0505 -0.7378 -1.2438 5 7 1.6752 -2.1554 -1.1586 6 6 1.9989 -2.8615 -2.4054 7 6 3.4261 -2.5136 -2.8329 8 1 3.5246 -1.4318 -2.9236 9 8 4.3477 -2.9953 -1.8529 10 6 3.7236 -3.1581 -4.1622 11 6 4.0748 -4.4940 -4.2191 12 6 4.3423 -5.0872 -5.4385 13 6 4.2696 -4.3409 -6.6012 14 17 4.6118 -5.0837 -8.1326 15 6 3.9236 -3.0027 -6.5431 16 6 3.6512 -2.4119 -5.3236 17 6 2.3101 -2.8065 -0.0049 18 6 1.8056 -2.1543 1.2869 19 1 0.7416 -2.3574 1.4082 20 6 2.5794 -2.7149 2.4818 21 7 2.0241 -0.7029 1.1937 22 6 2.6655 -0.0230 2.1945 23 1 3.4406 -0.5101 2.7675 24 6 2.3193 1.2922 2.4726 25 7 1.2372 1.8155 1.9361 26 14 3.3849 2.3171 3.6142 27 1 4.5313 1.5002 4.0873 28 1 3.8921 3.5061 2.8833 29 1 2.5784 2.7594 4.7799 30 1 -0.3634 0.5063 0.8943 31 1 -0.3634 0.5215 -0.8855 32 1 -0.3633 -1.0276 -0.0088 33 1 3.1360 -0.6513 -1.2937 34 1 1.6091 -0.2978 -2.1379 35 1 1.9196 -3.9368 -2.2452 36 1 1.3014 -2.5583 -3.1863 37 1 4.3153 -3.9526 -1.7195 38 1 4.1355 -5.0755 -3.3109 39 1 4.6123 -6.1319 -5.4832 40 1 3.8670 -2.4196 -7.4504 41 1 3.3806 -1.3673 -5.2782 42 1 3.3919 -2.6911 -0.0721 43 1 2.0565 -3.8665 -0.0003 44 1 2.2305 -2.2370 3.3971 45 1 2.4157 -3.7906 2.5484 46 1 3.6432 -2.5167 2.3511 47 1 0.9952 2.7343 2.1307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878772174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:01 Heat of formation + Delta-G solvation = 3.649038 kcal Electronic energy + Delta-G solvation = -28125.817633 eV Core-core repulsion = 24335.201157 eV Total energy + Delta-G solvation = -3790.616476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.22164 -38.73571 -37.11806 -36.41551 -34.31210 -32.51038 -31.81794 -31.34839 -31.05278 -28.27915 -27.23063 -25.92641 -24.84386 -23.52581 -23.13281 -21.90685 -21.21636 -20.40146 -18.50290 -17.96800 -16.61928 -16.29555 -16.10672 -15.32737 -15.25825 -14.69792 -14.57878 -14.41438 -14.03143 -13.82183 -13.77585 -13.71998 -13.22944 -13.07110 -12.80458 -12.23040 -11.97807 -11.81559 -11.77037 -11.66583 -11.50448 -11.18928 -11.10393 -10.99662 -10.91051 -10.78007 -10.73442 -10.48877 -10.38855 -10.38067 -9.96585 -9.69087 -9.41458 -9.36794 -9.15436 -8.92231 -8.40166 -7.55379 -6.45508 -5.69596 -3.16772 0.79690 0.96513 1.81312 3.27498 3.39811 3.48187 3.49505 4.27132 4.35658 4.42795 4.52701 4.54766 4.60870 4.95117 4.96180 5.14836 5.19479 5.34537 5.38504 5.47268 5.55704 5.70580 5.82712 5.89337 5.90899 5.93804 6.01359 6.14228 6.25407 6.27682 6.35059 6.41046 6.45046 6.48433 6.56084 6.70452 6.91346 7.05858 7.11303 7.16199 7.33542 7.48069 7.59938 7.66561 7.82014 7.90939 8.05119 8.57136 9.33057 9.93406 10.54504 11.37268 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.002527 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.512359 B =11076.433245 C =11269.946841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.202 3.798 3 H 0.089 0.911 4 C 0.035 3.965 5 N -0.519 5.519 6 C 0.030 3.970 7 C 0.107 3.893 8 H 0.115 0.885 9 O -0.541 6.541 10 C -0.100 4.100 11 C -0.101 4.101 12 C -0.107 4.107 13 C -0.039 4.039 14 Cl -0.076 7.076 15 C -0.107 4.107 16 C -0.098 4.098 17 C 0.037 3.963 18 C 0.171 3.829 19 H 0.028 0.972 20 C -0.136 4.136 21 N -0.583 5.583 22 C -0.245 4.245 23 H 0.067 0.933 24 C 0.004 3.996 25 N -0.900 5.900 26 Si 0.898 3.102 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.076 0.924 31 H 0.018 0.982 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.368 0.632 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.051 0.949 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -13.117 -15.973 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.095 3.905 3 H 0.107 0.893 4 C -0.094 4.094 5 N -0.241 5.241 6 C -0.099 4.099 7 C 0.046 3.954 8 H 0.132 0.868 9 O -0.346 6.346 10 C -0.101 4.101 11 C -0.120 4.120 12 C -0.125 4.125 13 C -0.066 4.066 14 Cl -0.047 7.047 15 C -0.126 4.126 16 C -0.116 4.116 17 C -0.093 4.093 18 C 0.064 3.936 19 H 0.046 0.954 20 C -0.194 4.194 21 N -0.306 5.306 22 C -0.374 4.374 23 H 0.084 0.916 24 C -0.195 4.195 25 N -0.545 5.545 26 Si 0.729 3.271 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.094 0.906 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.215 0.785 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.702 -12.400 -15.927 20.521 hybrid contribution 1.186 -0.012 0.037 1.187 sum 4.889 -12.412 -15.889 20.747 Atomic orbital electron populations 1.21991 0.98025 0.99000 1.00530 1.20409 0.92471 0.95386 0.82216 0.89291 1.23009 0.97960 0.87664 1.00735 1.62229 1.57857 1.03000 1.01060 1.22935 0.93201 0.99381 0.94398 1.21861 0.90765 0.99511 0.83236 0.86785 1.86750 1.61427 1.27104 1.59335 1.20844 0.98068 0.94409 0.96792 1.20845 0.99329 0.94406 0.97384 1.21003 1.00453 1.00222 0.90855 1.20931 1.04826 0.93948 0.86896 1.98370 1.93697 1.82620 1.29992 1.21058 0.99637 0.92989 0.98878 1.21027 0.99155 1.00338 0.91117 1.22900 0.98454 0.96138 0.91768 1.20472 0.96120 0.85954 0.91029 0.95437 1.21779 1.00486 0.97752 0.99364 1.44191 1.66848 1.01167 1.18389 1.19177 1.12211 0.95012 1.11050 0.91564 1.25150 0.96278 0.99206 0.98845 1.69971 1.23501 1.14061 1.46938 0.86285 0.79935 0.80396 0.80517 1.20427 1.21809 1.21867 0.90552 0.96325 0.94930 0.94813 0.92692 0.91146 0.90293 0.78462 0.85289 0.84937 0.84865 0.84803 0.92367 0.93126 0.91943 0.94492 0.92989 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.96 37.16 0.33 -2.76 16 2 C 0.20 4.65 2.35 -67.25 -0.16 4.49 16 3 H 0.09 2.34 6.36 -51.93 -0.33 2.01 16 4 C 0.04 0.66 3.97 -3.46 -0.01 0.65 16 5 N -0.52 -8.69 4.32 -234.02 -1.01 -9.70 16 6 C 0.03 0.38 5.26 -3.83 -0.02 0.36 16 7 C 0.11 1.29 2.61 -27.89 -0.07 1.21 16 8 H 0.11 1.55 6.08 -51.93 -0.32 1.23 16 9 O -0.54 -7.08 10.37 -35.23 -0.37 -7.44 16 10 C -0.10 -1.03 4.97 -104.62 -0.52 -1.55 16 11 C -0.10 -0.92 9.32 -39.59 -0.37 -1.28 16 12 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 13 C -0.04 -0.37 6.32 -39.50 -0.25 -0.62 16 14 Cl -0.08 -0.67 28.96 -51.86 -1.50 -2.17 16 15 C -0.11 -0.98 9.83 -39.55 -0.39 -1.37 16 16 C -0.10 -0.95 9.67 -39.59 -0.38 -1.33 16 17 C 0.04 0.63 4.39 -3.70 -0.02 0.61 16 18 C 0.17 3.54 3.25 -67.49 -0.22 3.32 16 19 H 0.03 0.62 7.61 -51.93 -0.40 0.23 16 20 C -0.14 -2.55 7.97 37.16 0.30 -2.26 16 21 N -0.58 -14.06 2.71 -156.74 -0.42 -14.49 16 22 C -0.24 -6.48 8.56 -15.06 -0.13 -6.61 16 23 H 0.07 1.75 6.34 -52.49 -0.33 1.41 16 24 C 0.00 0.10 5.04 -17.43 -0.09 0.01 16 25 N -0.90 -25.15 9.63 55.49 0.53 -24.62 16 26 Si 0.90 21.54 29.57 -169.99 -5.03 16.51 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 30 H 0.08 1.97 6.68 -51.93 -0.35 1.63 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.71 7.06 -51.93 -0.37 0.35 16 33 H 0.03 0.67 6.60 -51.93 -0.34 0.33 16 34 H 0.05 0.95 8.11 -51.93 -0.42 0.52 16 35 H 0.07 0.80 7.84 -51.93 -0.41 0.40 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.37 3.53 7.50 45.56 0.34 3.87 16 38 H 0.13 0.91 6.78 -52.48 -0.36 0.55 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.14 8.04 -52.49 -0.42 0.72 16 42 H 0.06 1.06 5.81 -51.93 -0.30 0.75 16 43 H 0.05 0.76 7.92 -51.93 -0.41 0.35 16 44 H 0.06 1.27 7.58 -51.93 -0.39 0.87 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.99 7.56 -51.93 -0.39 0.60 16 47 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -29.15 371.87 -11.02 -40.17 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.44 Total: 4.57 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -2.39 Total: -8.45 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.90 Total: -48.80 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.37 Total: -7.44 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.15 -11.02 -40.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.820 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds