Wall clock time and date at job start Tue Mar 31 2020 21:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.78537 * 2 1 4 4 C 1.53702 * 109.79724 * 239.32517 * 2 1 3 5 5 N 1.46896 * 109.25508 * 294.41937 * 4 2 1 6 6 C 1.46894 * 111.00116 * 172.61211 * 5 4 2 7 7 C 1.52997 * 109.47508 * 47.59457 * 6 5 4 8 8 H 1.09002 * 109.46838 * 304.04932 * 7 6 5 9 9 O 1.42896 * 109.47080 * 64.04707 * 7 6 5 10 10 C 1.50697 * 109.47302 * 184.05314 * 7 6 5 11 11 C 1.38242 * 119.98237 * 279.72202 * 10 7 6 12 12 C 1.38217 * 120.01132 * 179.72819 * 11 10 7 13 13 C 1.38352 * 119.98578 * 0.54789 * 12 11 10 14 14 Cl 1.73605 * 120.01249 * 179.75097 * 13 12 11 15 15 C 1.38346 * 119.97309 * 359.72323 * 13 12 11 16 16 C 1.38215 * 119.98957 * 0.02562 * 15 13 12 17 17 C 1.46906 * 111.27147 * 296.76077 * 5 4 2 18 18 C 1.53239 * 109.34136 * 63.09730 * 17 5 4 19 19 H 1.09000 * 109.62423 * 65.88497 * 18 17 5 20 20 C 1.52997 * 109.63159 * 186.46181 * 18 17 5 21 21 N 1.47074 * 109.63027 * 120.49061 * 2 1 3 22 22 C 1.36938 * 120.88140 * 248.52286 * 21 2 1 23 23 H 1.07996 * 120.00112 * 211.95275 * 22 21 2 24 24 C 1.38811 * 119.99923 * 31.95806 * 22 21 2 25 25 N 1.31624 * 120.00299 * 11.25555 * 24 22 21 26 26 Si 1.86799 * 120.00210 * 190.98311 * 24 22 21 27 27 H 1.48504 * 109.46702 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47501 * 119.99457 * 26 24 22 29 29 H 1.48496 * 109.47301 * 239.99911 * 26 24 22 30 30 H 1.09002 * 109.47511 * 299.51369 * 1 2 3 31 31 H 1.09001 * 109.47328 * 59.50750 * 1 2 3 32 32 H 1.08996 * 109.47276 * 179.51141 * 1 2 3 33 33 H 1.09003 * 109.64808 * 174.41996 * 4 2 1 34 34 H 1.08991 * 109.44371 * 54.29569 * 4 2 1 35 35 H 1.09000 * 109.47430 * 167.59856 * 6 5 4 36 36 H 1.09006 * 109.46893 * 287.58994 * 6 5 4 37 37 H 0.96704 * 113.99863 * 60.00456 * 9 7 6 38 38 H 1.08005 * 119.99730 * 0.02562 * 11 10 7 39 39 H 1.07998 * 120.00603 * 180.27711 * 12 11 10 40 40 H 1.08001 * 120.00550 * 179.97438 * 15 13 12 41 41 H 1.07998 * 119.99424 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.48769 * 303.14317 * 17 5 4 43 43 H 1.08997 * 109.49861 * 183.06683 * 17 5 4 44 44 H 1.08994 * 109.47228 * 179.03216 * 20 18 17 45 45 H 1.09005 * 109.47175 * 299.03714 * 20 18 17 46 46 H 1.09005 * 109.46905 * 59.03120 * 20 18 17 47 47 H 0.96995 * 120.00294 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0505 -0.7378 -1.2438 5 7 1.6752 -2.1554 -1.1586 6 6 1.9989 -2.8615 -2.4054 7 6 3.4261 -2.5136 -2.8329 8 1 3.5246 -1.4318 -2.9236 9 8 4.3477 -2.9953 -1.8529 10 6 3.7236 -3.1581 -4.1622 11 6 4.0748 -4.4940 -4.2191 12 6 4.3423 -5.0872 -5.4385 13 6 4.2696 -4.3409 -6.6012 14 17 4.6118 -5.0837 -8.1326 15 6 3.9236 -3.0027 -6.5431 16 6 3.6512 -2.4119 -5.3236 17 6 2.3101 -2.8065 -0.0049 18 6 1.8056 -2.1543 1.2869 19 1 0.7416 -2.3574 1.4082 20 6 2.5794 -2.7149 2.4818 21 7 2.0241 -0.7029 1.1937 22 6 2.6655 -0.0230 2.1945 23 1 3.4406 -0.5101 2.7675 24 6 2.3193 1.2922 2.4726 25 7 1.2372 1.8155 1.9361 26 14 3.3849 2.3171 3.6142 27 1 4.5313 1.5002 4.0873 28 1 3.8921 3.5061 2.8833 29 1 2.5784 2.7594 4.7799 30 1 -0.3634 0.5063 0.8943 31 1 -0.3634 0.5215 -0.8855 32 1 -0.3633 -1.0276 -0.0088 33 1 3.1360 -0.6513 -1.2937 34 1 1.6091 -0.2978 -2.1379 35 1 1.9196 -3.9368 -2.2452 36 1 1.3014 -2.5583 -3.1863 37 1 4.3153 -3.9526 -1.7195 38 1 4.1355 -5.0755 -3.3109 39 1 4.6123 -6.1319 -5.4832 40 1 3.8670 -2.4196 -7.4504 41 1 3.3806 -1.3673 -5.2782 42 1 3.3919 -2.6911 -0.0721 43 1 2.0565 -3.8665 -0.0003 44 1 2.2305 -2.2370 3.3971 45 1 2.4157 -3.7906 2.5484 46 1 3.6432 -2.5167 2.3511 47 1 0.9952 2.7343 2.1307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878772174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:00 Heat of formation + Delta-G solvation = -13.746303 kcal Electronic energy + Delta-G solvation = -28126.571952 eV Core-core repulsion = 24335.201157 eV Total energy + Delta-G solvation = -3791.370794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.12922 -39.92923 -38.19240 -37.25333 -35.76139 -34.19142 -33.15695 -32.42448 -32.00369 -29.84715 -28.58375 -27.47064 -26.31737 -25.04484 -23.85310 -23.10879 -22.47412 -21.75660 -20.23722 -18.74014 -18.00479 -17.42104 -17.19040 -16.79676 -16.33169 -16.02831 -15.87572 -15.63628 -15.44153 -15.10439 -14.85999 -14.76470 -14.43358 -14.35362 -13.99161 -13.59275 -13.31077 -13.21881 -12.97624 -12.80627 -12.77060 -12.60086 -12.52421 -12.31608 -12.26715 -12.16492 -12.10219 -12.02225 -11.81824 -11.78009 -11.71981 -11.25741 -11.09453 -10.93473 -10.42040 -10.03625 -9.67742 -8.87665 -8.36614 -7.73144 -5.21829 0.08176 0.29789 1.13271 1.46413 1.49389 1.57746 2.56260 2.57285 3.12279 3.41201 3.50894 3.60033 3.70650 3.76279 3.91807 4.08006 4.18487 4.33218 4.37909 4.39436 4.46304 4.59586 4.66578 4.72021 4.72843 4.85310 4.86615 4.92155 4.96950 4.99925 5.04281 5.10746 5.16775 5.18415 5.22402 5.32243 5.38148 5.51108 5.52991 5.65518 5.76402 5.77375 5.82894 6.08617 6.31346 6.41242 6.57101 6.76745 7.31482 8.01538 8.56426 9.30727 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.002527 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.512359 B =11076.433245 C =11269.946841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.198 3.802 3 H 0.049 0.951 4 C 0.055 3.945 5 N -0.528 5.528 6 C 0.035 3.965 7 C 0.119 3.881 8 H 0.093 0.907 9 O -0.560 6.560 10 C -0.109 4.109 11 C -0.100 4.100 12 C -0.110 4.110 13 C -0.048 4.048 14 Cl -0.074 7.074 15 C -0.113 4.113 16 C -0.107 4.107 17 C 0.050 3.950 18 C 0.161 3.839 19 H 0.010 0.990 20 C -0.126 4.126 21 N -0.598 5.598 22 C -0.246 4.246 23 H 0.065 0.935 24 C -0.048 4.048 25 N -0.923 5.923 26 Si 0.955 3.045 27 H -0.271 1.271 28 H -0.295 1.295 29 H -0.296 1.296 30 H 0.038 0.962 31 H 0.032 0.968 32 H 0.036 0.964 33 H 0.021 0.979 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.383 0.617 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -15.547 -17.213 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.091 3.909 3 H 0.067 0.933 4 C -0.074 4.074 5 N -0.251 5.251 6 C -0.093 4.093 7 C 0.058 3.942 8 H 0.111 0.889 9 O -0.368 6.368 10 C -0.110 4.110 11 C -0.118 4.118 12 C -0.128 4.128 13 C -0.075 4.075 14 Cl -0.045 7.045 15 C -0.131 4.131 16 C -0.125 4.125 17 C -0.079 4.079 18 C 0.055 3.945 19 H 0.027 0.973 20 C -0.184 4.184 21 N -0.322 5.322 22 C -0.377 4.377 23 H 0.083 0.917 24 C -0.244 4.244 25 N -0.570 5.570 26 Si 0.785 3.215 27 H -0.196 1.196 28 H -0.222 1.222 29 H -0.224 1.224 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.233 0.767 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.426 -14.873 -17.181 23.152 hybrid contribution 0.958 0.661 0.376 1.223 sum 5.385 -14.213 -16.805 22.659 Atomic orbital electron populations 1.21767 0.97967 0.98728 0.99348 1.20311 0.92411 0.94119 0.84032 0.93334 1.22617 0.96930 0.89072 0.98819 1.62134 1.58153 1.01956 1.02824 1.22971 0.93865 1.00090 0.92415 1.21557 0.90046 0.98521 0.84028 0.88874 1.86718 1.61688 1.28680 1.59714 1.20694 0.99411 0.95064 0.95841 1.21081 0.98412 0.93994 0.98346 1.21243 0.99976 1.01084 0.90536 1.21126 1.04808 0.94217 0.87318 1.98372 1.93666 1.82541 1.29900 1.21219 0.99487 0.93212 0.99224 1.21178 0.99240 1.00807 0.91282 1.22709 0.97874 0.97293 0.90051 1.20706 0.95550 0.84244 0.93951 0.97261 1.21677 0.99531 0.99825 0.97399 1.44424 1.66781 1.02725 1.18254 1.19408 1.11946 0.95272 1.11034 0.91738 1.25781 0.97518 1.00408 1.00673 1.70139 1.24821 1.13732 1.48301 0.85388 0.78659 0.78847 0.78638 1.19561 1.22240 1.22360 0.94263 0.94849 0.94499 0.96082 0.91123 0.88861 0.89553 0.76692 0.83143 0.83227 0.83689 0.84239 0.92894 0.89922 0.94315 0.90706 0.93574 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.96 71.98 0.64 -4.84 16 2 C 0.20 9.29 2.35 45.12 0.11 9.39 16 3 H 0.05 2.66 6.36 -2.38 -0.02 2.65 16 4 C 0.05 2.03 3.97 86.54 0.34 2.38 16 5 N -0.53 -16.53 4.32 -894.31 -3.86 -20.39 16 6 C 0.04 0.78 5.26 86.30 0.45 1.24 16 7 C 0.12 2.60 2.61 29.85 0.08 2.68 16 8 H 0.09 2.43 6.08 -2.39 -0.01 2.42 16 9 O -0.56 -13.28 10.37 -148.98 -1.54 -14.82 16 10 C -0.11 -1.97 4.97 -19.86 -0.10 -2.07 16 11 C -0.10 -1.49 9.32 22.27 0.21 -1.29 16 12 C -0.11 -1.63 9.83 22.29 0.22 -1.41 16 13 C -0.05 -0.80 6.32 22.32 0.14 -0.66 16 14 Cl -0.07 -1.17 28.96 -2.72 -0.08 -1.24 16 15 C -0.11 -1.86 9.83 22.29 0.22 -1.64 16 16 C -0.11 -1.88 9.67 22.26 0.22 -1.67 16 17 C 0.05 1.59 4.39 86.38 0.38 1.97 16 18 C 0.16 6.54 3.25 44.96 0.15 6.69 16 19 H 0.01 0.43 7.61 -2.39 -0.02 0.41 16 20 C -0.13 -4.59 7.97 71.98 0.57 -4.02 16 21 N -0.60 -29.24 2.71 -649.82 -1.76 -31.00 16 22 C -0.25 -13.27 8.56 84.03 0.72 -12.56 16 23 H 0.07 3.44 6.34 -2.91 -0.02 3.42 16 24 C -0.05 -2.68 5.04 84.86 0.43 -2.26 16 25 N -0.92 -53.60 9.63 21.65 0.21 -53.39 16 26 Si 0.95 45.40 29.57 68.60 2.03 47.43 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 28 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 29 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 30 H 0.04 2.08 6.68 -2.39 -0.02 2.07 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.62 7.06 -2.39 -0.02 1.60 16 33 H 0.02 0.83 6.60 -2.39 -0.02 0.82 16 34 H 0.07 2.36 8.11 -2.39 -0.02 2.34 16 35 H 0.09 1.70 7.84 -2.39 -0.02 1.68 16 36 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16 37 H 0.38 6.01 7.50 -74.05 -0.56 5.46 16 38 H 0.15 1.50 6.78 -2.91 -0.02 1.48 16 39 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 40 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.14 2.20 8.04 -2.91 -0.02 2.17 16 42 H 0.05 1.79 5.81 -2.38 -0.01 1.78 16 43 H 0.08 2.14 7.92 -2.39 -0.02 2.12 16 44 H 0.04 1.56 7.58 -2.39 -0.02 1.54 16 45 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.05 1.71 7.56 -2.38 -0.02 1.69 16 47 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -64.61 371.87 0.20 -64.41 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.42 Total: 17.07 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 4.78 Total: -8.07 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -5.41 Total: -104.78 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -1.54 Total: -14.82 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.24 kcal Total: -64.61 0.20 -64.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878772174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.669 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds