Wall clock time and date at job start Tue Mar 31 2020 21:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.62357 * 2 1 4 4 C 1.53239 * 109.62432 * 239.41307 * 2 1 3 5 5 N 1.46904 * 109.33381 * 186.46184 * 4 2 1 6 6 C 1.46901 * 110.99558 * 187.25287 * 5 4 2 7 7 C 1.53002 * 109.46842 * 160.56732 * 6 5 4 8 8 H 1.08993 * 109.46962 * 57.14415 * 7 6 5 9 9 O 1.42898 * 109.47421 * 297.14126 * 7 6 5 10 10 C 1.50707 * 109.46961 * 177.14256 * 7 6 5 11 11 C 1.38260 * 119.99210 * 84.72421 * 10 7 6 12 12 C 1.38230 * 120.02235 * 179.76494 * 11 10 7 13 13 C 1.38237 * 120.01071 * 0.51301 * 12 11 10 14 14 C 1.38334 * 119.99229 * 359.74113 * 13 12 11 15 15 Cl 1.73588 * 120.01681 * 179.97438 * 14 13 12 16 16 C 1.38198 * 119.99004 * 265.00099 * 10 7 6 17 17 C 1.46900 * 111.26967 * 63.10955 * 5 4 2 18 18 C 1.53237 * 109.33802 * 296.89286 * 17 5 4 19 19 H 1.09003 * 109.62801 * 173.54098 * 18 17 5 20 20 C 1.53007 * 109.62594 * 294.11948 * 18 17 5 21 21 N 1.47075 * 109.62551 * 120.38699 * 2 1 3 22 22 C 1.36945 * 120.88390 * 350.91549 * 21 2 1 23 23 H 1.08001 * 119.99714 * 27.19694 * 22 21 2 24 24 C 1.38814 * 119.99996 * 207.19981 * 22 21 2 25 25 N 1.31618 * 119.99835 * 15.12039 * 24 22 21 26 26 Si 1.86794 * 119.99781 * 195.12081 * 24 22 21 27 27 H 1.48495 * 109.47218 * 89.99912 * 26 24 22 28 28 H 1.48502 * 109.46919 * 209.99683 * 26 24 22 29 29 H 1.48494 * 109.47448 * 329.99703 * 26 24 22 30 30 H 1.09001 * 109.46879 * 299.61655 * 1 2 3 31 31 H 1.08991 * 109.47481 * 179.61461 * 1 2 3 32 32 H 1.09005 * 109.46869 * 59.61107 * 1 2 3 33 33 H 1.08994 * 109.49804 * 306.41886 * 4 2 1 34 34 H 1.08996 * 109.49388 * 66.50373 * 4 2 1 35 35 H 1.08995 * 109.47642 * 280.56948 * 6 5 4 36 36 H 1.09006 * 109.47083 * 40.57253 * 6 5 4 37 37 H 0.96705 * 113.99692 * 300.00148 * 9 7 6 38 38 H 1.07994 * 119.99277 * 0.02562 * 11 10 7 39 39 H 1.07993 * 119.99224 * 180.23410 * 12 11 10 40 40 H 1.07998 * 120.00386 * 179.72150 * 13 12 11 41 41 H 1.07998 * 120.00862 * 0.02562 * 16 10 7 42 42 H 1.08998 * 109.49380 * 176.93016 * 17 5 4 43 43 H 1.09002 * 109.51385 * 56.86594 * 17 5 4 44 44 H 1.09006 * 109.46828 * 179.02977 * 20 18 17 45 45 H 1.08997 * 109.47021 * 299.02916 * 20 18 17 46 46 H 1.09000 * 109.47002 * 59.03477 * 20 18 17 47 47 H 0.96999 * 119.99682 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7345 -1.2425 5 7 3.5055 -0.8665 -1.1593 6 6 4.0568 -1.4105 -2.4075 7 6 5.5511 -1.0917 -2.4866 8 1 6.0562 -1.4980 -1.6104 9 8 5.7345 0.3249 -2.5279 10 6 6.1314 -1.7098 -3.7326 11 6 6.0538 -1.0376 -4.9382 12 6 6.5901 -1.6018 -6.0805 13 6 7.1950 -2.8433 -6.0199 14 6 7.2683 -3.5187 -4.8149 15 17 8.0272 -5.0781 -4.7383 16 6 6.7359 -2.9510 -3.6708 17 6 3.9016 -1.6872 -0.0072 18 6 3.4629 -0.9919 1.2860 19 1 3.6508 -1.6476 2.1362 20 6 4.2417 0.3140 1.4570 21 7 2.0241 -0.7007 1.1950 22 6 1.1671 -1.0728 2.1963 23 1 0.1286 -1.2684 1.9732 24 6 1.6331 -1.1984 3.4978 25 7 2.7978 -0.6845 3.8322 26 14 0.6073 -2.0967 4.7745 27 1 0.9643 -3.5381 4.7714 28 1 0.8755 -1.5231 6.1177 29 1 -0.8335 -1.9430 4.4493 30 1 -0.3633 0.5079 0.8934 31 1 -0.3634 -1.0275 -0.0069 32 1 -0.3633 0.5199 -0.8865 33 1 1.5924 -1.7248 -1.2932 34 1 1.7811 -0.1676 -2.1354 35 1 3.9143 -2.4909 -2.4273 36 1 3.5439 -0.9607 -3.2577 37 1 5.3107 0.7545 -3.2836 38 1 5.5777 -0.0694 -4.9868 39 1 6.5325 -1.0746 -7.0212 40 1 7.6100 -3.2860 -6.9133 41 1 6.7922 -3.4782 -2.7299 42 1 4.9845 -1.8114 -0.0041 43 1 3.4236 -2.6645 -0.0748 44 1 3.9154 0.8149 2.3685 45 1 5.3074 0.0953 1.5241 46 1 4.0569 0.9621 0.6003 47 1 3.1236 -0.7726 4.7416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878773003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:12 Heat of formation + Delta-G solvation = -15.263641 kcal Electronic energy + Delta-G solvation = -27907.475985 eV Core-core repulsion = 24116.039394 eV Total energy + Delta-G solvation = -3791.436591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.91048 -39.96363 -38.15463 -37.24632 -35.96536 -34.24114 -33.22822 -32.60734 -31.60337 -29.93107 -28.81876 -27.51968 -26.31202 -25.00544 -23.70028 -23.20134 -22.51876 -21.66533 -20.33300 -18.73169 -17.98401 -17.29249 -17.03634 -16.81362 -16.51395 -16.06852 -15.88319 -15.65987 -15.56105 -15.14060 -14.88621 -14.72712 -14.54533 -14.36411 -14.21680 -13.56513 -13.28395 -13.04322 -12.94195 -12.81972 -12.79860 -12.66407 -12.56888 -12.42899 -12.26160 -12.24582 -12.17354 -12.07431 -11.84305 -11.80568 -11.59872 -11.26987 -11.09415 -10.85393 -10.42715 -9.90525 -9.67847 -9.12485 -8.50180 -7.74858 -5.18840 0.14593 0.24789 1.12477 1.47496 1.49341 1.56605 2.55352 2.57821 2.95518 3.38530 3.54687 3.63943 3.76160 3.84392 3.97710 4.10923 4.17023 4.24858 4.31984 4.40115 4.43020 4.51620 4.59891 4.62771 4.65668 4.73089 4.79506 4.88627 4.88878 4.90999 4.93851 5.02535 5.13898 5.22635 5.28207 5.34835 5.37271 5.46008 5.49864 5.58502 5.73854 5.80203 5.82252 6.03357 6.24225 6.32639 6.51824 6.93771 7.27725 7.98915 8.51891 9.29773 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.002721 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.304156 B =10288.349480 C =10973.095743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.164 3.836 3 H 0.018 0.982 4 C 0.060 3.940 5 N -0.523 5.523 6 C 0.034 3.966 7 C 0.165 3.835 8 H 0.088 0.912 9 O -0.551 6.551 10 C -0.106 4.106 11 C -0.107 4.107 12 C -0.099 4.099 13 C -0.116 4.116 14 C -0.046 4.046 15 Cl -0.077 7.077 16 C -0.118 4.118 17 C 0.055 3.945 18 C 0.197 3.803 19 H 0.056 0.944 20 C -0.111 4.111 21 N -0.601 5.601 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.051 4.051 25 N -0.924 5.924 26 Si 0.957 3.043 27 H -0.292 1.292 28 H -0.299 1.299 29 H -0.272 1.272 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.019 0.981 34 H 0.093 0.907 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.383 0.617 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.011 0.989 44 H 0.034 0.966 45 H 0.028 0.972 46 H 0.038 0.962 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.114 -2.324 -23.542 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 H 0.036 0.964 4 C -0.069 4.069 5 N -0.246 5.246 6 C -0.095 4.095 7 C 0.105 3.895 8 H 0.105 0.895 9 O -0.358 6.358 10 C -0.107 4.107 11 C -0.125 4.125 12 C -0.117 4.117 13 C -0.135 4.135 14 C -0.072 4.072 15 Cl -0.049 7.049 16 C -0.136 4.136 17 C -0.074 4.074 18 C 0.090 3.910 19 H 0.074 0.926 20 C -0.170 4.170 21 N -0.325 5.325 22 C -0.380 4.380 23 H 0.089 0.911 24 C -0.247 4.247 25 N -0.570 5.570 26 Si 0.787 3.213 27 H -0.219 1.219 28 H -0.226 1.226 29 H -0.197 1.197 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.037 0.963 34 H 0.111 0.889 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.232 0.768 38 H 0.170 0.830 39 H 0.182 0.818 40 H 0.168 0.832 41 H 0.145 0.855 42 H 0.088 0.912 43 H 0.029 0.971 44 H 0.053 0.947 45 H 0.047 0.953 46 H 0.057 0.943 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.734 -2.110 -22.768 24.138 hybrid contribution -0.812 -1.563 0.943 1.998 sum 6.922 -3.673 -21.825 23.189 Atomic orbital electron populations 1.21716 0.94683 1.01083 1.01193 1.20664 0.93497 0.93516 0.86510 0.96408 1.22543 0.86889 0.98568 0.98948 1.61782 1.10636 1.50203 1.02019 1.22814 0.95499 0.98102 0.93055 1.20545 0.93520 0.81481 0.93965 0.89462 1.86690 1.78231 1.18452 1.52431 1.20529 0.98900 0.94631 0.96629 1.21335 0.98961 1.00850 0.91317 1.21464 0.96190 0.94318 0.99747 1.21381 0.99981 0.95623 0.96493 1.21050 1.01462 0.88677 0.96018 1.98372 1.80503 1.27216 1.98761 1.20976 0.98834 0.95824 0.98011 1.22577 0.98994 0.93435 0.92407 1.20255 0.82916 0.94757 0.93036 0.92644 1.21670 0.96838 0.99067 0.99441 1.44522 1.03644 1.65798 1.18553 1.19481 0.93497 1.38018 0.86983 0.91071 1.25677 0.98746 1.01670 0.98560 1.70175 1.21562 1.47622 1.17678 0.85421 0.78956 0.78168 0.78801 1.21915 1.22646 1.19666 0.93994 0.93549 0.90469 0.96319 0.88877 0.94582 0.88609 0.76758 0.82979 0.81828 0.83248 0.85499 0.91202 0.97109 0.94697 0.95299 0.94286 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.94 71.99 0.57 -4.02 16 2 C 0.16 6.61 3.25 44.97 0.15 6.75 16 3 H 0.02 0.79 7.64 -2.39 -0.02 0.77 16 4 C 0.06 1.95 4.88 86.38 0.42 2.37 16 5 N -0.52 -16.93 3.96 -895.25 -3.55 -20.47 16 6 C 0.03 0.81 4.63 86.30 0.40 1.21 16 7 C 0.16 3.78 3.28 29.85 0.10 3.88 16 8 H 0.09 2.37 6.61 -2.39 -0.02 2.35 16 9 O -0.55 -13.14 13.05 -148.98 -1.94 -15.08 16 10 C -0.11 -2.01 5.00 -19.87 -0.10 -2.11 16 11 C -0.11 -1.48 9.33 22.27 0.21 -1.27 16 12 C -0.10 -1.16 10.05 22.27 0.22 -0.94 16 13 C -0.12 -1.66 9.83 22.29 0.22 -1.44 16 14 C -0.05 -0.85 6.32 22.33 0.14 -0.71 16 15 Cl -0.08 -1.45 28.96 -2.72 -0.08 -1.53 16 16 C -0.12 -2.40 9.47 22.29 0.21 -2.19 16 17 C 0.06 2.14 4.84 86.38 0.42 2.55 16 18 C 0.20 9.42 2.35 44.96 0.11 9.52 16 19 H 0.06 3.09 6.10 -2.39 -0.01 3.07 16 20 C -0.11 -5.26 8.95 71.98 0.64 -4.61 16 21 N -0.60 -29.53 2.73 -650.62 -1.78 -31.31 16 22 C -0.25 -13.41 8.71 84.03 0.73 -12.68 16 23 H 0.07 3.73 6.18 -2.91 -0.02 3.71 16 24 C -0.05 -2.84 4.98 84.86 0.42 -2.42 16 25 N -0.92 -53.88 9.70 21.65 0.21 -53.67 16 26 Si 0.96 45.28 29.58 68.60 2.03 47.31 16 27 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 30 H 0.04 1.65 7.52 -2.39 -0.02 1.63 16 31 H 0.05 1.67 7.59 -2.39 -0.02 1.66 16 32 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 2.43 7.90 -2.39 -0.02 2.41 16 35 H 0.04 0.91 8.01 -2.39 -0.02 0.89 16 36 H 0.10 1.85 7.78 -2.38 -0.02 1.84 16 37 H 0.38 5.86 7.40 -74.05 -0.55 5.32 16 38 H 0.15 1.32 6.62 -2.91 -0.02 1.30 16 39 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 41 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 42 H 0.07 2.52 6.61 -2.39 -0.02 2.50 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.03 1.88 6.90 -2.38 -0.02 1.86 16 45 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.04 1.77 7.08 -2.39 -0.02 1.76 16 47 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -65.68 378.11 0.18 -65.50 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.43 Total: 15.33 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 4.86 Total: -6.08 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -5.11 Total: -105.45 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.94 Total: -15.08 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -65.68 0.18 -65.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878773003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.233 kcal (2) G-P(sol) polarization free energy of solvation -65.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds