Wall clock time and date at job start Tue Mar 31 2020 21:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.62357 * 2 1 4 4 C 1.53239 * 109.62432 * 239.41307 * 2 1 3 5 5 N 1.46904 * 109.33381 * 186.46184 * 4 2 1 6 6 C 1.46901 * 110.99558 * 187.25287 * 5 4 2 7 7 C 1.53002 * 109.46842 * 160.56732 * 6 5 4 8 8 H 1.08993 * 109.46962 * 57.14415 * 7 6 5 9 9 O 1.42898 * 109.47421 * 297.14126 * 7 6 5 10 10 C 1.50707 * 109.46961 * 177.14256 * 7 6 5 11 11 C 1.38260 * 119.99210 * 84.72421 * 10 7 6 12 12 C 1.38230 * 120.02235 * 179.76494 * 11 10 7 13 13 C 1.38237 * 120.01071 * 0.51301 * 12 11 10 14 14 C 1.38334 * 119.99229 * 359.74113 * 13 12 11 15 15 Cl 1.73588 * 120.01681 * 179.97438 * 14 13 12 16 16 C 1.38198 * 119.99004 * 265.00099 * 10 7 6 17 17 C 1.46900 * 111.26967 * 63.10955 * 5 4 2 18 18 C 1.53237 * 109.33802 * 296.89286 * 17 5 4 19 19 H 1.09003 * 109.62801 * 173.54098 * 18 17 5 20 20 C 1.53007 * 109.62594 * 294.11948 * 18 17 5 21 21 N 1.47075 * 109.62551 * 120.38699 * 2 1 3 22 22 C 1.36945 * 120.88390 * 350.91549 * 21 2 1 23 23 H 1.08001 * 119.99714 * 27.19694 * 22 21 2 24 24 C 1.38814 * 119.99996 * 207.19981 * 22 21 2 25 25 N 1.31618 * 119.99835 * 15.12039 * 24 22 21 26 26 Si 1.86794 * 119.99781 * 195.12081 * 24 22 21 27 27 H 1.48495 * 109.47218 * 89.99912 * 26 24 22 28 28 H 1.48502 * 109.46919 * 209.99683 * 26 24 22 29 29 H 1.48494 * 109.47448 * 329.99703 * 26 24 22 30 30 H 1.09001 * 109.46879 * 299.61655 * 1 2 3 31 31 H 1.08991 * 109.47481 * 179.61461 * 1 2 3 32 32 H 1.09005 * 109.46869 * 59.61107 * 1 2 3 33 33 H 1.08994 * 109.49804 * 306.41886 * 4 2 1 34 34 H 1.08996 * 109.49388 * 66.50373 * 4 2 1 35 35 H 1.08995 * 109.47642 * 280.56948 * 6 5 4 36 36 H 1.09006 * 109.47083 * 40.57253 * 6 5 4 37 37 H 0.96705 * 113.99692 * 300.00148 * 9 7 6 38 38 H 1.07994 * 119.99277 * 0.02562 * 11 10 7 39 39 H 1.07993 * 119.99224 * 180.23410 * 12 11 10 40 40 H 1.07998 * 120.00386 * 179.72150 * 13 12 11 41 41 H 1.07998 * 120.00862 * 0.02562 * 16 10 7 42 42 H 1.08998 * 109.49380 * 176.93016 * 17 5 4 43 43 H 1.09002 * 109.51385 * 56.86594 * 17 5 4 44 44 H 1.09006 * 109.46828 * 179.02977 * 20 18 17 45 45 H 1.08997 * 109.47021 * 299.02916 * 20 18 17 46 46 H 1.09000 * 109.47002 * 59.03477 * 20 18 17 47 47 H 0.96999 * 119.99682 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7345 -1.2425 5 7 3.5055 -0.8665 -1.1593 6 6 4.0568 -1.4105 -2.4075 7 6 5.5511 -1.0917 -2.4866 8 1 6.0562 -1.4980 -1.6104 9 8 5.7345 0.3249 -2.5279 10 6 6.1314 -1.7098 -3.7326 11 6 6.0538 -1.0376 -4.9382 12 6 6.5901 -1.6018 -6.0805 13 6 7.1950 -2.8433 -6.0199 14 6 7.2683 -3.5187 -4.8149 15 17 8.0272 -5.0781 -4.7383 16 6 6.7359 -2.9510 -3.6708 17 6 3.9016 -1.6872 -0.0072 18 6 3.4629 -0.9919 1.2860 19 1 3.6508 -1.6476 2.1362 20 6 4.2417 0.3140 1.4570 21 7 2.0241 -0.7007 1.1950 22 6 1.1671 -1.0728 2.1963 23 1 0.1286 -1.2684 1.9732 24 6 1.6331 -1.1984 3.4978 25 7 2.7978 -0.6845 3.8322 26 14 0.6073 -2.0967 4.7745 27 1 0.9643 -3.5381 4.7714 28 1 0.8755 -1.5231 6.1177 29 1 -0.8335 -1.9430 4.4493 30 1 -0.3633 0.5079 0.8934 31 1 -0.3634 -1.0275 -0.0069 32 1 -0.3633 0.5199 -0.8865 33 1 1.5924 -1.7248 -1.2932 34 1 1.7811 -0.1676 -2.1354 35 1 3.9143 -2.4909 -2.4273 36 1 3.5439 -0.9607 -3.2577 37 1 5.3107 0.7545 -3.2836 38 1 5.5777 -0.0694 -4.9868 39 1 6.5325 -1.0746 -7.0212 40 1 7.6100 -3.2860 -6.9133 41 1 6.7922 -3.4782 -2.7299 42 1 4.9845 -1.8114 -0.0041 43 1 3.4236 -2.6645 -0.0748 44 1 3.9154 0.8149 2.3685 45 1 5.3074 0.0953 1.5241 46 1 4.0569 0.9621 0.6003 47 1 3.1236 -0.7726 4.7416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878773003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:13 Heat of formation + Delta-G solvation = 2.375430 kcal Electronic energy + Delta-G solvation = -27906.711098 eV Core-core repulsion = 24116.039394 eV Total energy + Delta-G solvation = -3790.671704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.06682 -38.57780 -37.16316 -36.42070 -34.44399 -32.55009 -32.02018 -31.15245 -30.89810 -28.42467 -27.38013 -25.94377 -24.76177 -23.51110 -23.01861 -21.88076 -21.27820 -20.36029 -18.53847 -17.93105 -16.32984 -16.21687 -16.04329 -15.68812 -15.29451 -14.69350 -14.60757 -14.42387 -14.09723 -13.87074 -13.74375 -13.62694 -13.25612 -13.09257 -12.75695 -12.24343 -11.88685 -11.84329 -11.79468 -11.64460 -11.49926 -11.38886 -11.22250 -11.00241 -10.95531 -10.82602 -10.59225 -10.48012 -10.39995 -10.07647 -9.96982 -9.84109 -9.42189 -9.22787 -9.13192 -8.94537 -8.41393 -7.72028 -6.56364 -5.70569 -3.13280 0.83213 0.93359 1.83670 3.27542 3.39930 3.47222 3.47888 4.09362 4.41066 4.50642 4.52723 4.65621 4.77080 4.90703 4.97847 5.10456 5.24741 5.33664 5.35245 5.45045 5.53840 5.67250 5.77326 5.84491 5.89131 5.92558 6.00321 6.11797 6.14123 6.23342 6.27014 6.34123 6.37723 6.45689 6.47251 6.67921 6.93325 6.99946 7.10579 7.21611 7.31096 7.54648 7.60319 7.72451 7.79501 7.91879 8.03810 8.52189 9.30302 9.92244 10.50562 11.36500 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.002721 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.304156 B =10288.349480 C =10973.095743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 H 0.034 0.966 4 C 0.051 3.949 5 N -0.518 5.518 6 C 0.028 3.972 7 C 0.155 3.845 8 H 0.110 0.890 9 O -0.533 6.533 10 C -0.096 4.096 11 C -0.108 4.108 12 C -0.104 4.104 13 C -0.116 4.116 14 C -0.032 4.032 15 Cl -0.072 7.072 16 C -0.101 4.101 17 C 0.040 3.960 18 C 0.199 3.801 19 H 0.095 0.905 20 C -0.132 4.132 21 N -0.585 5.585 22 C -0.248 4.248 23 H 0.070 0.930 24 C 0.001 3.999 25 N -0.898 5.898 26 Si 0.899 3.101 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.038 0.962 36 H 0.070 0.930 37 H 0.366 0.634 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.058 0.942 43 H 0.022 0.978 44 H 0.070 0.930 45 H 0.019 0.981 46 H 0.035 0.965 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -2.666 -20.168 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.065 3.935 3 H 0.052 0.948 4 C -0.079 4.079 5 N -0.241 5.241 6 C -0.101 4.101 7 C 0.095 3.905 8 H 0.127 0.873 9 O -0.337 6.337 10 C -0.097 4.097 11 C -0.126 4.126 12 C -0.123 4.123 13 C -0.135 4.135 14 C -0.058 4.058 15 Cl -0.043 7.043 16 C -0.120 4.120 17 C -0.089 4.089 18 C 0.092 3.908 19 H 0.113 0.887 20 C -0.191 4.191 21 N -0.309 5.309 22 C -0.377 4.377 23 H 0.087 0.913 24 C -0.197 4.197 25 N -0.543 5.543 26 Si 0.730 3.270 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.207 1.207 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.213 0.787 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.077 0.923 43 H 0.040 0.960 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.054 0.946 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.188 -2.455 -19.350 21.154 hybrid contribution -0.968 -1.511 -0.007 1.794 sum 7.219 -3.966 -19.357 21.037 Atomic orbital electron populations 1.21812 0.96214 1.01165 1.00395 1.20447 0.92088 0.94320 0.86610 0.94838 1.22676 0.86762 0.98952 0.99469 1.61842 1.10732 1.50369 1.01198 1.22760 0.94709 0.98153 0.94450 1.20815 0.94477 0.81591 0.93648 0.87273 1.86723 1.77769 1.18115 1.51123 1.20724 0.97830 0.94475 0.96665 1.21024 0.99445 1.00166 0.91945 1.21085 0.97614 0.94787 0.98770 1.21057 1.00540 0.95352 0.96514 1.20918 1.00861 0.88538 0.95502 1.98377 1.80390 1.26827 1.98723 1.20937 0.97923 0.95321 0.97836 1.22928 0.98523 0.94346 0.93101 1.20402 0.82814 0.95321 0.92226 0.88729 1.21917 0.96466 0.99357 1.01346 1.44280 1.03554 1.65180 1.17857 1.19202 0.93079 1.39095 0.86355 0.91271 1.25022 0.97555 1.00343 0.96783 1.70003 1.20169 1.46168 1.17990 0.86342 0.79799 0.79614 0.81292 1.21732 1.21885 1.20672 0.91787 0.93082 0.94319 0.95630 0.92389 0.94421 0.91179 0.78670 0.85341 0.84977 0.85043 0.84730 0.92335 0.96001 0.91121 0.96193 0.94592 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.94 37.16 0.30 -2.26 16 2 C 0.17 3.55 3.25 -67.49 -0.22 3.33 16 3 H 0.03 0.75 7.64 -51.93 -0.40 0.35 16 4 C 0.05 0.89 4.88 -3.70 -0.02 0.88 16 5 N -0.52 -8.82 3.96 -234.32 -0.93 -9.75 16 6 C 0.03 0.38 4.63 -3.82 -0.02 0.36 16 7 C 0.15 1.90 3.28 -27.88 -0.09 1.81 16 8 H 0.11 1.49 6.61 -51.93 -0.34 1.15 16 9 O -0.53 -6.97 13.05 -35.23 -0.46 -7.43 16 10 C -0.10 -1.01 5.00 -104.63 -0.52 -1.53 16 11 C -0.11 -0.94 9.33 -39.58 -0.37 -1.31 16 12 C -0.10 -0.81 10.05 -39.58 -0.40 -1.21 16 13 C -0.12 -0.99 9.83 -39.55 -0.39 -1.38 16 14 C -0.03 -0.32 6.32 -39.50 -0.25 -0.57 16 15 Cl -0.07 -0.70 28.96 -51.86 -1.50 -2.20 16 16 C -0.10 -1.08 9.47 -39.55 -0.37 -1.45 16 17 C 0.04 0.77 4.84 -3.70 -0.02 0.75 16 18 C 0.20 4.64 2.35 -67.49 -0.16 4.48 16 19 H 0.09 2.51 6.10 -51.93 -0.32 2.20 16 20 C -0.13 -3.04 8.95 37.16 0.33 -2.71 16 21 N -0.59 -14.18 2.73 -157.00 -0.43 -14.61 16 22 C -0.25 -6.55 8.71 -15.05 -0.13 -6.68 16 23 H 0.07 1.80 6.18 -52.49 -0.32 1.47 16 24 C 0.00 0.03 4.98 -17.43 -0.09 -0.05 16 25 N -0.90 -25.18 9.70 55.49 0.54 -24.64 16 26 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 30 H 0.06 1.28 7.52 -51.93 -0.39 0.89 16 31 H 0.05 0.96 7.59 -51.93 -0.39 0.56 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 35 H 0.04 0.52 8.01 -51.93 -0.42 0.10 16 36 H 0.07 0.83 7.78 -51.93 -0.40 0.42 16 37 H 0.37 3.44 7.40 45.56 0.34 3.77 16 38 H 0.13 0.85 6.62 -52.49 -0.35 0.51 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.06 1.05 6.61 -51.93 -0.34 0.70 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 1.85 6.90 -51.93 -0.36 1.49 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.03 0.81 7.08 -51.93 -0.37 0.44 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -29.38 378.11 -11.10 -40.47 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.57 Total: 3.53 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.42 Total: -7.54 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.82 Total: -48.99 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.46 Total: -7.43 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.38 -11.10 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878773003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.850 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds